View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_61 (Length: 379)
Name: NF18243_low_61
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 28267749 - 28267374
Alignment:
| Q |
1 |
gtcactgaaaaaactcaaaccaccgctttctataccatatcgcgacactgcatcaaatttctattcattgaaaaatgaactttagccacctcatagtgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28267749 |
gtcactgaaaaaactcaaaccaccgctttctataccatatcgcgacactgcatcaaatttctattcattgaaaaatgaactttagccacctcatagtgtc |
28267650 |
T |
|
| Q |
101 |
aacaaatcagtcagtgtgtgtgtcagtctgacaggaaaaataaatgtttattgtgtctctttggattgaggaatacgtgcataaacatcataatttatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28267649 |
aacaaatcagtcagtgtgtgtgtcagtctgacaggaaaaataaatgtttattgtgtctctttggattgaggaatacatgcataaacatcataatttatga |
28267550 |
T |
|
| Q |
201 |
ttactttgaaatctatgtccatttaatatttcaaagg--nnnnnnngaaacaggaaagtacactaaagattaaagtgtcttggtatacttatgtttagat |
298 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28267549 |
ttgctttgaaatctatgtccatttaatatttcaaaggaaaaaaaaagaaacaggaaagtacactaaagattaaagtgtcttggtatacttatgtttagat |
28267450 |
T |
|
| Q |
299 |
aactctcatttgaatactgacctctggagtggttagaatgatatctgcttcatttatatttcttggagtgtaagat |
374 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28267449 |
aactctcatttgaatactgacctctggagtggttagaatgatatctgcttcatttatatttcttggagtgtaagat |
28267374 |
T |
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