View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_62 (Length: 379)
Name: NF18243_low_62
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 12889021 - 12888659
Alignment:
| Q |
1 |
ttagtattaaatattaactataagtggacttgatcaattattcatttgtagacaagaaaatgacaaaacttaagggacactttcaagtttgaaacactat |
100 |
Q |
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| T |
12889021 |
ttagtattaaatattaactataagtggacttgatcaattattcatttgtagacaagaaaatgacaaaacttaaggggcactttcaagtttgaaacactat |
12888922 |
T |
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| Q |
101 |
atatgaaaccatggggacaaacctctaaggatcagagactcctatctgtgtcacnnnnnnnaccaaactgattgtcctacattacactcatgggaggacc |
200 |
Q |
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| T |
12888921 |
atatgaaaccatggggaccaacctctaaggatcagagactcctatctgtgtcactttttttaccaaactgattgtcctacataacactcatgggaggacc |
12888822 |
T |
|
| Q |
201 |
aaaaaggcttaaccaaatatattcaaacggtctagatattgatttaacacagttactgcatggatgcagttattaatctgggtttgtttgattggatgtg |
300 |
Q |
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| T |
12888821 |
aaaaaggcttaaccaaatatattcaaacggtctagatattgatttaacacagttactgcatggatgcagttattaatctggg-ttgtttgattggaagtg |
12888723 |
T |
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| Q |
301 |
aacggtcgagatctcacactgtgagaaactaccgcgatctggactgtgcatttagagtcattgg |
364 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12888722 |
aacggtcgagatctcacactgtgagaaactactgcgatctggactgtgcatttagagtcattgg |
12888659 |
T |
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