View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_7 (Length: 637)
Name: NF18243_low_7
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 544; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 19 - 627
Target Start/End: Original strand, 37516471 - 37517087
Alignment:
| Q |
19 |
caaatcacctcaaatatcctgttttgatctccctgaatgggtagatacttacccatgaat--------tcattataacgagagaaatttaatagaaaaag |
110 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |
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| T |
37516471 |
caaatcaactcaaatatcctgttttgatctccctgaatgggtagatacttacccatgaatcacgatgttcattataacaagagaaatttaatagaacaag |
37516570 |
T |
|
| Q |
111 |
tatatcgtctagcttagcatggctattacaatttacatctgagcaaatgagagtaaaactattgtactaacagcagattatgaaaataatctagactgct |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37516571 |
tatatcgtctagcttagcatggctattacaatttacatctgagcaaatgagagtaaaattattgtactaacagcagattatgaaaataatctagactgct |
37516670 |
T |
|
| Q |
211 |
agacttgggtaacaaacaagagagcttgaagaatgaacgcagcatgcaactaagtttcaaactgatag--tctcataacactgctttgaagaattgatac |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37516671 |
agacttgggtaacaaacaagagagcttgaagaatgaacgcagcatgcaactaagtttcaaactgatagagtctcataacactgctttgaagaattgatac |
37516770 |
T |
|
| Q |
309 |
aaactctagcctatcaagaggttcaattaagactgcttgctaaatagacaaacatatattactcccagtgcatactggaaatgtatcagttatcaactat |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37516771 |
aaactctagcctatcaagaggttcaattaagactgcttgctaaatagacaaacatatattactcccagtgcatactggaaatgtatcagttatcaactat |
37516870 |
T |
|
| Q |
409 |
aatcagcattttgttaataataatatatctttgaaagtaatcataggtttaaaccatatcaagcatagttgaagtggtcataccatgtcatgaaccaatt |
508 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37516871 |
aatcagcattttgttaataatgatatatctttgaaagtaatcataggtttaaaccatatcaagcatagttgaagtggtcataccatgtcatgaaccaatt |
37516970 |
T |
|
| Q |
509 |
ccttccaaaagcttaagccatgctgaagacatgtgactggttctatatatctagcacaccactagaggaagaaatactttcacatttagtatatatttta |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37516971 |
ccttccaaaagcttaagccatgctgaagacatgtgaatggttctatatatctagcacaccactagaggaagaaatactttcacatttag--tatatttta |
37517068 |
T |
|
| Q |
609 |
gaacttaactctgcctatg |
627 |
Q |
| |
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||||||||||||||||||| |
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| T |
37517069 |
gaacttaactctgcctatg |
37517087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 19 - 627
Target Start/End: Original strand, 14842659 - 14843257
Alignment:
| Q |
19 |
caaatcacctcaaatatcctgttttgatctccctgaatgggtagatacttacccatgaat--------tcattataacgagagaaatttaatagaaaaag |
110 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |
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| T |
14842659 |
caaatcaactcaaatatccagttttgatctccctgaatgggtagatacttacccatgaatcacgatgttcattataacaagagaaatttaatagaacaag |
14842758 |
T |
|
| Q |
111 |
tatatcgtctagcttagcatggctattacaatttacatctgagcaaatgagagtaaaactattgtactaacagcagattatgaaaataatctagactgct |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14842759 |
tatatcgtctagcttagcatggctattacaatttacatctgagcaaatgagagtaaaattattgtactaacagcagattatgaaaataatctagactgct |
14842858 |
T |
|
| Q |
211 |
agacttgggtaacaaacaagagagcttgaagaatgaacgcagcatgcaactaagtttcaaactgat--agtctcataacactgctttgaagaattgatac |
308 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14842859 |
aaacttgggtaacaaacaagagagcttgaagaatgaacgcagcatgcaactaagtttcaaactgatagagtctcataacactgctttgaagaattgatac |
14842958 |
T |
|
| Q |
309 |
aaactctagcctatcaagaggttcaattaagactgcttgctaaatagacaaacatatattactcccagtgcatactggaaatgtatcagttatcaactat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14842959 |
aaactctagcctatcaagaggttcaattaagactgcttgctaaatagacaaacatatattactcccagtgcatactggaaatgtatcagttatcaactat |
14843058 |
T |
|
| Q |
409 |
aatcagcattttgttaataataatatatctttgaaagtaatcataggtttaaaccatatcaagcatagttgaagtggtcataccatgtcatgaaccaatt |
508 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14843059 |
aatcagcat------------------tctttgaaagtaatcataggtttaaaccatatcaagcatagttgaagtggtcataccatgtcatgaaccaatt |
14843140 |
T |
|
| Q |
509 |
ccttccaaaagcttaagccatgctgaagacatgtgactggttctatatatctagcacaccactagaggaagaaatactttcacatttagtatatatttta |
608 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
14843141 |
ccttccaaaagcttaagccatgctgaagacatgtgaatggttctatatatctagcacaccactagaggaagaaatactttcacatttag--tatatttga |
14843238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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