View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18243_low_8 (Length: 627)

Name: NF18243_low_8
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18243_low_8
NF18243_low_8
[»] chr4 (44 HSPs)
chr4 (208-588)||(51066938-51067318)
chr4 (89-169)||(24157934-24158014)
chr4 (76-181)||(4379977-4380082)
chr4 (143-206)||(24158813-24158876)
chr4 (108-200)||(53772810-53772902)
chr4 (97-172)||(31328833-31328908)
chr4 (149-207)||(142523-142581)
chr4 (147-201)||(8247698-8247752)
chr4 (157-207)||(40495091-40495141)
chr4 (147-205)||(56262476-56262534)
chr4 (146-207)||(55976162-55976223)
chr4 (147-207)||(8248517-8248577)
chr4 (147-199)||(8265365-8265417)
chr4 (147-207)||(8266182-8266242)
chr4 (71-171)||(17447714-17447814)
chr4 (147-207)||(53732431-53732491)
chr4 (149-200)||(26147031-26147082)
chr4 (154-200)||(599305-599351)
chr4 (108-174)||(4380648-4380714)
chr4 (71-173)||(43145985-43146087)
chr4 (146-200)||(47688475-47688529)
chr4 (90-207)||(5590971-5591088)
chr4 (146-207)||(20774176-20774237)
chr4 (90-207)||(48127282-48127399)
chr4 (149-201)||(24374791-24374843)
chr4 (143-207)||(31329710-31329774)
chr4 (146-198)||(55001436-55001488)
chr4 (156-207)||(19080381-19080432)
chr4 (147-206)||(53148608-53148667)
chr4 (154-200)||(2446165-2446211)
chr4 (154-200)||(5046486-5046532)
chr4 (147-201)||(30573706-30573760)
chr4 (146-200)||(47687912-47687966)
chr4 (146-207)||(12920270-12920331)
chr4 (146-207)||(24551919-24551980)
chr4 (149-206)||(40347551-40347608)
chr4 (156-200)||(2444375-2444419)
chr4 (149-201)||(7842528-7842580)
chr4 (149-201)||(9365171-9365223)
chr4 (147-199)||(16903640-16903692)
chr4 (146-218)||(37273135-37273207)
chr4 (146-182)||(43146692-43146728)
chr4 (149-201)||(47785798-47785850)
chr4 (147-207)||(56263069-56263129)
[»] chr2 (32 HSPs)
chr2 (13-204)||(9540896-9541087)
chr2 (78-207)||(9540327-9540456)
chr2 (97-201)||(8541753-8541857)
chr2 (149-205)||(24933834-24933890)
chr2 (149-200)||(22301868-22301919)
chr2 (149-207)||(9276328-9276386)
chr2 (149-207)||(29719442-29719500)
chr2 (133-207)||(33512093-33512167)
chr2 (89-171)||(34812043-34812124)
chr2 (149-201)||(1296381-1296433)
chr2 (149-200)||(15774205-15774256)
chr2 (156-207)||(27177908-27177959)
chr2 (146-200)||(18174665-18174719)
chr2 (149-199)||(26752721-26752771)
chr2 (149-207)||(38361063-38361121)
chr2 (154-207)||(29512367-29512420)
chr2 (143-207)||(26589009-26589073)
chr2 (149-200)||(1297121-1297172)
chr2 (147-182)||(5761356-5761391)
chr2 (149-200)||(9275589-9275640)
chr2 (146-200)||(11750260-11750314)
chr2 (146-200)||(15902877-15902931)
chr2 (146-200)||(18174102-18174156)
chr2 (95-201)||(20632854-20632960)
chr2 (147-201)||(22560564-22560618)
chr2 (154-200)||(29559423-29559469)
chr2 (155-200)||(11751073-11751118)
chr2 (147-184)||(22559877-22559914)
chr2 (155-200)||(23857028-23857073)
chr2 (143-183)||(8542540-8542580)
chr2 (155-207)||(22301190-22301242)
chr2 (153-205)||(29513149-29513201)
[»] chr3 (36 HSPs)
chr3 (19-184)||(2092780-2092943)
chr3 (89-207)||(48648199-48648317)
chr3 (89-198)||(51827433-51827542)
chr3 (90-201)||(30222038-30222149)
chr3 (143-201)||(48649166-48649224)
chr3 (147-200)||(13349418-13349471)
chr3 (146-207)||(21727525-21727586)
chr3 (90-169)||(11651333-11651412)
chr3 (97-168)||(41458781-41458852)
chr3 (147-205)||(48507029-48507087)
chr3 (149-201)||(37520560-37520612)
chr3 (147-207)||(48506434-48506493)
chr3 (89-182)||(6974685-6974775)
chr3 (154-201)||(14871155-14871202)
chr3 (147-197)||(981673-981723)
chr3 (149-207)||(13477053-13477111)
chr3 (146-200)||(17603171-17603225)
chr3 (147-201)||(20213528-20213582)
chr3 (143-201)||(48765063-48765121)
chr3 (146-207)||(20212976-20213037)
chr3 (154-207)||(37988222-37988275)
chr3 (149-206)||(45081402-45081459)
chr3 (155-207)||(10847287-10847339)
chr3 (155-207)||(11203206-11203258)
chr3 (145-201)||(41458035-41458091)
chr3 (147-207)||(48764473-48764533)
chr3 (146-192)||(13477774-13477820)
chr3 (149-207)||(27082772-27082830)
chr3 (147-201)||(52266450-52266504)
chr3 (146-207)||(17603957-17604018)
chr3 (154-199)||(31115603-31115648)
chr3 (117-198)||(37987238-37987319)
chr3 (155-200)||(54458670-54458715)
chr3 (154-198)||(265102-265146)
chr3 (149-201)||(46150728-46150780)
chr3 (149-197)||(52281772-52281820)
[»] chr6 (20 HSPs)
chr6 (13-167)||(10926177-10926331)
chr6 (89-200)||(33435342-33435453)
chr6 (83-167)||(10927153-10927237)
chr6 (144-207)||(2512433-2512496)
chr6 (149-207)||(19323765-19323823)
chr6 (78-205)||(13255009-13255143)
chr6 (147-207)||(10171271-10171331)
chr6 (146-200)||(21133222-21133276)
chr6 (147-201)||(26529509-26529563)
chr6 (143-201)||(33436266-33436324)
chr6 (147-200)||(10171962-10172015)
chr6 (147-200)||(26528825-26528878)
chr6 (116-182)||(20833316-20833383)
chr6 (146-200)||(3623177-3623231)
chr6 (146-200)||(8488471-8488525)
chr6 (155-201)||(8489284-8489330)
chr6 (147-201)||(19311823-19311877)
chr6 (143-201)||(20833959-20834017)
chr6 (146-207)||(19653965-19654026)
chr6 (143-207)||(19310996-19311060)
[»] chr1 (35 HSPs)
chr1 (90-201)||(25671964-25672075)
chr1 (90-201)||(50271723-50271834)
chr1 (143-206)||(34309223-34309286)
chr1 (143-201)||(25469079-25469137)
chr1 (147-200)||(28181535-28181588)
chr1 (146-207)||(30663972-30664033)
chr1 (143-207)||(27256705-27256769)
chr1 (143-205)||(34308470-34308532)
chr1 (124-201)||(37852524-37852601)
chr1 (149-200)||(13262835-13262886)
chr1 (76-183)||(40022169-40022276)
chr1 (154-200)||(4439210-4439256)
chr1 (149-207)||(7406240-7406298)
chr1 (154-207)||(7559203-7559256)
chr1 (156-205)||(17171928-17171977)
chr1 (147-200)||(32038479-32038532)
chr1 (146-210)||(30663350-30663414)
chr1 (149-200)||(4135543-4135594)
chr1 (154-201)||(11548801-11548848)
chr1 (156-207)||(46391872-46391923)
chr1 (154-200)||(4433851-4433897)
chr1 (147-201)||(13263513-13263567)
chr1 (143-201)||(25671171-25671229)
chr1 (154-200)||(49680813-49680859)
chr1 (155-200)||(12760778-12760823)
chr1 (146-207)||(24991965-24992026)
chr1 (147-200)||(28182069-28182122)
chr1 (155-200)||(36390372-36390417)
chr1 (155-211)||(10120774-10120830)
chr1 (148-200)||(10121550-10121602)
chr1 (155-207)||(17172667-17172719)
chr1 (155-207)||(19172580-19172632)
chr1 (147-207)||(25468505-25468565)
chr1 (155-187)||(47969351-47969383)
chr1 (149-205)||(49681672-49681728)
[»] chr5 (33 HSPs)
chr5 (90-197)||(22799699-22799806)
chr5 (143-207)||(19360468-19360532)
chr5 (146-207)||(19128765-19128826)
chr5 (90-171)||(41045415-41045496)
chr5 (143-207)||(237813-237877)
chr5 (149-205)||(1554081-1554137)
chr5 (149-201)||(4084881-4084933)
chr5 (143-207)||(19359699-19359763)
chr5 (90-182)||(31082683-31082775)
chr5 (132-207)||(7632090-7632165)
chr5 (143-201)||(234702-234760)
chr5 (90-200)||(19366505-19366615)
chr5 (71-200)||(29088538-29088667)
chr5 (149-205)||(6476789-6476845)
chr5 (146-200)||(17071226-17071280)
chr5 (149-207)||(27364485-27364543)
chr5 (146-200)||(34600263-34600317)
chr5 (146-207)||(1281831-1281892)
chr5 (155-212)||(13306273-13306330)
chr5 (159-207)||(10554517-10554565)
chr5 (147-207)||(28705875-28705935)
chr5 (136-199)||(1283485-1283548)
chr5 (154-201)||(29046030-29046077)
chr5 (89-160)||(31036082-31036153)
chr5 (143-198)||(33005525-33005580)
chr5 (146-200)||(2313949-2314003)
chr5 (146-200)||(17071789-17071843)
chr5 (95-207)||(235421-235534)
chr5 (147-200)||(235594-235647)
chr5 (95-207)||(237038-237151)
chr5 (175-207)||(6476064-6476096)
chr5 (146-198)||(22798905-22798957)
chr5 (156-200)||(43510234-43510278)
[»] chr7 (37 HSPs)
chr7 (90-184)||(31954233-31954327)
chr7 (143-207)||(30661448-30661512)
chr7 (149-208)||(1417602-1417661)
chr7 (143-205)||(37949602-37949664)
chr7 (146-207)||(13785589-13785650)
chr7 (143-212)||(25599012-25599081)
chr7 (143-207)||(19068388-19068452)
chr7 (149-205)||(38225974-38226030)
chr7 (155-205)||(3689276-3689326)
chr7 (147-207)||(45099890-45099950)
chr7 (143-202)||(19067637-19067696)
chr7 (146-201)||(21496979-21497034)
chr7 (149-200)||(27948448-27948499)
chr7 (116-207)||(36378807-36378898)
chr7 (147-201)||(26636104-26636158)
chr7 (146-200)||(40273562-40273616)
chr7 (149-207)||(46428182-46428240)
chr7 (155-200)||(3029203-3029248)
chr7 (147-200)||(3772523-3772576)
chr7 (146-207)||(47719700-47719761)
chr7 (149-201)||(7668483-7668535)
chr7 (143-207)||(23889799-23889863)
chr7 (151-207)||(23901095-23901151)
chr7 (149-201)||(25343238-25343290)
chr7 (152-207)||(3688379-3688434)
chr7 (149-200)||(25342499-25342550)
chr7 (149-200)||(25343305-25343356)
chr7 (117-184)||(31954302-31954369)
chr7 (90-201)||(31955157-31955267)
chr7 (154-201)||(46428821-46428868)
chr7 (147-201)||(26636857-26636911)
chr7 (154-200)||(30660595-30660641)
chr7 (154-200)||(37950471-37950517)
chr7 (132-198)||(43065098-43065164)
chr7 (146-207)||(14305085-14305146)
chr7 (154-207)||(25599823-25599876)
chr7 (147-183)||(3027993-3028029)
[»] scaffold0085 (4 HSPs)
scaffold0085 (143-205)||(22063-22125)
scaffold0085 (147-206)||(15019-15078)
scaffold0085 (147-201)||(15083-15137)
scaffold0085 (147-183)||(21501-21537)
[»] chr8 (29 HSPs)
chr8 (155-207)||(17724761-17724813)
chr8 (149-200)||(3043245-3043296)
chr8 (143-201)||(8372915-8372973)
chr8 (149-207)||(27441462-27441520)
chr8 (147-200)||(11686960-11687013)
chr8 (97-169)||(531422-531494)
chr8 (146-207)||(39860106-39860169)
chr8 (146-201)||(37732828-37732883)
chr8 (146-200)||(3043960-3044014)
chr8 (149-207)||(3417353-3417411)
chr8 (143-201)||(8373685-8373743)
chr8 (147-201)||(9197816-9197870)
chr8 (155-205)||(17725658-17725708)
chr8 (143-201)||(31641513-31641571)
chr8 (146-207)||(9197091-9197152)
chr8 (155-208)||(26652288-26652341)
chr8 (147-200)||(31602019-31602072)
chr8 (146-207)||(32414519-32414580)
chr8 (154-207)||(41974636-41974689)
chr8 (147-207)||(31642083-31642143)
chr8 (150-201)||(15198289-15198340)
chr8 (147-198)||(26654374-26654425)
chr8 (149-200)||(38576300-38576351)
chr8 (149-207)||(8996972-8997030)
chr8 (151-201)||(22320376-22320426)
chr8 (154-207)||(3165125-3165178)
chr8 (147-203)||(45916-45972)
chr8 (155-207)||(27442145-27442197)
chr8 (146-182)||(34478872-34478908)
[»] scaffold0418 (1 HSPs)
scaffold0418 (157-207)||(6891-6941)
[»] scaffold0096 (1 HSPs)
scaffold0096 (95-207)||(39891-40004)
[»] scaffold0002 (1 HSPs)
scaffold0002 (148-201)||(428899-428952)
[»] scaffold0176 (1 HSPs)
scaffold0176 (155-207)||(26587-26639)
[»] scaffold1207 (1 HSPs)
scaffold1207 (155-202)||(1587-1634)
[»] scaffold0504 (1 HSPs)
scaffold0504 (143-207)||(5372-5436)


Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 208 - 588
Target Start/End: Original strand, 51066938 - 51067318
Alignment:
Q  208 tttttgaatatacaattttcattaacgtatctctttggatatacattttcattaacaaacaattttcattttgtatctttggttctcaaatatgcttata 307  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51066938 tttttgaatatacagttttcattaacgtatctctttggatatacattttcattaacaaacaattttcattttgtatctttggttctcaaatatgcttata 51067037  T
Q  308 cgattagtgcaccttcggatcatccaaccgtagacatttactcacatttaacttggaacgaagtagtgcccctgaaaatgaatgtatttgtgtggagact 407  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  51067038 cgattactgcaccttcagatcatccaaccgtagacatttactcacatttaacttggaacgaagtagtgcacctgaaaatgaatgtatttgtgtggagact 51067137  T
Q  408 attaaataaaagaatcctcactaaggataatctcagtaatcgtcgtggaatggtgccgtctagttcattgctttgctcgagaggatgtaggaaggatgaa 507  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  51067138 attaaataaaagaatcctcactaagaataatctcagtaatcgtcgtggaatgatgccgtctagttcattgctttgctcgagaggatgtaggaaggatgaa 51067237  T
Q  508 actattaattatttgtttcttggatgtgattattttggaagtgtttggaatcttgttcttcgatgaatgggtgggtatctc 588  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51067238 actattaattatttgtttcttggatgtgattattttggaagtgtttggaatcttgttcttcgatgaatgggtgggtatctc 51067318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 24158014 - 24157934
Alignment:
Q  89 agtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacg 169  Q
    |||||||||||||||||||||||||| |||||||||||| |  ||| |||| | |||||||||||||||||||||||||||    
T  24158014 agtggttcacatgatattctaaatgaacaaatataagcctttagataaaaagaaatcaacggttaagatttggtgtcaacg 24157934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 4380082 - 4379977
Alignment:
Q  76 acaatcgtgtgtgagtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttg 175  Q
    ||||||||||| | |||||||||||| |||| ||||| | |||||| ||||| |  |||||||| | |||||||||||| |||||||||||| ||||| |    
T  4380082 acaatcgtgtgagggtggttcacatggtattttaaataaacaaatacaagcccttagatcaaaagagatcaacggttaacatttggtgtcaatgaattcg 4379983  T
Q  176 ttgaca 181  Q
    ||||||    
T  4379982 ttgaca 4379977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 24158813 - 24158876
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctca 206  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| |||| |||||||| ||||    
T  24158813 atcaacggttaagatttggtgtcaacgaatctgttgacacctggtgtcaatggatcctgactca 24158876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 53772902 - 53772810
Alignment:
Q  108 taaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||| |||| | ||||| | ||||||||| | ||||||| |||| |||||||||||||||||  ||||||||| ||| ||||||||||||    
T  53772902 taaatgaacaaacaaaagcctttggatcaaaagaaatcaacgattaatatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 53772810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 31328908 - 31328833
Alignment:
Q  97 acatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaat 172  Q
    |||||||||| ||||||| |||||||||||| || ||| |||| | ||||||| |||| |||||||||||||||||    
T  31328908 acatgatattttaaatgaacaaatataagccttcagattaaaagaaatcaacgtttaaaatttggtgtcaacgaat 31328833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 142523 - 142581
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||||||||||||||| ||||| ||||||||| ||| |||||||||||| ||||||    
T  142523 ggttaagatttggtgtcaatgaattcgttgacacccggtgtcaacggatcctatctcat 142581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 8247752 - 8247698
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    ||||||||||||| ||||||||||||  ||||||||||||| |||||||||||||    
T  8247752 acggttaagattttgtgtcaacgaatccgttgacaccaggtgtcaacggatcctg 8247698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 40495141 - 40495091
Alignment:
Q  157 tttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  40495141 tttggtgtcaacgaatttgttgacacctggtgtcaacggatcctgactcat 40495091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 56262534 - 56262476
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctc 205  Q
    |||||| ||||||||||||||||||||  |||||||| ||| |||||||||||||||||    
T  56262534 acggttgagatttggtgtcaacgaattcattgacacctggtgtcaacggatcctgtctc 56262476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 55976223 - 55976162
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| ||||||||||||||||||||||  ||||||||| ||| ||||||||| |||||||||    
T  55976223 aacgtttaagatttggtgtcaacgaatccgttgacacctggtgtcaacggattctgtctcat 55976162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 8248517 - 8248577
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||||||||||||||||||||||  ||||||| | ||| ||||||||||||| |||||    
T  8248517 acggttaagatttggtgtcaacgaatccgttgacatctggtgtcaacggatcctgactcat 8248577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 8265417 - 8265365
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcc 199  Q
    ||||||||||||| ||||||||||||  ||||||||||||| |||||||||||    
T  8265417 acggttaagattttgtgtcaacgaatccgttgacaccaggtgtcaacggatcc 8265365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 8266182 - 8266242
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||||||||||||||||||||||  ||||||| | ||| ||||||||||||| |||||    
T  8266182 acggttaagatttggtgtcaacgaatccgttgacatctggtgtcaacggatcctgactcat 8266242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 17447814 - 17447714
Alignment:
Q  71 gaaggacaatcgtgtgtgagtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacga 170  Q
    |||||| |||| |||| |||| |||||| || |||| ||||||| ||||||||| || |  ||| |||| | |||||||||||| |||||||||||||||    
T  17447814 gaaggataatcctgtgagagtagttcacgtggtattttaaatgaacaaatataaacccttagattaaaagagatcaacggttaatatttggtgtcaacga 17447715  T
Q  171 a 171  Q
    |    
T  17447714 a 17447714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 53732491 - 53732431
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||| |||||| ||||||||||||  ||||||||| ||| |||||||||||||||||||    
T  53732491 acggttgagatttagtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctcat 53732431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 26147031 - 26147082
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||| |||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  26147031 ggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcct 26147082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 599305 - 599351
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||||||||||||||||  ||||||||||||| ||||||||||||    
T  599305 agatttggtgtcaacgaatccgttgacaccaggtgtcaacggatcct 599351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 4380648 - 4380714
Alignment:
Q  108 taaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaattt 174  Q
    ||||||| |||||| ||||| |  |||||||| | |||||||||||| |||||||||||||||||||    
T  4380648 taaatgaacaaatacaagcccttagatcaaaagagatcaacggttaatatttggtgtcaacgaattt 4380714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 43146087 - 43145985
Alignment:
Q  71 gaaggacaatcgtgtgtgagtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacga 170  Q
    |||||| |||| |||| |||| |||||| |  |||| ||||||| |||| ||||||  |  |||||||| | |||||||||||| |||||||||||||||    
T  43146087 gaaggataatcctgtgagagtagttcacgtagtattttaaatgaacaaacataagctcttagatcaaaagagatcaacggttaacatttggtgtcaacga 43145988  T
Q  171 att 173  Q
    |||    
T  43145987 att 43145985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 47688475 - 47688529
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||| |||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  47688475 aacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 47688529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 90 - 207
Target Start/End: Original strand, 5590971 - 5591088
Alignment:
Q  90 gtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtct 189  Q
    ||||||||||| ||||||| |||||  ||||||||||  |  |||||||| | |||||| ||||| ||||| | ||||| ||||  |||||||| ||| |    
T  5590971 gtggttcacattatattcttaatgaataaatataagcatttagatcaaaagaaatcaacagttaaaatttgatatcaacaaattcattgacacctggtgt 5591070  T
Q  190 caacggatcctgtctcat 207  Q
    ||||||||| || |||||    
T  5591071 caacggatcttgactcat 5591088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 20774176 - 20774237
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||| |||||||||||||||||||  ||||||||| ||| |||| |||||||| |||||    
T  20774176 aacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctgactcat 20774237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 48127399 - 48127282
Alignment:
Q  90 gtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtct 189  Q
    ||||||||||| ||||||| |||||  ||||||||||  |  |||||||| | |||||| ||||| ||||| | ||||| ||||  |||||||| ||| |    
T  48127399 gtggttcacattatattcttaatgaataaatataagcatttagatcaaaagaaatcaacagttaaaatttgatatcaacaaattcattgacacctggtgt 48127300  T
Q  190 caacggatcctgtctcat 207  Q
    ||||||||| || |||||    
T  48127299 caacggatcttgactcat 48127282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 24374843 - 24374791
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||| |||||||||||||||||||| ||||||| | ||| |||||||||||||    
T  24374843 ggttgagatttggtgtcaacgaattcgttgacagctggtgtcaacggatcctg 24374791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 31329710 - 31329774
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||| ||||| |||||||||| |||||||  ||||||||| ||| ||||||||||||| |||||    
T  31329710 atcaatggttaggatttggtgttaacgaatccgttgacacctggtgtcaacggatcctgactcat 31329774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 55001436 - 55001488
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatc 198  Q
    |||||||||||||| ||||||||||||  ||||||||| ||| ||||||||||    
T  55001436 aacggttaagatttagtgtcaacgaatccgttgacacctggtgtcaacggatc 55001488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 19080432 - 19080381
Alignment:
Q  156 atttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||||||||||  ||||||||| ||| ||||| |||||||||||||    
T  19080432 atttggtgtcaacgaatccgttgacacctggtgtcaacagatcctgtctcat 19080381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 53148608 - 53148667
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctca 206  Q
    |||||| ||||||||||||||||||| |||||||||| | | |||| |||||||| ||||    
T  53148608 acggttgagatttggtgtcaacgaatctgttgacacctgatgtcaatggatcctgactca 53148667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 2446165 - 2446211
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||||||| ||||||| |||||||||| ||| ||||||||||||    
T  2446165 agatttggtgttaacgaatctgttgacacctggtgtcaacggatcct 2446211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 5046486 - 5046532
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||||||||||||||| |||||| ||| ||| ||||||||||||    
T  5046486 agatttggtgtcaacgaatctgttgatacctggtgtcaacggatcct 5046532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 30573706 - 30573760
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||||| |||||||||||||||||||  ||||||||| ||| |||| ||||||||    
T  30573706 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctg 30573760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 47687966 - 47687912
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||||  ||||||||||||||||||| ||| ||||| ||| ||||||||||||    
T  47687966 aacggttgcgatttggtgtcaacgaattcgttaacacctggtgtcaacggatcct 47687912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 12920270 - 12920331
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||| ||||||||||||||||||| |||| | ||| ||| ||||| |||||| ||||||    
T  12920270 aacggttgagatttggtgtcaacgaatctgttaatacctggtgtcaaccgatcctatctcat 12920331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 24551919 - 24551980
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| |||||||||||||||||| |||  ||||||||| ||| |||| ||||||| ||||||    
T  24551919 aacgtttaagatttggtgtcaacaaatccgttgacacctggtgtcaatggatcctatctcat 24551980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 40347608 - 40347551
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctca 206  Q
    |||| ||||||||||| |||| ||| ||||||||| ||| |||| |||||||||||||    
T  40347608 ggttgagatttggtgtaaacggattcgttgacacctggtgtcaatggatcctgtctca 40347551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 2444419 - 2444375
Alignment:
Q  156 atttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||||||||||||||  ||||||||| ||| ||||||||||||    
T  2444419 atttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 2444375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 7842528 - 7842580
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||| |||||||||||||||||||| ||||||||| | | |||| ||||||||    
T  7842528 ggttgagatttggtgtcaacgaattcgttgacacctgatgtcaatggatcctg 7842580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 9365223 - 9365171
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||| ||||||||||||||| |||| ||||||||| ||| | |||||||||||    
T  9365223 ggttgagatttggtgtcaacaaattcgttgacacctggtgttaacggatcctg 9365171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 16903640 - 16903692
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcc 199  Q
    |||||| |||||||||||||||||||  ||||||||| ||| |||||| ||||    
T  16903640 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgaatcc 16903692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 37273207 - 37273135
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcattttttgaatat 218  Q
    |||| ||||||||||||||||||| ||   |||||| | ||| |||||| ||| ||||||||||||| |||||    
T  37273207 aacgtttaagatttggtgtcaacggatccattgacatctggtgtcaacgaatcatgtctcattttttaaatat 37273135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 43146728 - 43146692
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacac 182  Q
    |||||||||||||||||||||||||||  ||||||||    
T  43146728 aacggttaagatttggtgtcaacgaatccgttgacac 43146692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 47785798 - 47785850
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||| |||||||||||||||||||  ||||||||| ||| ||||| |||||||    
T  47785798 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacagatcctg 47785850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 56263069 - 56263129
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||| ||||||||||| |||| ||| ||||||||| ||| |||| ||| ||||||||||    
T  56263069 acggttgagatttggtgtaaacggattcgttgacacctggtgtcaatggaacctgtctcat 56263129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 9540896 - 9541087
Alignment:
Q  13 gagatgaaggggtagaatgaaagaacagagaaattgagatcgcgatttggaaaagacagaaggacaatcgtgtgtgagtggttcacatgatattctaaat 112  Q
    |||| |||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9540896 gagaagaaggggtagcatgaacgaacagagaaattgagatcgcgtttttgaaaagacagaaggacaatcgtgtgtgagtggttcacatgatattctaaat 9540995  T
Q  113 gagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtct 204  Q
    || |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||| |  ||  |||||||||||||||    
T  9540996 gaacaaatataagccatcggatcaaaagatatcaacggctaagatttggtgtcaacgaattcgttgacatctcgtgccaacggatcctgtct 9541087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 78 - 207
Target Start/End: Complemental strand, 9540456 - 9540327
Alignment:
Q  78 aatcgtgtgtgagtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgtt 177  Q
    ||||||||| || | | ||||||||| ||||||||||||||||||||||| || |||||| | | ||||| ||||||||||||||||||||||||| |||    
T  9540456 aatcgtgtgagaatagctcacatgattttctaaatgagcaaatataagccttcagatcaagagaaatcaatggttaagatttggtgtcaacgaattcgtt 9540357  T
Q  178 gacaccaggtctcaacggatcctgtctcat 207  Q
    |||||| ||| |||||||||||||||||||    
T  9540356 gacacctggtgtcaacggatcctgtctcat 9540327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 8541857 - 8541753
Alignment:
Q  97 acatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacgga 196  Q
    |||||||||| |||||||  |||||||||   | ||||||||| | ||||||| ||||||||| ||||||||||||| ||||| ||| | | ||||||||    
T  8541857 acatgatattttaaatgaataaatataagtttttggatcaaaagaaatcaacgattaagattttgtgtcaacgaattcgttgagacctgatgtcaacgga 8541758  T
Q  197 tcctg 201  Q
    |||||    
T  8541757 tcctg 8541753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 24933890 - 24933834
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctc 205  Q
    |||| |||||||||||||| ||||| ||||||||||||| |||||||||||||||||    
T  24933890 ggttgagatttggtgtcaatgaattcgttgacaccaggtgtcaacggatcctgtctc 24933834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 22301868 - 22301919
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  22301868 ggttaagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcct 22301919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 9276328 - 9276386
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| |||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||    
T  9276328 ggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgactcat 9276386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 29719500 - 29719442
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| |||||||||||||||||||  ||||||||| ||| |||||||||||||||||||    
T  29719500 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctcat 29719442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 33512167 - 33512093
Alignment:
Q  133 atcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||| | ||||||| |||| |||| ||||||||||||| |||||||| |||| ||||||||||||| |||||    
T  33512167 atcaaaagaaatcaacgattaatatttagtgtcaacgaattcgttgacactaggtgtcaacggatcctgactcat 33512093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 34812124 - 34812043
Alignment:
Q  89 agtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaa 171  Q
    |||||||||||||||||| ||||||| ||||||||| || || ||| |||| | ||||| | |||||||||||||||||||||    
T  34812124 agtggttcacatgatatt-taaatgaacaaatataaaccttcagattaaaagaaatcaaagcttaagatttggtgtcaacgaa 34812043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 1296433 - 1296381
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||| |||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  1296433 ggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctg 1296381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 15774256 - 15774205
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||| ||||||||||||||| |||| ||||||||||||| ||||||||||||    
T  15774256 ggttgagatttggtgtcaacaaattcgttgacaccaggtgtcaacggatcct 15774205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 27177959 - 27177908
Alignment:
Q  156 atttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||||||||||| ||||||||| ||| |||||||||||| ||||||    
T  27177959 atttggtgtcaacgaattcgttgacacctggtgtcaacggatcctatctcat 27177908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 18174665 - 18174719
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||| |||||||||||||||||||| ||||||||| | | ||||||||||||    
T  18174665 aacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatcct 18174719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 26752721 - 26752771
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcc 199  Q
    |||||||||||| |||||||||||| ||||||||| ||| |||||||||||    
T  26752721 ggttaagatttgatgtcaacgaattcgttgacacctggtgtcaacggatcc 26752771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 38361121 - 38361063
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| |||||||||||||||||||| ||||||||| | | |||||| ||||||||||||    
T  38361121 ggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacgtatcctgtctcat 38361063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 29512420 - 29512367
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||| || |||||    
T  29512420 agatttggtgtcaacaaattcgttgacaccaggtgtcaacggatcatgactcat 29512367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 26589009 - 26589073
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||||| |||||| ||||||||||  ||||||||  ||| |||||||||||| ||||||    
T  26589009 atcaacggttaatatttggagtcaacgaatccgttgacacttggtgtcaacggatcctatctcat 26589073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 1297121 - 1297172
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||| |||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  1297121 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 1297172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 182
Target Start/End: Complemental strand, 5761391 - 5761356
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacac 182  Q
    |||||||||||| |||||||||||||||||||||||    
T  5761391 acggttaagattcggtgtcaacgaatttgttgacac 5761356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 9275640 - 9275589
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||| |||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  9275640 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 9275589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 11750314 - 11750260
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||| |||||||||||||||||||  ||||||||| ||| |||| |||||||    
T  11750314 aacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcct 11750260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 15902877 - 15902931
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||| ||||||||| ||||||||||||  ||||||||| ||| ||||||||||||    
T  15902877 aacgcttaagattttgtgtcaacgaatccgttgacacctggtgtcaacggatcct 15902931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 18174156 - 18174102
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||||  ||||||||||||||||||| ||| ||||| ||| ||||||||||||    
T  18174156 aacggttgcgatttggtgtcaacgaattcgttaacacctggtgtcaacggatcct 18174102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 20632854 - 20632960
Alignment:
Q  95 tcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacg 194  Q
    |||||||||||| ||| ||| ||||||||| || |  |||||||  | ||||||||| || ||||| |||||| | ||| ||| ||||| ||| ||||||    
T  20632854 tcacatgatattttaattgaacaaatataaacctttagatcaaacgaaatcaacggtcaatatttgatgtcaatggattcgttaacacctggtgtcaacg 20632953  T
Q  195 gatcctg 201  Q
    |||||||    
T  20632954 gatcctg 20632960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 22560564 - 22560618
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||||| |||||||||||||||||||  ||||||||| | | |||||||||||||    
T  22560564 acggttgagatttggtgtcaacgaatccgttgacacctgatgtcaacggatcctg 22560618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 29559423 - 29559469
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||||||||||||||||| ||||||||| ||| ||||| ||||||    
T  29559423 agatttggtgtcaacgaattcgttgacacctggtgtcaacagatcct 29559469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 11751073 - 11751118
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||||||| |||||||| ||||||||| ||| ||||||||||||    
T  11751073 gatttggtgttaacgaattcgttgacacctggtgtcaacggatcct 11751118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 22559914 - 22559877
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacacca 184  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  22559914 acggttgagatttggtgtcaacgaatctgttgacacca 22559877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 23857028 - 23857073
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||||||||||| |||  ||||||||||||| ||||||||||||    
T  23857028 gatttggtgtcaaccaatccgttgacaccaggtgtcaacggatcct 23857073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 8542540 - 8542580
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacacc 183  Q
    |||||||||| |||||||||||||||||||  |||||||||    
T  8542540 atcaacggttgagatttggtgtcaacgaatccgttgacacc 8542580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 22301242 - 22301190
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||| |||| ||| ||||||||| ||| ||||||||||||| |||||    
T  22301242 gatttggtgttaacggattcgttgacacctggtgtcaacggatcctgactcat 22301190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 29513149 - 29513201
Alignment:
Q  153 aagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctc 205  Q
    ||||||||||||||||||||  ||||||||| ||| |||| ||||||| ||||    
T  29513149 aagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctatctc 29513201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 2092780 - 2092943
Alignment:
Q  19 aaggggtagaatgaaagaacagagaaattgagatcgcgatttggaaaagacagaaggacaatcgtgtgtgagtggttcacatgatattctaaatgagcaa 118  Q
    ||||||||||||||||||| | | |||||||||||  | |||||| |||||||||||| ||| ||||||||||||||||||||||| | |||||||||||    
T  2092780 aaggggtagaatgaaagaaaaaa-aaattgagatcaagttttggagaagacagaaggataatagtgtgtgagtggttcacatgatagtttaaatgagcaa 2092878  T
Q  119 atataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacacca 184  Q
    |||||| | ||| ||| |||| | ||||||| |||||||||| |||||||||||  ||||||||||    
T  2092879 atataatctatcagat-aaaaaaaatcaacgattaagatttgatgtcaacgaatccgttgacacca 2092943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 89 - 207
Target Start/End: Complemental strand, 48648317 - 48648199
Alignment:
Q  89 agtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtc 188  Q
    |||||||||||||||||||||||||| |||||||||||| |  ||| |||| | ||||||||||||||||||||||||||||||  ||||||||| |||     
T  48648317 agtggttcacatgatattctaaatgaacaaatataagcctttagataaaaagaaatcaacggttaagatttggtgtcaacgaatccgttgacacctggtg 48648218  T
Q  189 tcaacggatcctgtctcat 207  Q
    ||||||||||||| |||||    
T  48648217 tcaacggatcctgactcat 48648199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 51827433 - 51827542
Alignment:
Q  89 agtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtc 188  Q
    ||||||||| |||||||||||||||| |||||||||| | |  ||| |||| | ||||||||||||||||||||| ||||||||  |||||||||||||     
T  51827433 agtggttcatatgatattctaaatgaacaaatataagtctttagataaaaagaaatcaacggttaagatttggtgacaacgaatccgttgacaccaggtg 51827532  T
Q  189 tcaacggatc 198  Q
    ||||||||||    
T  51827533 tcaacggatc 51827542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 30222038 - 30222149
Alignment:
Q  90 gtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtct 189  Q
    |||||| |||||||||| ||||||| |||||||||||| || ||| |||| | ||||||| |||| ||||||| ||||||||| | |||||||| ||| |    
T  30222038 gtggtttacatgatattttaaatgaacaaatataagccttcagattaaaagaaatcaacgcttaaaatttggtatcaacgaatctattgacacctggtgt 30222137  T
Q  190 caacggatcctg 201  Q
    ||||| ||||||    
T  30222138 caacgaatcctg 30222149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 48649166 - 48649224
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||||||    
T  48649166 atcaacggttaagatttggtgtcaacgaatctgttgacacctggtgtcaatggatcctg 48649224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 13349471 - 13349418
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||    
T  13349471 acggttaagatttggtgtcaacgaatttgttgacacctggtatcaaccgatcct 13349418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 21727525 - 21727586
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| ||||||||||||||||||||||  ||||||||| ||| |||||||||||||||||||    
T  21727525 aacgcttaagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctcat 21727586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 11651412 - 11651333
Alignment:
Q  90 gtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacg 169  Q
    ||||||||||| ||||||| |||||  ||||||||||| |  |||||||| | |||||| ||||||||||||||||||||    
T  11651412 gtggttcacattatattcttaatgaataaatataagcctttagatcaaaagaaatcaacagttaagatttggtgtcaacg 11651333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 41458781 - 41458852
Alignment:
Q  97 acatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaac 168  Q
    |||||||||| |||||||  ||||||||||| | ||||||||| | ||||||| ||||||||||||||||||    
T  41458781 acatgatattttaaatgaataaatataagcctttggatcaaaagaaatcaacgattaagatttggtgtcaac 41458852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 48507029 - 48507087
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctc 205  Q
    |||||| ||||||||||||||||||||  |||||||| ||| |||||||||||||||||    
T  48507029 acggttgagatttggtgtcaacgaattcattgacacctggtgtcaacggatcctgtctc 48507087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 37520560 - 37520612
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||| |||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  37520560 ggttgagatttggtgtcaacgaattcgttgacacctggtatcaacggatcctg 37520612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 48506493 - 48506434
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||| |||||||||||||||||||| |||||||||| || |||||||||| ||||||||    
T  48506493 acggttgagatttggtgtcaacgaattcgttgacacca-gtgtcaacggatcatgtctcat 48506434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 6974685 - 6974775
Alignment:
Q  89 agtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacac 182  Q
    ||||||| |||||||||| |||||||  ||||||||||| | ||||||||| | ||   || ||||||||||||||||||||||  ||||||||    
T  6974685 agtggttaacatgatattttaaatgaataaatataagcctttggatcaaaagaaat---cgattaagatttggtgtcaacgaatccgttgacac 6974775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 14871202 - 14871155
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  14871202 agatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctg 14871155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 981723 - 981673
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggat 197  Q
    |||||| |||||||||||||||||||| ||||||||| ||| |||||||||    
T  981723 acggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggat 981673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 13477111 - 13477053
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||| ||||||||||||| ||||| ||||||||| ||| ||||||||||||| |||||    
T  13477111 ggttaggatttggtgtcaatgaattcgttgacacctggtgtcaacggatcctgactcat 13477053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 17603225 - 17603171
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||| ||||||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  17603225 aacgtttaagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 17603171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 20213528 - 20213582
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    ||||||| ||||||||||||||||||| || |||||| ||| |||||||||||||    
T  20213528 acggttaggatttggtgtcaacgaattcgtcgacacctggtgtcaacggatcctg 20213582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 48765063 - 48765121
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    ||||||||||||||||||||||||||||||   |||||||| ||| |||| ||||||||    
T  48765063 atcaacggttaagatttggtgtcaacgaatccattgacacctggtgtcaatggatcctg 48765121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 20213037 - 20212976
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||| || ||||||||||||||||||| ||||||||| ||| ||||||||| ||| |||||    
T  20213037 aacggataggatttggtgtcaacgaattcgttgacacctggtgtcaacggattctgactcat 20212976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 37988222 - 37988275
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||||||||||||| ||||||||| ||| |||| |||||||| |||||    
T  37988222 agatttggtgtcaacgaattcgttgacacctggtgtcaatggatcctgactcat 37988275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 45081402 - 45081459
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctca 206  Q
    |||| |||||||||||||||||||  |||||||| |||| ||||||||||||| ||||    
T  45081402 ggttgagatttggtgtcaacgaatccgttgacactaggtgtcaacggatcctgactca 45081459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 10847339 - 10847287
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||| |||| |||||||| ||||||||||||| ||||||||||||| |||||    
T  10847339 gatttagtgttaacgaattcgttgacaccaggtgtcaacggatcctgactcat 10847287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 11203206 - 11203258
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||| |||||||||||||||||||| ||| ||||||||| ||| |||||    
T  11203206 gatttggtttcaacgaatttgttgacacctggtgtcaacggattctgactcat 11203258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 41458091 - 41458035
Alignment:
Q  145 caacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||||||| |||||||||||||||||||  ||||||||| ||| |||||| ||||||    
T  41458091 caacggttgagatttggtgtcaacgaatccgttgacacctggtatcaacgaatcctg 41458035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 48764533 - 48764473
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||| |||||||||||||||||||| ||||||||| | | |||| |||||||| |||||    
T  48764533 acggttgagatttggtgtcaacgaattcgttgacacctgatgtcaatggatcctgactcat 48764473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 13477774 - 13477820
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaa 192  Q
    ||||||| |||||||||||||||||||| ||||||||| ||| ||||    
T  13477774 aacggttgagatttggtgtcaacgaattcgttgacacctggtgtcaa 13477820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 27082830 - 27082772
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||| ||||||||||||||||||| |||||||||  || |||| |||||||| |||||    
T  27082830 ggttaggatttggtgtcaacgaattcgttgacacctagtgtcaatggatcctgactcat 27082772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 52266450 - 52266504
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||||| |||||||||||||||||||| ||| ||||| ||| | |||||||||||    
T  52266450 acggttgagatttggtgtcaacgaattcgttaacacctggtgttaacggatcctg 52266504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 17603957 - 17604018
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| ||||||||||||||||||||||  ||||||||| ||| |||  ||||||| ||||||    
T  17603957 aacgtttaagatttggtgtcaacgaatccgttgacacctggtgtcattggatcctatctcat 17604018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 31115603 - 31115648
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcc 199  Q
    ||||||||||||||||||| ||||||||||  || |||||||||||    
T  31115603 agatttggtgtcaacgaatctgttgacacctagtgtcaacggatcc 31115648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 37987319 - 37987238
Alignment:
Q  117 aaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatc 198  Q
    |||||| |||| | ||||||||  | |||||||| ||| |||||||||||||||||   |||||||| ||| ||||||||||    
T  37987319 aaatattagcctttggatcaaataaaatcaacggataaaatttggtgtcaacgaatccattgacacctggtgtcaacggatc 37987238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 54458670 - 54458715
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||||||||||| |||  ||||||||||||| ||||||||||||    
T  54458670 gatttggtgtcaaccaatccgttgacaccaggtgtcaacggatcct 54458715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 265102 - 265146
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatc 198  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||    
T  265102 agatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 265146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 46150728 - 46150780
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||| |||||||||||||||||||  |||||||||  || |||||||||||||    
T  46150728 ggttgagatttggtgtcaacgaatccgttgacacctagtgtcaacggatcctg 46150780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 52281820 - 52281772
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggat 197  Q
    |||| |||| ||||||||||||||  ||||||||||||| |||||||||    
T  52281820 ggttgagatctggtgtcaacgaatccgttgacaccaggtatcaacggat 52281772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 10926331 - 10926177
Alignment:
Q  13 gagatgaaggggtagaatgaaagaacagagaaattgagatcgcgatttggaaaagacagaaggacaatcgtgtgtgagtggttcacatgatattctaaat 112  Q
    |||| |||||||||||||| ||||| | | |||| |||||  ||  |||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||    
T  10926331 gagaagaaggggtagaatggaagaatataaaaatcgagatatcgtgttggaatagacagaaggataatcgtgtgagagtagttcacatgatattctaaat 10926232  T
Q  113 gagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaa 167  Q
    || |||||||||| | || |||||||| | |||||||||||  ||||||||||||    
T  10926231 gaacaaatataagtcttcagatcaaaaaaaatcaacggttataatttggtgtcaa 10926177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 33435453 - 33435342
Alignment:
Q  89 agtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtc 188  Q
    ||||||||||||||||||||||||||  ||||||||||| |  ||| |||| | |||||| |||||||||||||||||||||||  ||| |||||||||     
T  33435453 agtggttcacatgatattctaaatgaataaatataagcctttagataaaaagaaatcaacagttaagatttggtgtcaacgaatccgttaacaccaggtg 33435354  T
Q  189 tcaacggatcct 200  Q
    ||||||||||||    
T  33435353 tcaacggatcct 33435342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 10927153 - 10927237
Alignment:
Q  83 tgtgtgagtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaa 167  Q
    |||| ||||||||||||||| ||| ||||||||||||||| |||| ||||||||||| | |||||| ||||||||||||||||||    
T  10927153 tgtgagagtggttcacatgagattttaaatgagcaaatattagccttcggatcaaaagaaatcaacagttaagatttggtgtcaa 10927237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 2512496 - 2512433
Alignment:
Q  144 tcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||||    
T  2512496 tcaacggttaatatttggtgtcaacgaattcgttgacatcaggtgtcaacggatcctgtctcat 2512433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 19323765 - 19323823
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| |||||||||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  19323765 ggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgtctcat 19323823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 13255143 - 13255009
Alignment:
Q  78 aatcgtgtgtgagtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtca-------acga 170  Q
    |||| |||| || ||||||| ||||| || |||||||||||||||||| | || |||||||| | |||||||||||| |||| ||||||       ||||    
T  13255143 aatcatgtgagaatggttcagatgattttttaaatgagcaaatataagtcttcagatcaaaagaaatcaacggttaaaatttagtgtcaacaaattacga 13255044  T
Q  171 atttgttgacaccaggtctcaacggatcctgtctc 205  Q
    ||| ||| ||||| ||| |||||||||||||||||    
T  13255043 attcgttaacacctggtgtcaacggatcctgtctc 13255009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 10171331 - 10171271
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||| |||||||||||||||||||  ||||||||| ||| ||||||||||||| |||||    
T  10171331 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 10171271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 21133222 - 21133276
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||||||||||||||||||||||||| ||| ||||  ||| ||||||||||||    
T  21133222 aacggttaagatttggtgtcaacgaattcgttaacacatggtgtcaacggatcct 21133276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 26529509 - 26529563
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||||| |||||||||||||||||||  ||||||||| ||| |||||||||||||    
T  26529509 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctg 26529563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 33436266 - 33436324
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    ||||||| ||||||||||||||||||||||  ||||||| | ||| |||||||||||||    
T  33436266 atcaacgattaagatttggtgtcaacgaatccgttgacatctggtgtcaacggatcctg 33436324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 10171962 - 10172015
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||| |||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  10171962 acggttgagatttggtgtcaacgaatgcgttgacacctggtgtcaacggatcct 10172015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 26528878 - 26528825
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||| |||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  26528878 acggttgagatttggtgtcaacgaatgcgttgacacctggtgtcaacggatcct 26528825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 20833383 - 20833316
Alignment:
Q  116 caaatataagccatcggatcaaaatatatcaacggttaaga-tttggtgtcaacgaatttgttgacac 182  Q
    |||||||||||| || |||||||  | |||||||||||| | ||||||||||||||||| ||||||||    
T  20833383 caaatataagccttcagatcaaacgaaatcaacggttaataatttggtgtcaacgaattcgttgacac 20833316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 3623231 - 3623177
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||| |||||||||||||| ||||| ||||||||| | | ||||||||||||    
T  3623231 aacggttgagatttggtgtcaaagaattcgttgacacctgatgtcaacggatcct 3623177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 8488525 - 8488471
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||| |||||||||||||||||||  ||||||||| ||| |||| |||||||    
T  8488525 aacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcct 8488471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 8489284 - 8489330
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||||||||| |||||||| ||||||||| ||| |||||||||||||    
T  8489284 gatttggtgttaacgaattcgttgacacctggtgtcaacggatcctg 8489330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 19311823 - 19311877
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||| |||||||||||||||||||||  ||||||||| ||| |||||| ||||||    
T  19311823 acggataagatttggtgtcaacgaatccgttgacacctggtgtcaacgaatcctg 19311877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 20833959 - 20834017
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    ||||||||| || |||||||||||||| ||| ||| ||||| ||| |||||||||||||    
T  20833959 atcaacggtcaatatttggtgtcaacggattcgttaacacctggtgtcaacggatcctg 20834017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 19654026 - 19653965
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||||||||||||||||||||| |   |||||||||||| ||||| |||| || |||||    
T  19654026 aacggttaagatttggtgtcaacgagtccattgacaccaggtgtcaacagatcttgactcat 19653965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 19311060 - 19310996
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||| ||| ||||||||||||||| |||  ||| ||||| ||| ||||||||||||| |||||    
T  19311060 atcaacagttgagatttggtgtcaacaaatccgttaacacctggtgtcaacggatcctgactcat 19310996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 25671964 - 25672075
Alignment:
Q  90 gtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtct 189  Q
    ||||||||||||||||| |||||||  ||||||||||| || ||| |||| | ||||||| ||||||||| |||||||||||| | |||||||  ||| |    
T  25671964 gtggttcacatgatattttaaatgaataaatataagccttcagatgaaaagaaatcaacgcttaagatttagtgtcaacgaatctattgacacttggtgt 25672063  T
Q  190 caacggatcctg 201  Q
    ||||||||||||    
T  25672064 caacggatcctg 25672075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 50271723 - 50271834
Alignment:
Q  90 gtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtct 189  Q
    ||||||||||| ||||||| |||||  ||||||||||| |  |||||||| | |||||| ||||||||||||||||||||||||  |||| ||| ||| |    
T  50271723 gtggttcacattatattcttaatgaataaatataagcctttagatcaaaagaaatcaacagttaagatttggtgtcaacgaattcattgatacctggtgt 50271822  T
Q  190 caacggatcctg 201  Q
    ||||||||||||    
T  50271823 caacggatcctg 50271834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 34309223 - 34309286
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctca 206  Q
    |||||||||| |||||||||||||||||||  ||||||||| ||| ||||||||||||||||||    
T  34309223 atcaacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctca 34309286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 25469079 - 25469137
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||| |||||||||||||    
T  25469079 atcaacggttaagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctg 25469137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 28181588 - 28181535
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||    
T  28181588 acggttgagatttggtgtcaacgaattcgttgacaccaggtgtcaacggatcct 28181535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 30663972 - 30664033
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||| |||||    
T  30663972 aacggttgagatttggtgtcaacgaatccgttgacaccaggtgtcaacggatcctgactcat 30664033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 27256705 - 27256769
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||| | |||||||||||||||||  ||||||||| ||| |||||||||||||||||||    
T  27256705 atcaacggttgaaatttggtgtcaacgaatacgttgacacctggtgtcaacggatcctgtctcat 27256769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 34308532 - 34308470
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctc 205  Q
    |||||||||| | |||||||||||||||||  ||||||||| ||| |||||||||||||||||    
T  34308532 atcaacggttgaaatttggtgtcaacgaatacgttgacacctggtgtcaacggatcctgtctc 34308470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 37852601 - 37852524
Alignment:
Q  124 agccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||||| |||| ||| || |||||||| |  |||||||||| |||||||| ||||||||||||| |||||||||||||    
T  37852601 agccattggattaaattaaatcaacggatgtgatttggtgttaacgaattcgttgacaccaggtgtcaacggatcctg 37852524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 13262886 - 13262835
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||| |||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  13262886 ggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcct 13262835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 40022276 - 40022169
Alignment:
Q  76 acaatcgtgtgtgagtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttg 175  Q
    ||||||||||  | ||||||||| || |||| ||||||| |||||| ||||  |  |||||||| | |||||||| ||| ||| |||||||||||||| |    
T  40022276 acaatcgtgtcagggtggttcacgtggtattttaaatgaacaaatacaagctcttagatcaaaagagatcaacgggtaacattaggtgtcaacgaattcg 40022177  T
Q  176 ttgacacc 183  Q
    ||||||||    
T  40022176 ttgacacc 40022169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 4439210 - 4439256
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||||||||||||||||  ||||||||||||| ||||||||||||    
T  4439210 agatttggtgtcaacgaatccgttgacaccaggtgtcaacggatcct 4439256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 7406298 - 7406240
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| |||||||||||||||||||| ||| ||||| ||| ||||||||||||| |||||    
T  7406298 ggttgagatttggtgtcaacgaattcgttaacacctggtgtcaacggatcctgactcat 7406240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 7559203 - 7559256
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||||||||| ||  ||||||||| ||| |||||||||||||||||||    
T  7559203 agatttggtgtcaacggatccgttgacacctggtgtcaacggatcctgtctcat 7559256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 17171977 - 17171928
Alignment:
Q  156 atttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctc 205  Q
    |||||||||||||||||| ||||||||| ||| |||||||||||| ||||    
T  17171977 atttggtgtcaacgaattcgttgacacctggtgtcaacggatcctatctc 17171928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 32038532 - 32038479
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||| |||||||||||||||||||| ||||||||| ||| ||||| ||||||    
T  32038532 acggttgagatttggtgtcaacgaattcgttgacacctggtatcaaccgatcct 32038479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 30663414 - 30663350
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcatttt 210  Q
    ||||||| |||||||||||||||||||  ||||| ||| ||| ||||||||||||| ||| ||||    
T  30663414 aacggttgagatttggtgtcaacgaatccgttgatacctggtgtcaacggatcctgactcttttt 30663350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 4135543 - 4135594
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||||||||||||||||||||| |||||||||| | |  |||||||||||    
T  4135543 ggttaagatttggtgtcaacgaatatgttgacacctgatgccaacggatcct 4135594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 11548848 - 11548801
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||||| |||||||||||| |||||||||| ||| |||||||||||||    
T  11548848 agatttagtgtcaacgaatctgttgacacctggtgtcaacggatcctg 11548801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 46391872 - 46391923
Alignment:
Q  156 atttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||| |||||||||||  ||||||||| ||| |||||||||||||||||||    
T  46391872 atttgatgtcaacgaatccgttgacacctggtgtcaacggatcctgtctcat 46391923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 4433851 - 4433897
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  4433851 agatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 4433897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 13263513 - 13263567
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||||| |||||||||||||||||||   |||||||| ||| |||||||||||||    
T  13263513 acggttgagatttggtgtcaacgaatccattgacacctggtgtcaacggatcctg 13263567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 25671229 - 25671171
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    ||||| ||||| |||||||||| |||||||  ||| ||||||||| |||||||||||||    
T  25671229 atcaatggttaggatttggtgttaacgaatccgttaacaccaggtgtcaacggatcctg 25671171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 49680859 - 49680813
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  49680859 agatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 49680813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 12760823 - 12760778
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||| ||| |||||||| ||||||||||||| ||||||||||||    
T  12760823 gatttgatgttaacgaattcgttgacaccaggtgtcaacggatcct 12760778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 24992026 - 24991965
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| ||| ||||||||||||||||||  ||||||||| ||| |||| ||||||| ||||||    
T  24992026 aacgtttatgatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctatctcat 24991965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 28182069 - 28182122
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||||||||||||||||| ||||  ||||||||| ||| ||||| ||||||    
T  28182069 acggttaagatttggtgtcaaagaatccgttgacacctggtgtcaacagatcct 28182122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 36390372 - 36390417
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||||||||||| ||| ||||||||| ||| ||||||||||||    
T  36390372 gatttggtgtcaacggattcgttgacacctggtgtcaacggatcct 36390417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 10120830 - 10120774
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcattttt 211  Q
    |||||||||||||| |||  ||||||||| ||| ||||||||||||  |||||||||    
T  10120830 gatttggtgtcaaccaatccgttgacacctggtgtcaacggatcctaactcattttt 10120774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 10121550 - 10121602
Alignment:
Q  148 cggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||| ||||||||||||||| |||  ||||||||| ||| ||||||||||||    
T  10121550 cggttgagatttggtgtcaaccaatccgttgacacctggtgtcaacggatcct 10121602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 17172667 - 17172719
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||| ||||||||||  ||||||||| ||| |||||||||||| ||||||    
T  17172667 gatttggcgtcaacgaatccgttgacacctggtgtcaacggatcctatctcat 17172719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 19172580 - 19172632
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||||||||||||||  ||||||||| ||| |||| |||||||| |||||    
T  19172580 gatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctgactcat 19172632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 25468565 - 25468505
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||| |||||||||||||| ||||  ||||||||| ||| |||| |||||||| |||||    
T  25468565 acggttgagatttggtgtcaatgaatccgttgacacctggtgtcaatggatcctgactcat 25468505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 47969351 - 47969383
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggt 187  Q
    ||||||| |||||||||||||||||||||||||    
T  47969351 gatttggcgtcaacgaatttgttgacaccaggt 47969383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 49681672 - 49681728
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctc 205  Q
    |||| |||||||||||||||| ||| ||||| | | ||| |||||||||||||||||    
T  49681672 ggttgagatttggtgtcaacggattcgttgatatctggtgtcaacggatcctgtctc 49681728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 22799699 - 22799806
Alignment:
Q  90 gtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtct 189  Q
    ||||||||||| ||||||| |||||  ||||||||| | |  |||||||| | |||||| ||||||||||||||||||||||||  |||||||| ||| |    
T  22799699 gtggttcacattatattcttaatgaataaatataagtctttagatcaaaagaaatcaacagttaagatttggtgtcaacgaattcattgacacctggtgt 22799798  T
Q  190 caacggat 197  Q
    ||||||||    
T  22799799 caacggat 22799806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 19360468 - 19360532
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||||| |||||    
T  19360468 atcaacggttaatatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgactcat 19360532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 19128826 - 19128765
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||||||||||||||||||||  ||||||||| ||| ||||||||||||| |||||    
T  19128826 aacggttaagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 19128765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 41045496 - 41045415
Alignment:
Q  90 gtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaa 171  Q
    ||||||||||| ||||||| |||||  ||||||||||| |  |||||||| | |||||| ||||||||||||||||||||||    
T  41045496 gtggttcacattatattcttaatgaataaatataagcctttagatcaaaagaaatcaacagttaagatttggtgtcaacgaa 41045415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 237813 - 237877
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||||| |||||||||||||||||  ||||||||| ||| ||||||||||||| |||||    
T  237813 atcaacggttaatatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 237877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 1554081 - 1554137
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctc 205  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||    
T  1554081 ggttaagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctatctc 1554137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 4084933 - 4084881
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||| |||||||||||||||||||| ||||||||||||| |||||||||||||    
T  4084933 ggttgagatttggtgtcaacgaattcgttgacaccaggtgtcaacggatcctg 4084881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 19359763 - 19359699
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||||| |||||||||||||||||  ||||||||| ||| ||||||||||||| |||||    
T  19359763 atcaacggttaatatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 19359699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 31082683 - 31082775
Alignment:
Q  90 gtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacac 182  Q
    ||||||||||| ||||||| |||||  ||||||||||| |  |||||||| | |||||  ||||||||||||||||||||||||  |||||||    
T  31082683 gtggttcacattatattcttaatgaataaatataagcccttagatcaaaagaaatcaatagttaagatttggtgtcaacgaattcattgacac 31082775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 7632165 - 7632090
Alignment:
Q  132 gatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||| || || || |||||||||||||||||||||  ||||||||| ||| |||||||||||| ||||||    
T  7632165 gatcaaaataaataaatggataagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctatctcat 7632090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 234760 - 234702
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||||||||||| |||||||||||||||||  ||||||||| ||| |||||||||||||    
T  234760 atcaacggttaatatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctg 234702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 19366505 - 19366615
Alignment:
Q  90 gtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtct 189  Q
    ||||||||||| ||||||| |||||  ||| ||||||| |  |||||||| | |||| | ||||||||||  ||||||||||||  |||||||| ||| |    
T  19366505 gtggttcacattatattcttaatgaataaacataagcctttagatcaaaagaaatcagcagttaagatttaatgtcaacgaattcattgacacctggtgt 19366604  T
Q  190 caacggatcct 200  Q
    |||||||||||    
T  19366605 caacggatcct 19366615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 71 - 200
Target Start/End: Original strand, 29088538 - 29088667
Alignment:
Q  71 gaaggacaatcgtgtgtgagtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacga 170  Q
    |||||| |||| |||| |||  |||||| || |||| ||||||| |||| ||||||  |  |||||||| | |||||||||||| |||  ||||||||||    
T  29088538 gaaggataatcatgtgagagcagttcacttggtattttaaatgaacaaacataagctcttagatcaaaagagatcaacggttaacattaagtgtcaacga 29088637  T
Q  171 atttgttgacaccaggtctcaacggatcct 200  Q
    ||| | ||||| ||||| ||||||||||||    
T  29088638 attcgctgacatcaggtgtcaacggatcct 29088667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 6476789 - 6476845
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctc 205  Q
    |||| |||||||||||||||||||  ||||||||| ||| |||||||||||||||||    
T  6476789 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctc 6476845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 17071280 - 17071226
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||| |||||||||||||||||||| ||||||||| | | ||||||||||||    
T  17071280 aacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatcct 17071226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 27364485 - 27364543
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| |||||||||||||||||||   |||||||| ||| |||||||||||||||||||    
T  27364485 ggttgagatttggtgtcaacgaatccattgacacctggtgtcaacggatcctgtctcat 27364543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 34600317 - 34600263
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||| |||||||||||||||||||| ||||||||| | | ||||||||||||    
T  34600317 aacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatcct 34600263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 1281892 - 1281831
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| ||||||||||||||||||||||  ||||||||| ||| |||| ||||||| ||||||    
T  1281892 aacgtttaagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctatctcat 1281831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 13306273 - 13306330
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcatttttt 212  Q
    |||||| |||||||||||| ||||||| ||||| ||||||||||||| ||| ||||||    
T  13306273 gatttgatgtcaacgaattcgttgacatcaggtgtcaacggatcctgactcttttttt 13306330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 10554565 - 10554517
Alignment:
Q  159 tggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||||||||||  ||||||||| ||| |||||||||||||||||||    
T  10554565 tggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctcat 10554517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 28705875 - 28705935
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||| |||||| ||||||||||||  ||||||||| ||| ||||||||||||| |||||    
T  28705875 acggttgagatttagtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 28705935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 1283485 - 1283548
Alignment:
Q  136 aaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcc 199  Q
    |||||| || |||| ||||||||||||||||||||||  ||||||||| ||| |||||| ||||    
T  1283485 aaaataaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgtcaacgaatcc 1283548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 29046077 - 29046030
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||||||||||||||||||  ||||||||| ||| |||||||||||||    
T  29046077 agatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctg 29046030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 31036082 - 31036153
Alignment:
Q  89 agtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttg 160  Q
    |||||||||||| ||||||||||| | |||||||||||| |   ||||||| | ||||||| ||||||||||    
T  31036082 agtggttcacatcatattctaaatcaacaaatataagcctttatatcaaaagaaatcaacgattaagatttg 31036153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 33005580 - 33005525
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatc 198  Q
    ||||||||||||||||| |||||||||||||  |||||||  ||| ||||||||||    
T  33005580 atcaacggttaagattttgtgtcaacgaattcattgacacttggtgtcaacggatc 33005525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 2314003 - 2313949
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||| ||||||||||||||||| |||| |||||||||| ||| |||| |||||||    
T  2314003 aacgtttaagatttggtgtcaatgaatctgttgacacctggtgtcaatggatcct 2313949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 17071789 - 17071843
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||||  ||||||||||||||||||| ||| ||||| ||| ||||||||||||    
T  17071789 aacggttgcgatttggtgtcaacgaattcgttaacacctggtgtcaacggatcct 17071843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 207
Target Start/End: Original strand, 235421 - 235534
Alignment:
Q  95 tcacatgata-ttctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaac 193  Q
    |||||||||| || ||| ||| ||||| ||| ||||  |||||||  | |||||||||||| ||||| |||||||||||  ||| ||| | ||| |||||    
T  235421 tcacatgatacttttaattgaacaaatgtaaaccattagatcaaacgaaatcaacggttaatatttgatgtcaacgaatccgttaacatccggtgtcaac 235520  T
Q  194 ggatcctgtctcat 207  Q
    |||||||| |||||    
T  235521 ggatcctgactcat 235534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 235647 - 235594
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||| |||||||||||||||||||  ||||||||| ||| |||| |||||||    
T  235647 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcct 235594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 237151 - 237038
Alignment:
Q  95 tcacatgata-ttctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaac 193  Q
    |||||||||| || ||| ||| ||||| ||| ||||  |||||||  | |||||||||||| ||||| |||||||||||  ||| ||| | ||| |||||    
T  237151 tcacatgatacttttaattgaacaaatgtaaaccattagatcaaacgaaatcaacggttaatatttgatgtcaacgaatccgttaacatccggtgtcaac 237052  T
Q  194 ggatcctgtctcat 207  Q
    |||||||| |||||    
T  237051 ggatcctgactcat 237038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 6476096 - 6476064
Alignment:
Q  175 gttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||||||||| |||||||||||||||||||    
T  6476096 gttgacaccaggtgtcaacggatcctgtctcat 6476064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 22798957 - 22798905
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatc 198  Q
    |||| ||||||||||||||||||||||  ||||||||| | | ||||||||||    
T  22798957 aacgattaagatttggtgtcaacgaatccgttgacacctgatatcaacggatc 22798905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 43510278 - 43510234
Alignment:
Q  156 atttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||||| ||||||| |||||||||| ||| ||||||||||||    
T  43510278 atttggtgttaacgaatctgttgacacctggtgtcaacggatcct 43510234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 90 - 184
Target Start/End: Original strand, 31954233 - 31954327
Alignment:
Q  90 gtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacacca 184  Q
    ||||||||||||||||||||||| | ||||| |||||| |   || |||| | ||||||||||||||||||||||||||||||  ||||||||||    
T  31954233 gtggttcacatgatattctaaatcaacaaatgtaagcctttaaataaaaagaaatcaacggttaagatttggtgtcaacgaatccgttgacacca 31954327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 30661448 - 30661512
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||| |||||||||||||||||||  ||||||||| ||| |||||||||||||||||||    
T  30661448 atcaacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctcat 30661512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 1417661 - 1417602
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcatt 208  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||||||||||| |||||||    
T  1417661 ggttaagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctatctcatt 1417602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 37949664 - 37949602
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctc 205  Q
    |||||||||| |||||||||||||||||||  ||||||||| ||| |||||||||||||||||    
T  37949664 atcaacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctc 37949602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 13785589 - 13785650
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| ||||||||||||||||||||||  ||||||||| ||| |||||||||||||||||||    
T  13785589 aacgcttaagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctcat 13785650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 25599081 - 25599012
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcatttttt 212  Q
    ||||||| || |||||||||||||||||||  ||||||||| ||| ||||||||||||| ||||||||||    
T  25599081 atcaacgattgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcatttttt 25599012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 19068388 - 19068452
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||| | |||||||||||||||||  ||||||||| ||| |||||||||||||||||||    
T  19068388 atcaacggttgaaatttggtgtcaacgaatacgttgacacctggtgtcaacggatcctgtctcat 19068452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 38225974 - 38226030
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctc 205  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||    
T  38225974 ggttaagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctatctc 38226030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 3689276 - 3689326
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctc 205  Q
    |||||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  3689276 gatttggtgtcaacgaatctgttgacatcaggtgtcaacggatcctgtctc 3689326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 45099890 - 45099950
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||| |||||||||||||||||  ||||||||| ||| ||||||||||||| |||||    
T  45099890 acggttaaaatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 45099950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 19067696 - 19067637
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgt 202  Q
    |||||||||| |||||||||||||||||||  ||||||||  ||| ||||||||||||||    
T  19067696 atcaacggttgagatttggtgtcaacgaatccgttgacacgtggtgtcaacggatcctgt 19067637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 21496979 - 21497034
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    ||||||| |||||||||||||||||||| ||||||||| | | |||||||||||||    
T  21496979 aacggttgagatttggtgtcaacgaattcgttgacacctgttgtcaacggatcctg 21497034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 27948499 - 27948448
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||| |||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  27948499 ggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcct 27948448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 36378898 - 36378807
Alignment:
Q  116 caaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||| |||| | ||||||||  | |||||||| ||| |||||||||||||||||  || |||||||||| ||||| ||||||| |||||    
T  36378898 caaatattagcctttggatcaaataaaatcaacggataaaatttggtgtcaacgaatccgtcgacaccaggtgtcaacagatcctgactcat 36378807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 26636158 - 26636104
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||||| |||||||||||||||||||  ||||||||| ||| |||||||||||||    
T  26636158 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctg 26636104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 40273616 - 40273562
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||| ||||||||||||||||||||  |||||||| ||| ||||||||||||    
T  40273616 aacggttgagatttggtgtcaacgaattcattgacacctggtgtcaacggatcct 40273562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 46428240 - 46428182
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| |||||||||||||||||||  ||||||||| ||| ||||||||||||| |||||    
T  46428240 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 46428182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 3029203 - 3029248
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  3029203 gatttggtgtcaacgaattcgttgacacctggtgtcaacggatcct 3029248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 3772523 - 3772576
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||| |||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  3772523 acggttgagatttggtgtcaacgaatacgttgacacctggtgtcaacggatcct 3772576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 47719700 - 47719761
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| ||||||||||||||||||||||  ||||||||| ||| |||| ||||||| ||||||    
T  47719700 aacgtttaagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctatctcat 47719761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 7668535 - 7668483
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||| |||||||||||||||||||  ||||||||| ||| |||||||||||||    
T  7668535 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctg 7668483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 23889799 - 23889863
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||| | ||| |||||||||||||||||| |||||||||||||  ||||||||| || |||||    
T  23889799 atcaacagataaaatttggtgtcaacgaattcgttgacaccaggtgccaacggatcttgactcat 23889863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 23901095 - 23901151
Alignment:
Q  151 ttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||||| ||||||||||||| ||||||||| ||| |||| ||||||| ||||||    
T  23901095 ttaagatttagtgtcaacgaattcgttgacacctggtgtcaatggatcctatctcat 23901151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 25343238 - 25343290
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||| ||||||||||||||||||||  |||||||| ||| |||||||||||||    
T  25343238 ggttgagatttggtgtcaacgaattcattgacacctggtgtcaacggatcctg 25343290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 3688434 - 3688379
Alignment:
Q  152 taagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||||||||||||||  ||||| | | ||| |||||||||||||||||||    
T  3688434 taagatttggtgtcaacgaatccgttgatatctggtgtcaacggatcctgtctcat 3688379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 25342550 - 25342499
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||| |||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  25342550 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 25342499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 25343356 - 25343305
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||| |||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  25343356 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 25343305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 31954369 - 31954302
Alignment:
Q  117 aaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacacca 184  Q
    |||||| |||| | ||||||||  | ||||||| ||||||||||||||||||| ||| ||||||||||    
T  31954369 aaatattagcctttggatcaaatgaaatcaacgattaagatttggtgtcaacggattcgttgacacca 31954302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 31955157 - 31955267
Alignment:
Q  90 gtggttcacatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtct 189  Q
    ||||||||||| ||||||| |||||  ||||||||||  |  |||||||| | |||||| ||||||||||  |||||||||||   ||||||||  || |    
T  31955157 gtggttcacattatattcttaatgaataaatataagcttttagatcaaaagaaatcaacagttaagatttaatgtcaacgaatcaattgacacc-tgtgt 31955255  T
Q  190 caacggatcctg 201  Q
    ||||||||||||    
T  31955256 caacggatcctg 31955267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 46428821 - 46428868
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    ||||||| |||||||||||| ||||||||| ||| |||||||||||||    
T  46428821 agatttgatgtcaacgaattcgttgacacctggtgtcaacggatcctg 46428868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 26636857 - 26636911
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||||| |||||||||||||||||||  |||||||||  || |||||||||||||    
T  26636857 acggttgagatttggtgtcaacgaatccgttgacaccttgtgtcaacggatcctg 26636911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 30660641 - 30660595
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  30660641 agatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 30660595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 37950471 - 37950517
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  37950471 agatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 37950517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 43065098 - 43065164
Alignment:
Q  132 gatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatc 198  Q
    |||||||||| || || ||  ||||||||||||||||||||  ||||||||| ||| ||||||||||    
T  43065098 gatcaaaataaataaagggacaagatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 43065164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 14305146 - 14305085
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| ||||||||||||||||| ||||  |||||||||  || |||||||||||| ||||||    
T  14305146 aacgtttaagatttggtgtcaatgaatccgttgacacctagtgtcaacggatcctatctcat 14305085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 25599823 - 25599876
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||||||| |||| | |||||||| ||| ||||||||||||| |||||    
T  25599823 agatttggtgtcaatgaatctattgacacctggtgtcaacggatcctgactcat 25599876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 3028029 - 3027993
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacacc 183  Q
    |||||| |||||||||||||||||||| |||||||||    
T  3028029 acggttgagatttggtgtcaacgaattcgttgacacc 3027993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 22063 - 22125
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctc 205  Q
    |||||||||||| |||||||||||||||||  ||||||||| ||| |||||||||||||||||    
T  22063 atcaacggttaaaatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctc 22125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 15078 - 15019
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctca 206  Q
    |||||| |||||||||||||| ||||  |||||||| |||| ||||||||||||| ||||    
T  15078 acggttgagatttggtgtcaatgaatccgttgacactaggtgtcaacggatcctgactca 15019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 15137 - 15083
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||||| |||||||||||||| ||||  |||||||| |||| |||||||||||||    
T  15137 acggttgagatttggtgtcaatgaatccgttgacactaggtgtcaacggatcctg 15083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 21537 - 21501
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacacc 183  Q
    |||||| |||||||||||||||||||| |||||||||    
T  21537 acggttgagatttggtgtcaacgaattcgttgacacc 21501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 17724813 - 17724761
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  17724813 gatttggtgtcaacgaatctgttgacaccaggtgtcaactgatcctgtctcat 17724761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 3043296 - 3043245
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||| ||||||||||||| ||||||||||||||||||| ||||||||||||    
T  3043296 ggttaggatttggtgtcaatgaatttgttgacaccaggtgtcaacggatcct 3043245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 8372973 - 8372915
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    ||||||| |||| |||||||||||||||||  ||||||||||||| |||||||||||||    
T  8372973 atcaacgattaatatttggtgtcaacgaatccgttgacaccaggtgtcaacggatcctg 8372915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 27441520 - 27441462
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||||| |||||||||||| ||||||||| ||| |||||||||||| ||||||    
T  27441520 ggttaagatttgatgtcaacgaattcgttgacacctggtgtcaacggatcctatctcat 27441462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 11686960 - 11687013
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||| |||||| ||||||||||||| ||||||||||||| ||||||||||||    
T  11686960 acggttgagatttagtgtcaacgaattcgttgacaccaggtgtcaacggatcct 11687013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 531422 - 531494
Alignment:
Q  97 acatgatattctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacg 169  Q
    |||||||||| |||||||  ||||||||||| | ||||||||| | ||| ||| |||||||||||||||||||    
T  531422 acatgatattttaaatgaataaatataagcctttggatcaaaagaaatccacgattaagatttggtgtcaacg 531494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 39860169 - 39860106
Alignment:
Q  146 aacggttaagatttggtgtcaacgaat--ttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| ||||||||||||||||||||||  ||||||||||| ||| ||||||||||||| |||||    
T  39860169 aacgcttaagatttggtgtcaacgaatccttgttgacacctggtgtcaacggatcctgcctcat 39860106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 37732883 - 37732828
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||| ||||| ||||||||||||||||  ||||||||||||| |||||||||||||    
T  37732883 aacgcttaagttttggtgtcaacgaatccgttgacaccaggtgtcaacggatcctg 37732828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 3043960 - 3044014
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    ||||||||| |||||||||||||||||| ||||||||| ||| || |||||||||    
T  3043960 aacggttaacatttggtgtcaacgaattcgttgacacctggtgtcgacggatcct 3044014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 3417411 - 3417353
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||||||||||||||||||||| ||| ||||||| | ||||| ||||||| |||||    
T  3417411 ggttaagatttggtgtcaacgaattcgttaacaccagatgtcaacagatcctgactcat 3417353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 8373685 - 8373743
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    |||||||||||| |||||||||||||||||  ||||||||  ||| |||||||||||||    
T  8373685 atcaacggttaatatttggtgtcaacgaatccgttgacacttggtgtcaacggatcctg 8373743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 9197816 - 9197870
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    ||||||| ||||||||||||||||||| ||||||||  ||| |||||||||||||    
T  9197816 acggttaggatttggtgtcaacgaattcgttgacacttggtgtcaacggatcctg 9197870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 17725658 - 17725708
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctc 205  Q
    ||||||||||||||||||| ||||||||| | | |||||||||||||||||    
T  17725658 gatttggtgtcaacgaattcgttgacacctgctgtcaacggatcctgtctc 17725708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 31641571 - 31641513
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    ||||||||||||||||||||||||||||||   |||||||| ||| |||| ||||||||    
T  31641571 atcaacggttaagatttggtgtcaacgaatccattgacacctggtgtcaatggatcctg 31641513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 9197152 - 9197091
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||| || ||||||||||||||||||| ||||||||| ||| ||||||||| ||| |||||    
T  9197152 aacggataggatttggtgtcaacgaattcgttgacacctggtgtcaacggattctgactcat 9197091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 26652341 - 26652288
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcatt 208  Q
    |||||||||| |||||||| ||||||||| ||| ||||||||||||| ||||||    
T  26652341 gatttggtgttaacgaattcgttgacacctggtgtcaacggatcctgactcatt 26652288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 31602072 - 31602019
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||||| |||||||||||||||||||| ||||||||| ||| ||||| ||||||    
T  31602072 acggttgagatttggtgtcaacgaattcgttgacacctggtgtcaaccgatcct 31602019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 32414519 - 32414580
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| ||||||||||||||||||||||  ||||||||| ||| ||||| |||||| ||||||    
T  32414519 aacgcttaagatttggtgtcaacgaatccgttgacacctggtgtcaacagatcctttctcat 32414580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 41974689 - 41974636
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||| |||||    
T  41974689 agatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 41974636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 31642083 - 31642143
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||| |||||||||||||||||||| ||||||| | ||| |||| |||||||| |||||    
T  31642083 acggttgagatttggtgtcaacgaattcgttgacatctggtgtcaatggatcctgactcat 31642143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 15198289 - 15198340
Alignment:
Q  150 gttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    ||||| ||||||||||||| |||| ||||||||||||| |||| ||||||||    
T  15198289 gttaaaatttggtgtcaacaaattcgttgacaccaggtgtcaaaggatcctg 15198340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 26654374 - 26654425
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatc 198  Q
    ||||||||||||||||||||||||||   |||||||| ||| ||||||||||    
T  26654374 acggttaagatttggtgtcaacgaatccattgacacctggtgtcaacggatc 26654425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 38576300 - 38576351
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcct 200  Q
    |||| |||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  38576300 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 38576351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 8996972 - 8997030
Alignment:
Q  149 ggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||| ||||||||||||||| |||  ||||||||| ||| ||||||||||||| |||||    
T  8996972 ggttgagatttggtgtcaacaaatcagttgacacctggtatcaacggatcctgactcat 8997030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 22320426 - 22320376
Alignment:
Q  151 ttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    ||||||||||||||||||||||  ||||||||| ||  |||||||||||||    
T  22320426 ttaagatttggtgtcaacgaatccgttgacacctggcatcaacggatcctg 22320376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 3165125 - 3165178
Alignment:
Q  154 agatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||||||||||||  ||||||||| | | ||||||||||||| |||||    
T  3165125 agatttggtgtcaacgaatccgttgacacctgatgtcaacggatcctgactcat 3165178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 45916 - 45972
Alignment:
Q  147 acggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtc 203  Q
    |||||| | ||||||||||||||||||  |||||||| |||  ||||||||||||||    
T  45916 acggttgatatttggtgtcaacgaattcattgacacctggtgccaacggatcctgtc 45972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 27442145 - 27442197
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||||||| |||| ||| ||||||||| ||| ||||||||||||| |||||    
T  27442145 gatttggtgttaacggattcgttgacacctggtgtcaacggatcctgactcat 27442197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 34478908 - 34478872
Alignment:
Q  146 aacggttaagatttggtgtcaacgaatttgttgacac 182  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  34478908 aacggttgagatttagtgtcaacgaatttgttgacac 34478872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 6891 - 6941
Alignment:
Q  157 tttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  6891 tttggtgtcaacgaatttgttgacacctggtgtcaacggatcctgactcat 6941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 40004 - 39891
Alignment:
Q  95 tcacatgata-ttctaaatgagcaaatataagccatcggatcaaaatatatcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaac 193  Q
    |||||||||| || ||| ||| ||||| ||| ||||  |||||||  | ||||||| |||| |||||||||||||||||  ||||||||| ||| |||||    
T  40004 tcacatgatacttttaattgaacaaatgtaaaccattagatcaaacgaaatcaacgattaatatttggtgtcaacgaatccgttgacacctggtgtcaac 39905  T
Q  194 ggatcctgtctcat 207  Q
    |||| ||| |||||    
T  39904 ggattctgactcat 39891  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 428899 - 428952
Alignment:
Q  148 cggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctg 201  Q
    ||||| |||||||||||||||||||| ||||| ||| ||| |||||||||||||    
T  428899 cggttgagatttggtgtcaacgaattcgttgataccgggtgtcaacggatcctg 428952  T

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Target: scaffold0176 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 26639 - 26587
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    ||||||||||||||||||  ||||||||| ||| ||||||||||||| |||||    
T  26639 gatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 26587  T

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Target: scaffold1207 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 1634 - 1587
Alignment:
Q  155 gatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgt 202  Q
    ||||||||||||||||||| ||||||||| ||| ||||| ||||||||    
T  1634 gatttggtgtcaacgaattcgttgacacctggtgtcaaccgatcctgt 1587  T

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Target: scaffold0504 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 5372 - 5436
Alignment:
Q  143 atcaacggttaagatttggtgtcaacgaatttgttgacaccaggtctcaacggatcctgtctcat 207  Q
    |||||| | ||| ||||||||||||| |||  ||||||||| ||| ||||||||||||| |||||    
T  5372 atcaacagataaaatttggtgtcaacaaatccgttgacacctggtgtcaacggatcctgactcat 5436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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