View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18243_low_71 (Length: 350)
Name: NF18243_low_71
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 39544405 - 39544721
Alignment:
| Q |
16 |
attttaacgtaatactcttttactaaagaagagttggtggtgttttcagagttgaaattttgtaacagaatgaaaccagggactgaaacattgaattttg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39544405 |
attttaacgtaatactcttttactaaagaagagttggtggtgttttcagagttgaaattttgtaacagaatgaaaccagggactgaaacattgaattttg |
39544504 |
T |
|
| Q |
116 |
cagaggaaaggttagttggtgaagagaatgaaaagaaacggaaacgtaccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39544505 |
cagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacataccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatg |
39544604 |
T |
|
| Q |
216 |
gaatatccttgctgtttggtagagaggtgaagacactggtgattgacttgttactttggagctttttctgaaacttgttttcgggtaagtagggtttgat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39544605 |
gaatatccttgctgtttggtagagaggtgaaaacactggtgattgacttgttactttggagctttttctgaaacttgtttttgggtaagtagggtttgat |
39544704 |
T |
|
| Q |
316 |
tcaccaatataaaggtt |
332 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
39544705 |
tcaccaatataaaggtt |
39544721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 39521612 - 39521931
Alignment:
| Q |
16 |
attttaacgtaatactcttttactaaagaagagttggtggtgttttcagagttgaaattttgtaacagaatgaaaccagggactgaaacattgaattttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||| ||||||||| |||||||| ||||||||| |
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| T |
39521612 |
attttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattatgtaacagaaggaaaccaggaactgaaacggtgaattttg |
39521711 |
T |
|
| Q |
116 |
cagaggaaaggttagttggtgaagagaatgaaaagaaacggaaacgtaccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||| | ||| |||||||||||||| | |||| | |
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| T |
39521712 |
cagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacgtaccatgtaagtgttgcttggaacggttttgaattcataggaagaattggaaag |
39521811 |
T |
|
| Q |
216 |
gaatatccttgctgtttggtagagaggtgaagacactggtgattgacttgttactttggag---ctttttctgaaacttgttttcgggtaagtagggttt |
312 |
Q |
| |
|
||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||| | |||||||||||| | ||||| |
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| T |
39521812 |
gaaaattcttgctgtttggttgagaggtgaagacactggtgattgacttgttactttggagttactttcgctgaataattttttcgggtaagcatggttt |
39521911 |
T |
|
| Q |
313 |
gattcaccaatataaaggtt |
332 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
39521912 |
gattcaccaatataaaggtt |
39521931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 39525109 - 39525421
Alignment:
| Q |
16 |
attttaacgtaatactcttttactaaagaagagttggtggtgttttcagagttgaaattttgtaacagaatgaaaccagggactgaaacattgaattttg |
115 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
39525109 |
attttaaggtaatactcttttactaaaggagagttggtggtgttttttgcatcgaaattttgtaacagaatgaaaccagggactgaaacggtgaattttg |
39525208 |
T |
|
| Q |
116 |
cagaggaaaggttagttggtgaagagaatgaaaagaaacggaaacgtaccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatg |
215 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| || || || |||| |||||||| |
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|
| T |
39525209 |
cagtggaaaggttaagtggtgaagagaatgaaaagaaatggaaacgtaccatgtaggtgttgtttggtacggttttgaactcgtataaagattcggaatg |
39525308 |
T |
|
| Q |
216 |
gaatatccttgctgtttggtagagaggtgaagacactggtgattgacttgttactttggagctttttctgaaacttgttttcgggtaagtagggtttgat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||| ||| || |||||||||| |||||||||||||| ||||| | ||||||||| |
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|
| T |
39525309 |
aaatatccttgctgtttggtagagaggtgaaggcactgatgattgactggtttctatggagcttttgctgaaacttgttttagggtagttggggtttgat |
39525408 |
T |
|
| Q |
316 |
tcaccaatataaa |
328 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
39525409 |
tccccaatataaa |
39525421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 39576257 - 39576573
Alignment:
| Q |
16 |
attttaacgtaatactcttttactaaagaagagttggtggtgttttcagagttgaaattttgtaacagaatgaaaccagggactgaaacattgaattttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |||||||||| ||||||||| || |||| |||||||||| |
|
|
| T |
39576257 |
attttaacgtaatactcttttactaaagcagatttggtggtgttttcagcgttgaaattatgtaacagaaggaaaccaggaacggaaatgttgaattttg |
39576356 |
T |
|
| Q |
116 |
cagaggaaaggttagttggtgaagagaatgaaaagaaacggaaacgtaccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatg |
215 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| || || ||||| |
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|
| T |
39576357 |
cagtggaaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatataagtgttgtttggtatggtagaaaattcgtaggaggattcagaatg |
39576456 |
T |
|
| Q |
216 |
gaatatccttgctgtttggtagagaggtgaagacactggtgattgacttgttactttggagcttttt---ctgaaacttgttttcgggtaagtagggttt |
312 |
Q |
| |
|
||| || |||||||||||||| |||||||||||||||| |||| || | ||| || |||| ||| || ||||| | |||| ||||||| | ||||| |
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| T |
39576457 |
gaaaattcttgctgtttggtaaagaggtgaagacactgatgatggattggtttctatggaacttctttggctgaatgattttttagggtaagcatggttt |
39576556 |
T |
|
| Q |
313 |
gattcaccaatataaag |
329 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
39576557 |
gattcaccaatataaag |
39576573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 39511366 - 39511653
Alignment:
| Q |
16 |
attttaacgtaatactcttttactaaagaagagttggtggtgttttcagagttgaaattttgtaacagaatgaaaccagggactgaaacattgaattttg |
115 |
Q |
| |
|
|||| |||||| || ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
39511366 |
atttgaacgtagtattcttttactaaaggagagttggtggtgttttcagcgttgaaattttgtaacagaatgaaaccaggaactgaaacagtgaattttg |
39511465 |
T |
|
| Q |
116 |
cagaggaaaggttagttggtgaagagaatgaaaagaaacggaaacgtaccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatg |
215 |
Q |
| |
|
||| |||||| |||||||||| ||||||||||| |||| ||||||||||||| |||||||||||||| ||||| ||||| || |||| |||||| | |
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|
| T |
39511466 |
cagtggaaagtttagttggtgtagagaatgaaaggaaatggaaacgtaccatataggtgttgtttgggatggttttgaattcgtaccaagattcggaacg |
39511565 |
T |
|
| Q |
216 |
gaatatccttgctgtttggtagagaggtgaagacactggtgattgacttgttactttggagctttttctgaaacttgttttcgggtaa |
303 |
Q |
| |
|
||| |||||||| ||||||||||||| ||||| |||| ||||||| ||||| || |||||||||| |||||||||||| | |||||| |
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|
| T |
39511566 |
gaaaatccttgcagtttggtagagagatgaaggaactgatgattgatttgtttctatggagcttttgctgaaacttgttatagggtaa |
39511653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 70 - 328
Target Start/End: Original strand, 39580840 - 39581110
Alignment:
| Q |
70 |
aaattttgtaacagaatgaaaccagggactgaaacattgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaacggaaacgtaccatgt |
169 |
Q |
| |
|
||||||||||||||| |||||| || | ||||| ||||||||||||| |||||| ||||||||| |||||||| ||||||| ||||||||||||||| |
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|
| T |
39580840 |
aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgt |
39580939 |
T |
|
| Q |
170 |
aggtgttgtttggtatggtagaaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaa---------gaca---ctggtga |
257 |
Q |
| |
|
| ||||||||||||| ||| ||||| ||| |||| | |||| ||||||| ||||||||||||||||||||||| || | || ||| |
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|
| T |
39580940 |
aagtgttgtttggtacggttttgaattcgtagaaagatttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatga |
39581039 |
T |
|
| Q |
258 |
ttgacttgttactttggagctttttctgaaacttgttttcgggtaagtagggtttgattcaccaatataaa |
328 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39581040 |
ttgacttgttactttggagcttttgctgaaaactgttttcggataagtagggtttgattcaccaatataaa |
39581110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 3331674 - 3331399
Alignment:
| Q |
16 |
attttaacgtaatactcttttactaaagaagagttggtggtgttttcagagttgaaattttgtaacagaatgaaaccagggactgaaacattgaattttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| || || |||||| |||||||| |||||| | || |||| |||||||| | |
|
|
| T |
3331674 |
attttaacgtaatactcttttactaaaggagagttggtggtgtttttagcgtcgaaattagttaacagaaggaaaccggaaacagaaatgttgaattt-g |
3331576 |
T |
|
| Q |
116 |
cagaggaaaggttagttggtgaagagaatgaaaagaaacggaaacgtaccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatg |
215 |
Q |
| |
|
||| |||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||| || ||| ||| || |||| || ||||| |
|
|
| T |
3331575 |
cagtggaaaggttaattggtgaagagaatgaaaggaaatggaaacgtaccatgtaggtgttgtttgggataatagtgaat--ctaccaagattcagaatg |
3331478 |
T |
|
| Q |
216 |
gaatatccttgctgtttggtagagaggtgaagacactggtgattgacttgttactttggagctttttctgaaacttgtt |
294 |
Q |
| |
|
||| || |||||| ||||||| |||||||||| |||| | ||||| ||||| || ||||||||| |||||||||||| |
|
|
| T |
3331477 |
gaaaattcttgctctttggtaaagaggtgaaggaactgattattgatttgtttctacggagcttttgctgaaacttgtt |
3331399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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