View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_81 (Length: 323)
Name: NF18243_low_81
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_81 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 107 - 323
Target Start/End: Original strand, 30891698 - 30891914
Alignment:
| Q |
107 |
tcggtagttcatagattgagacttagttgatcgtagagaaatgaaaagtacaatttattcttagtcacttctaggaatttttaaggatattagtctgtat |
206 |
Q |
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| T |
30891698 |
tcggtagttcatagattgagacctagttgatcgtagagaaatgaaaagtacgattcattcttagtcacttctaggaatttttaaggatattagtctgtat |
30891797 |
T |
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| Q |
207 |
gcaagactattttaagcgacattaaattttttaagatcaaattgatacttttaatttctcagaattcaaactagtctatatctcttgacggagaacttta |
306 |
Q |
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| T |
30891798 |
gcaagactattttaagcgacatgaaattttttaagatcaaattgatacttttcatttctcagaattcaaactagtctatatctcttgacggagaacttta |
30891897 |
T |
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| Q |
307 |
ccaccctctgtgctcct |
323 |
Q |
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| T |
30891898 |
ccaccctctgtggtcct |
30891914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 30891578 - 30891684
Alignment:
| Q |
17 |
agttaaaatattcaatcacttacattttctcaaattactgacaatgaccacatgttagtgtcattgtcgtgtttggaatccgtatcattgtcggtagttc |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
30891578 |
agttaaaatattcaatcgcttacattttctcaaattactgacaatgaccacatgttagtgtcattgtcgtctttgtaatccgtatcattgtcggtagttc |
30891677 |
T |
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| Q |
117 |
atagatt |
123 |
Q |
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| T |
30891678 |
atagatt |
30891684 |
T |
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