View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_72 (Length: 350)
Name: NF18243_low_72
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_72 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 54618908 - 54619120
Alignment:
| Q |
4 |
tttgtttacgcaaaccggccaagtgtgcctacattcgtgactacatagtagctatacttatgatctatattccaacaattttcatgctgaaccgtgaaag |
103 |
Q |
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| T |
54618908 |
tttgtttacgcaaaccggccaagtgtgcctacattcgtgactacatagtagctatacttatgatctatattccaacaattttcatgctgaaccgtgacag |
54619007 |
T |
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| Q |
104 |
cgatagccctcgcaccccagtcgcctcctacaacaaccaattggacctaacacacgttttggccaaacacaagggcaggggcggagggagcttcactaca |
203 |
Q |
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| T |
54619008 |
cga---ccctcgcaccccagtcgcctcctacaacaaccaattggacctaacacacgttttgaccaaacacaagggcaggggcagagggagcttcactgca |
54619104 |
T |
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| Q |
204 |
atagcttacctcccct |
219 |
Q |
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|||||||||||||||| |
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| T |
54619105 |
atagcttacctcccct |
54619120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 212 - 321
Target Start/End: Original strand, 54619520 - 54619629
Alignment:
| Q |
212 |
cctcccctgccccttgcccctcttttgtgcctatgagtgatactcaaacataatcacttgaatatagtttgttgtatgattcaacttatttcatctgcat |
311 |
Q |
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| T |
54619520 |
cctcccctgccccttgcccctcttttgtgcctatgagtgatactcaaacataatcacttgaatatagtctgttgtatgattcaacttatttcatctgcat |
54619619 |
T |
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| Q |
312 |
tagtccaccc |
321 |
Q |
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|||||||||| |
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| T |
54619620 |
tagtccaccc |
54619629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 13951107 - 13951061
Alignment:
| Q |
149 |
cctaacacacgttttggccaaacacaagggcaggggcggagggagct |
195 |
Q |
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| T |
13951107 |
cctaacacacgtttgggtcaaacgcaagggtaggggcggagggagct |
13951061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 3247 - 3201
Alignment:
| Q |
149 |
cctaacacacgttttggccaaacacaagggcaggggcggagggagct |
195 |
Q |
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| T |
3247 |
cctaacacacgtttgggtcaaacgcaagggtaggggcggagggagct |
3201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 6938345 - 6938287
Alignment:
| Q |
141 |
caattggacctaacacacgttttggccaaacacaagggcaggggcggagggagcttcac |
199 |
Q |
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| T |
6938345 |
caattgggactaacacacgtttgggccaaactcaagggcaggagcagagggagtttcac |
6938287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 39129349 - 39129296
Alignment:
| Q |
144 |
ttggacctaacacacgttttggccaaacacaagggcaggggcggagggagcttc |
197 |
Q |
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| T |
39129349 |
ttgggcctaacacacgtttgacccaaacacaagggcatgggtggagggagcttc |
39129296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 2697854 - 2697802
Alignment:
| Q |
151 |
taacacacgttttggccaaacacaagggcaggggcggagggagcttcactaca |
203 |
Q |
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| T |
2697854 |
taacacatgtttgggccaaatgcaaggtcagggacggagggagcttcactaca |
2697802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 29663197 - 29663225
Alignment:
| Q |
173 |
caagggcaggggcggagggagcttcacta |
201 |
Q |
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| T |
29663197 |
caagggcaggggcggagggagcttcacta |
29663225 |
T |
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