View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_85 (Length: 295)
Name: NF18243_low_85
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_85 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 39210454 - 39210722
Alignment:
| Q |
14 |
ttctgcccttttacttcccactaccttc---tataacacaattgttaaggagttaaccgcttctgacgttacttttggaatgttggtgagttgtatgatt |
110 |
Q |
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| T |
39210454 |
ttctgcccttttacttcccactaccttcttctataacacaattgttaaggagttaaccgcttctgacgttacttttggaatgttggtgagttgtatgatt |
39210553 |
T |
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| Q |
111 |
gtctatatgcagaatttgaattggcttgacttttgtcaatctgcatttcgggctgagaaaattgaattaactgtcattgattgcctgggaatacttgaaa |
210 |
Q |
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| T |
39210554 |
gtctatatgcagaatttgaattggcttgacttttgtcaatctgcatttcaggctgagaaaattgaattaactgtcattgattgcctggaaatacttggaa |
39210653 |
T |
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| Q |
211 |
gttgttaacggatttttgtcatgatgaacagttgtcatgtgttttttctggtgaatggcaagcattgtg |
279 |
Q |
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| T |
39210654 |
gttgtttacggatttttgtcatgatgaacggttgtcatgtgttttttctggtgaatggcaagcattgtg |
39210722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 109 - 279
Target Start/End: Complemental strand, 27510379 - 27510211
Alignment:
| Q |
109 |
ttgtctatatgcagaatttgaattggcttgacttttgtcaatctgcatttcgggctgagaaaattgaattaactgtcattgattgcctggg-aatacttg |
207 |
Q |
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| T |
27510379 |
ttgtctatatgcagaatttgaattggcttggcttttgtcaatctgcatttcgggctgggaaaactgaatcaactgtcattgattgcctgggctatacttg |
27510280 |
T |
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| Q |
208 |
aaagttgttaacggatttttgtcatgatgaacagttgtcatgtgttttttctggtgaatggcaagcattgtg |
279 |
Q |
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| T |
27510279 |
gaagttgtttacggatttttgtc---atgaacagttgtcatgtgttttttctggtgaatggcaagcattgtg |
27510211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 109 - 279
Target Start/End: Original strand, 27271016 - 27271187
Alignment:
| Q |
109 |
ttgtctatatgcagaatttgaattggcttgacttttgtcaatctgcatttcgggctgagaaaattgaattaactgtcattgattgcctggg-aatacttg |
207 |
Q |
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| T |
27271016 |
ttgtctatgtgcataatttgaattggcttggcttttgtcaatctgcatttccggctgtgaaaactgaattaactgtcattgatttcctgggctttacttg |
27271115 |
T |
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| Q |
208 |
aaagttgttaacggatttttgtcatgatgaacagttgtcatgtgttttttctggtgaatggcaagcattgtg |
279 |
Q |
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| T |
27271116 |
gaagttgtttatggaattctgtcataatgaacagctgtcatgtgatttttctggtgaatggcaaacattgtg |
27271187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 27510534 - 27510436
Alignment:
| Q |
14 |
ttctgcccttttacttcccactaccttctataacacaattgttaaggagttaaccgcttctgacgttacttttggaatgttggtgagttgtatgattgt |
112 |
Q |
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| T |
27510534 |
ttctgcccttttacttcccactaccttttataacacaattgattaggagttaacctcttctgacgttacttttggaatgttggtgagttgtatgattgt |
27510436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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