View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_84 (Length: 297)
Name: NF18243_low_84
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_84 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 42903521 - 42903792
Alignment:
| Q |
17 |
aatattaagggagtaagcagcagacataagcaattgtggtggtccctttgaagcccttagaggcattgctgccacatacacttcctctctgcctcttacc |
116 |
Q |
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| T |
42903521 |
aatattaagggagtaagcagcagacataagcaattgtggtggtccctttgaagcccttagaggcattgctgccacatacacttcctctctgcctcttacc |
42903620 |
T |
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| Q |
117 |
attcttcttgtctttgatacaagtgattccatttctatgtcactcaacaaacaaactatatttatccattcctacttttgtaagagaaactaacggttca |
216 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42903621 |
attcttcttgtctttgatacaagtgattccatttttatgtcactcaacaaacaaactatatttatccattcctacttttgtaagagaaactaatggttca |
42903720 |
T |
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| Q |
217 |
aatttatccaatacatttggt-cccacttgctttacattttattatgactttacacttttttcctcaatatt |
287 |
Q |
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| T |
42903721 |
aatttatccaatacatttggtccccacttgctttacattttattatgactttacacttttttcctcaatatt |
42903792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 56 - 287
Target Start/End: Original strand, 42908538 - 42908775
Alignment:
| Q |
56 |
tggtccctttgaagcccttagaggcattgctgccacatacacttcctctctgcctctt-----accattcttcttgtctttgatacaagtgattccattt |
150 |
Q |
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| T |
42908538 |
tggtccctttgaagcccttagaggcattgctgccacatacacttcctctctgcctcttatcttaccattcttcttgtctttgatacaagtgattccattt |
42908637 |
T |
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| Q |
151 |
ctatgtcactcaacaaacaaactatatttatccattcctacttttgtaagagaaactaacggttcaaatttatccaatacatttggt-cccacttgcttt |
249 |
Q |
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| T |
42908638 |
ctatgtcactcaacaaacaaactatatttatccattcctacttttgtaagagaaactaatggttcaaatttatccaatacatttggtccccacttgcttt |
42908737 |
T |
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| Q |
250 |
acattttattatgactttacacttttttcctcaatatt |
287 |
Q |
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| T |
42908738 |
acattttattatgactttacacttttttcctcaatatt |
42908775 |
T |
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