View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18243_low_89 (Length: 290)

Name: NF18243_low_89
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18243_low_89
NF18243_low_89
[»] chr7 (2 HSPs)
chr7 (14-272)||(7970545-7970807)
chr7 (14-173)||(37576392-37576566)
[»] chr1 (2 HSPs)
chr1 (24-196)||(17582762-17582935)
chr1 (34-227)||(17590628-17590832)
[»] chr5 (13 HSPs)
chr5 (24-172)||(28474144-28474292)
chr5 (14-185)||(32739361-32739537)
chr5 (18-171)||(32558523-32558682)
chr5 (15-185)||(32656720-32656902)
chr5 (14-83)||(32652464-32652533)
chr5 (14-82)||(32660831-32660899)
chr5 (115-222)||(32857482-32857590)
chr5 (14-84)||(32662606-32662676)
chr5 (5-62)||(25468977-25469034)
chr5 (24-227)||(32762222-32762432)
chr5 (14-136)||(25477214-25477336)
chr5 (14-77)||(32767287-32767350)
chr5 (19-84)||(32857635-32857699)
[»] chr2 (1 HSPs)
chr2 (17-85)||(16751851-16751919)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 7970545 - 7970807
Alignment:
Q  14 atcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataaag----agattttatgtaaggcttgttagc 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  7970545 atcacactgaattgcaacaaaaacgaaaatcatcaaattagactttgaaccattttctataataaaataaagtaagagattttatgtaaggcttgttagc 7970644  T
Q  110 agatcatgcaatcaaaagtataaccaacataagctgatcattcttaatttattcttcttaaaatcaatgtactcaaaaacggattgcagcttgcacccaa 209  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7970645 agaccatgcaatcaaaagtataaccaacataagctgatcattcttaatttattcttcttaaaatcaatgtactcaaaaacggattgcagcttgcacccaa 7970744  T
Q  210 aatgctatagcggtatagatgatagcaatatggccacaataccaaagtttagagaaacaatac 272  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7970745 aatgctatagcggtatagatggtagcaatatggccacaataccaaagtttagagaaacaatac 7970807  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 37576566 - 37576392
Alignment:
Q  14 atcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaata-------------aagag-attttatgtaag 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| |||||||||             ||||| ||| | ||||||    
T  37576566 atcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccacctgctaaaataaaataaaataaataaaataagagaattctttgtaag 37576467  T
Q  100 gcttgttagcagatcatgcaatcaaaagtataaccaacat-aagctgatcattcttaatttattcttcttaaaat 173  Q
    |||||||||||  | ||||||||||||||||||||||||| || || |||||||||| ||||||||||| |||||    
T  37576466 gcttgttagcaagttatgcaatcaaaagtataaccaacataaatctaatcattcttagtttattcttctcaaaat 37576392  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 196
Target Start/End: Complemental strand, 17582935 - 17582762
Alignment:
Q  24 attgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataaagagattt-tatgtaaggcttgttagcagatcatgcaatc 122  Q
    |||||||||  ||||||||||||||||||||||||||||||||||  || ||||||||||| |||||| | ||||||||||||||||| || ||||||||    
T  17582935 attgcaacatcaaagaaaatcatcaaattagactttgaaccatttgttagaataaaataaa-agatttatttgtaaggcttgttagcaaattatgcaatc 17582837  T
Q  123 aaaagtataaccaacat-aagctgatcattcttaatttattcttcttaaaatcaatgtactcaaaaacggattgc 196  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||  |||| | ||||||||||  |||||||||    
T  17582836 aaaagtataaccaacataaagctaatcattctcaatttattcttcacaaaagctatgtactcaatgacggattgc 17582762  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 17590832 - 17590628
Alignment:
Q  34 aaaagaaaatcatcaaattagactttgaaccattttctataataaaata---------aagagattt-tatgtaaggcttgttagcagatcatgcaatca 123  Q
    |||||||||||||||||||||||||||| | ||||  || |||||||||         ||||||||| | ||| |||||||||||||  | |||||| ||    
T  17590832 aaaagaaaatcatcaaattagactttgatcgatttgttagaataaaatataataaaataagagatttctttgtgaggcttgttagcaagttatgcaacca 17590733  T
Q  124 aaagtataaccaacata-agctgatcattcttaatttattcttcttaaaatcaatgtactcaaaaacggattgcagcttgcacccaaaatgctatagcgg 222  Q
    ||||||||| ||||||| |||| |||||||| ||||||||||||  |||||| ||||||||||  ||||||||| ||| || || |||| ||||||| ||    
T  17590732 aaagtataatcaacatacagctaatcattctcaatttattcttcacaaaatctatgtactcaattacggattgcggctcgccccgaaaacgctatagtgg 17590633  T
Q  223 tatag 227  Q
    |||||    
T  17590632 tatag 17590628  T

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Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 28474292 - 28474144
Alignment:
Q  24 attgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataaagagattttatgtaaggcttgttagcagatcatgcaatca 123  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||  || |||||||| ||||||||   |||||||||||||||||  |  || |||||    
T  28474292 attgcaacataaaagaaaatcatcaaattatactttgaaccatttgttagaataaaat-aagagattcattgtaaggcttgttagcaagttttgtaatca 28474194  T
Q  124 aaagtataaccaacat-aagctgatcattcttaatttattcttcttaaaa 172  Q
    |||||||||||||||| ||| | |||||||| ||| ||||||||| ||||    
T  28474193 aaagtataaccaacataaaggtaatcattctcaatatattcttctcaaaa 28474144  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 32739537 - 32739361
Alignment:
Q  14 atcacactgaattgcaacaaaaaag-aaaatcatcaaattagactttgaaccattttctataataaaataaag----agattt-tatgtaaggcttgtta 107  Q
    ||||||||| |||||| |||||||  |||| ||||||||| |||||||||||| || ||||||||||||||||    | |||| | | ||||||||||||    
T  32739537 atcacactgtattgcagcaaaaaaacaaaaccatcaaattcgactttgaaccaattgctataataaaataaagtaagacatttctttataaggcttgtta 32739438  T
Q  108 gcagatcatgcaatcaaaagtataaccaacataagctgatcattcttaatttattcttcttaaaatcaatgtactcaa 185  Q
    |||  | || | ||||||||||||||||||| ||||| ||||| || | |||||||||||||||||| ||||||||||    
T  32739437 gcaagttatacgatcaaaagtataaccaaca-aagctaatcatactaagtttattcttcttaaaatctatgtactcaa 32739361  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 32558523 - 32558682
Alignment:
Q  18 cactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataaag----agattt-tatgtaaggcttgttagcaga 112  Q
    ||||||||||||||| |||||| | |||||||||||||||||||||||||   || ||||||||||||    |||||| | || ||||||||||||||      
T  32558523 cactgaattgcaacataaaagatagtcatcaaattagactttgaaccattaggtagaataaaataaagtaagagatttctttgcaaggcttgttagcatg 32558622  T
Q  113 tcatgcaatcaaaagtataaccaaca-taagctgatcattcttaatttattcttcttaaa 171  Q
    || |||||||||||||||||||||||  || || |||||||| || || |||||||||||    
T  32558623 tcgtgcaatcaaaagtataaccaacacaaaactaatcattctcaaatttttcttcttaaa 32558682  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 32656720 - 32656902
Alignment:
Q  15 tcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataaa---------gagattt-tatgtaa-ggctt 103  Q
    |||||||| |||||||||||||||||||  ||||||||| ||  |||||||||| ||| |||||||||||         || |||| ||||||| |||||    
T  32656720 tcacactgcattgcaacaaaaaagaaaacaatcaaattatacaatgaaccatttgctagaataaaataaaataaaataggacatttctatgtaaaggctt 32656819  T
Q  104 gttagcagatcatgcaatcaaaagtataaccaacata-agctgatcattcttaatttattcttcttaaaatcaatgtactcaa 185  Q
    |||||||   |||||||| |||||||||||||||||| || | |||||||| ||||||||||||| |||||||||| ||||||    
T  32656820 gttagcaagccatgcaattaaaagtataaccaacatatagttaatcattctcaatttattcttctcaaaatcaatgaactcaa 32656902  T

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Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 32652464 - 32652533
Alignment:
Q  14 atcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataa 83  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| ||||||||||    
T  32652464 atcacactgaattgcaacataaaagaaaatcatcaagttagactttgaaccatttactaaaataaaataa 32652533  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 32660831 - 32660899
Alignment:
Q  14 atcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaata 82  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||    
T  32660831 atcacactgaattgcaacaaaaaagaaactcatcaaattagacgttgaaccatttgctagaataaaata 32660899  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 32857590 - 32857482
Alignment:
Q  115 atgcaatcaaaagtataaccaacataa-gctgatcattcttaatttattcttcttaaaatcaatgtactcaaaaacggattgcagcttgcacccaaaatg 213  Q
    |||||| |||||||||||||||||||| ||| || ||||| ||||||||||||| |||||| ||||||||||  | ||||||| ||| || | ||||| |    
T  32857590 atgcaagcaaaagtataaccaacataaagctaattattctcaatttattcttctcaaaatctatgtactcaacgatggattgcggctggccctcaaaacg 32857491  T
Q  214 ctatagcgg 222  Q
    || ||||||    
T  32857490 ctctagcgg 32857482  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 32662606 - 32662676
Alignment:
Q  14 atcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataaa 84  Q
    ||||||||| | ||||||| |||||||||| |||||||||||||  ||||||||| ||| |||||||||||    
T  32662606 atcacactgtagtgcaacataaaagaaaataatcaaattagactaagaaccatttgctagaataaaataaa 32662676  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 25469034 - 25468977
Alignment:
Q  5 atggacatcatcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaa 62  Q
    |||| ||| ||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  25469034 atggccattatcacactgaattgcaacaaaaaaataaaccatcaaattagactttgaa 25468977  T

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Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 32762432 - 32762222
Alignment:
Q  24 attgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaata----aagagat-tttatgtaaggcttgttagc-agatcatg 117  Q
    ||||||||| ||||| |||||||||||||||| ||||||||||||  || |||||||||    ||||||| | | ||||||| |||  ||| || | |||    
T  32762432 attgcaacataaaagcaaatcatcaaattagagtttgaaccatttgttagaataaaataaaataagagatgtctttgtaaggattgaaagcaagtttatg 32762333  T
Q  118 caatcaaaagtataaccaacat-aagctgatcattcttaatttattcttcttaaaatcaatgtactcaaaaacggattgcagcttgcacccaaaatgcta 216  Q
     ||||||||||||||| | ||| ||||| |||||| | ||| |||| |||| |||||  ||||||||||  ||||||||||  | ||  |||||| ||||    
T  32762332 aaatcaaaagtataacaaccataaagctaatcattttcaatatattattctcaaaatttatgtactcaatgacggattgcaaatagcctccaaaacgcta 32762233  T
Q  217 tagcggtatag 227  Q
    |||||| ||||    
T  32762232 tagcggcatag 32762222  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 25477336 - 25477214
Alignment:
Q  14 atcacactgaattgcaacaaaaaagaaaatc-atcaaattagactttgaaccattttctataataaaataaagagattt-tatgtaaggcttgttagcag 111  Q
    |||||||| ||||||||||||||| |||| | |||||||||||||||||| ||||||||| || | || ||| | |||| | |||||||||||||||||     
T  25477336 atcacactaaattgcaacaaaaaaaaaaacccatcaaattagactttgaagcattttctagaa-agaaaaaacatatttctttgtaaggcttgttagcaa 25477238  T
Q  112 atcatgcaatcaaaagtataaccaa 136  Q
     |  ||| |||||||||||||||||    
T  25477237 gttctgc-atcaaaagtataaccaa 25477214  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 32767350 - 32767287
Alignment:
Q  14 atcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataata 77  Q
    |||||||||||||| |||||||| |||| |||| ||||||||||||| | || || ||||||||    
T  32767350 atcacactgaattgaaacaaaaatgaaattcattaaattagactttggaacagttgctataata 32767287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 32857699 - 32857635
Alignment:
Q  19 actgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataaa 84  Q
    |||||| ||||||||||||| || ||| |||||||||| ||||||||||| ||| |||| ||||||    
T  32857699 actgaaatgcaacaaaaaaggaa-tcagcaaattagacgttgaaccatttgctagaatataataaa 32857635  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 16751919 - 16751851
Alignment:
Q  17 acactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataaag 85  Q
    |||||||||| ||||| ||| | |||||| ||||||||||||||||||||||  || | ||||||||||    
T  16751919 acactgaatttcaacataaatgtaaatcaccaaattagactttgaaccatttgatagagtaaaataaag 16751851  T

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