View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18243_low_93 (Length: 281)
Name: NF18243_low_93
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_93 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] scaffold0608 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 46933776 - 46933511
Alignment:
| Q |
16 |
caagcatcttcaatataggnnnnnnntctgccacatttggcgagccaacgagttttgtaatattagtcaccaagtccttgaactctcctgcttcaccatt |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46933776 |
caagcatcttcaatataggaaaaaaatctgccacatttggcgagccaacgagttttgtaatattagtcaccaagtccttgaactctcctgcttcaccatt |
46933677 |
T |
|
| Q |
116 |
agactgaatcaaatccacagagaaaattgtgtttgacaacagatttatggtggtcttgaaaactgctgttccgatatctattgcttcaccgatttgactg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46933676 |
agactgaatcaaatccacagagaaaattgtgtttgacaacagatttatggtggtcttgaaaactgctgttccgatatctattgcttcaccgatttgactg |
46933577 |
T |
|
| Q |
216 |
ctttgattgatatcattgagaagctgttgcattttcttgcgtctaacatcttgactagcatcaaga |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46933576 |
ctttgattgatatcattgagaagctgttgcattttcttgcgtctaacatcttgactagcatcaaga |
46933511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 66 - 281
Target Start/End: Original strand, 11107197 - 11107412
Alignment:
| Q |
66 |
agttttgtaatattagtcaccaagtccttgaactctcctgcttcaccattagactgaatcaaatccacagagaaaattgtgtttgacaacagatttatgg |
165 |
Q |
| |
|
||||||||||||| ||| |||| ||||| |||||||| ||| |||||||||| ||||||||||| ||||||||||| |||||||| || | ||| |||| |
|
|
| T |
11107197 |
agttttgtaatatcggtcgccaaatccttaaactctccagctgcaccattagattgaatcaaatctacagagaaaatagtgtttgataataaattgatgg |
11107296 |
T |
|
| Q |
166 |
tggtcttgaaaactgctgttccgatatctattgcttcaccgatttgactgctttgattgatatcattgagaagctgttgcattttcttgcgtctaacatc |
265 |
Q |
| |
|
| |||||||| ||| |||||| || |||||||||||||| |||||||||||||||| |||||| | ||||| ||| | |||||| |||| |||||||| |
|
|
| T |
11107297 |
tagtcttgaacactattgttccaatgtctattgcttcaccaatttgactgctttgatgaatatcactaagaagttgtcgaattttcatgcgcctaacatc |
11107396 |
T |
|
| Q |
266 |
ttgactagcatcaaga |
281 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11107397 |
ttgactagcatcaaga |
11107412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 45 - 281
Target Start/End: Complemental strand, 46926882 - 46926646
Alignment:
| Q |
45 |
gccacatttggcgagccaacgagttttgtaatattagtcaccaagtccttgaactctcctgcttcaccattagactgaatcaaatccacagagaaaattg |
144 |
Q |
| |
|
||||||||||| | ||| | ||||| || ||||| ||||||| ||||| || ||||||||| ||||||| || ||||||||||||| ||||||||| | |
|
|
| T |
46926882 |
gccacatttggtgttccagcaagtttggttatattcgtcaccacatccttaaattctcctgctgcaccatttgagtgaatcaaatccatagagaaaatgg |
46926783 |
T |
|
| Q |
145 |
tgtttgacaacagatttatggtggtcttgaaaactgctgttccgatatctattgcttcaccgatttgactgctttgattgatatcattgagaagctgttg |
244 |
Q |
| |
|
||||||| | | ||||||||| |||||||| ||| |||||| || || || |||||||| |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
46926782 |
tgtttgatagtaaatttatggtagtcttgaacactattgttccaatgtcaatagcttcaccaattttactgctttgatggatatcattgagaagctgttg |
46926683 |
T |
|
| Q |
245 |
cattttcttgcgtctaacatcttgactagcatcaaga |
281 |
Q |
| |
|
||||| || || ||||| ||||| || ||||||||| |
|
|
| T |
46926682 |
aatttttttacgcctaacgtcttggctggcatcaaga |
46926646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 66 - 205
Target Start/End: Complemental strand, 11112284 - 11112145
Alignment:
| Q |
66 |
agttttgtaatattagtcaccaagtccttgaactctcctgcttcaccattagactgaatcaaatccacagagaaaattgtgtttgacaacagatttatgg |
165 |
Q |
| |
|
||||||||||||| ||| |||| ||||| |||||||| ||| |||||||||| ||||||||||| ||||||||||| |||||||| || | ||| |||| |
|
|
| T |
11112284 |
agttttgtaatatccgtcgccaaatccttaaactctccagctgcaccattagattgaatcaaatctacagagaaaatagtgtttgataataaattgatgg |
11112185 |
T |
|
| Q |
166 |
tggtcttgaaaactgctgttccgatatctattgcttcacc |
205 |
Q |
| |
|
| |||||||| ||| |||||| ||||||||||||||||| |
|
|
| T |
11112184 |
tagtcttgaacactattgttccaatatctattgcttcacc |
11112145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 66 - 281
Target Start/End: Original strand, 2636 - 2851
Alignment:
| Q |
66 |
agttttgtaatattagtcaccaagtccttgaactctcctgcttcaccattagactgaatcaaatccacagagaaaattgtgtttgacaacagatttatgg |
165 |
Q |
| |
|
||||||||||||| ||| |||| ||||| |||||||| ||| |||||||||| ||||||||||| ||||||||||| |||||||| || | ||| |||| |
|
|
| T |
2636 |
agttttgtaatatccgtcgccaaatccttaaactctccagctgcaccattagattgaatcaaatctacagagaaaatagtgtttgataataaattgatgg |
2735 |
T |
|
| Q |
166 |
tggtcttgaaaactgctgttccgatatctattgcttcaccgatttgactgctttgattgatatcattgagaagctgttgcattttcttgcgtctaacatc |
265 |
Q |
| |
|
| |||||||| ||| |||||| || |||||||||||||| |||||||||||||||| |||||| | ||||| ||| | |||||| |||| |||||||| |
|
|
| T |
2736 |
tagtcttgaacactattgttccaatgtctattgcttcaccaatttgactgctttgatgaatatcactaagaagttgtcgaattttcatgcgcctaacatc |
2835 |
T |
|
| Q |
266 |
ttgactagcatcaaga |
281 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2836 |
ttgactagcatcaaga |
2851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 205
Target Start/End: Complemental strand, 7720 - 7581
Alignment:
| Q |
66 |
agttttgtaatattagtcaccaagtccttgaactctcctgcttcaccattagactgaatcaaatccacagagaaaattgtgtttgacaacagatttatgg |
165 |
Q |
| |
|
||||| ||||||| ||| |||| ||||| |||||||| ||| |||||||||| ||||||||||| ||||||||||| |||||||| || | ||| |||| |
|
|
| T |
7720 |
agtttggtaatatcggtcgccaaatccttaaactctccagctgcaccattagattgaatcaaatctacagagaaaatagtgtttgataataaattgatgg |
7621 |
T |
|
| Q |
166 |
tggtcttgaaaactgctgttccgatatctattgcttcacc |
205 |
Q |
| |
|
| |||||||| ||| |||||| ||||||||||||||||| |
|
|
| T |
7620 |
tagtcttgaacactattgttccaatatctattgcttcacc |
7581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University