View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_92 (Length: 284)
Name: NF18243_low_92
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_92 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 12368750 - 12369009
Alignment:
| Q |
9 |
aggatagttcttctcattgcttgaaatgaaccaacattattcattctaaatttgaccttaatataaataatgttggggttccactctagggacataatat |
108 |
Q |
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| T |
12368750 |
aggatagttcttctcattgcttgaaatgaaccaacattattcattctaaatttgacctgaatataaataatgttggggttccactctagggacataatat |
12368849 |
T |
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| Q |
109 |
ctccaatggcatgtaccattaaccgatcagagtgtgccatatcatggcacaccttttnnnnnnnnnnnnnnnnnnnnngctttatgagaaaacaaaacca |
208 |
Q |
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| T |
12368850 |
ctctaatggcatgtaccattgatcgatcagagtgtgccat---atgacacaccttttaaaaaaaataaaaataaaaaagctttatgagaaaacaaaacca |
12368946 |
T |
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| Q |
209 |
ggaactcgttcctcttctcccttcctcctacatcacttttcaactcatcgtcaactttcctctctgct |
276 |
Q |
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| T |
12368947 |
gg-----gttcctcttctccctgcctcctacatcacttttcaactcatcgtcaactttcctccctgct |
12369009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 12369001 - 12369046
Alignment:
| Q |
225 |
ctcccttcctcctacatcacttttcaactcatcgtcaactttcctc |
270 |
Q |
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| T |
12369001 |
ctccctgcttcctacatcacttttcaactcatcgtcaactttcctc |
12369046 |
T |
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