View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18243_low_80 (Length: 326)

Name: NF18243_low_80
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18243_low_80
NF18243_low_80
[»] chr5 (1 HSPs)
chr5 (19-314)||(2386556-2386851)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 2386851 - 2386556
Alignment:
Q  19 acaattcctgctaatacaattagtaaaatcaaagggttgcaaaaattgagccttagatccaacaatatcataggtccattgccagattttgctgtttgga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386851 acaattcctgctaatacaattagtaaaatcaaagggttgcaaaaattgagccttagatccaacaatatcataggtccattgccagattttgctgtttgga 2386752  T
Q  119 agaatttatctgttgttaatttgtctaataaccgtttcattggtgaaattcctttatctctttccaatttgagtcaccttgtttatttgaatctcgcaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386751 agaatttatctgttgttaatttgtctaataaccgtttcattggtgaaattcctttatctctttccaatttgagtcaccttgtttatttgaatctcgcaaa 2386652  T
Q  219 caactcgctttccggtgaaattcctgatataagcttgccattgttgaaacaattgaatttggctaacaacaatttgcaaggggttgttcctgtttc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2386651 caactcgctttccggtgaaattcctgatataagcttgccattgttgaaacagttgaatttggctaacaacaatttgcaaggggttgttcctgtttc 2386556  T

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