View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_96 (Length: 277)
Name: NF18243_low_96
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_96 |
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| [»] scaffold0114 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 70 - 262
Target Start/End: Complemental strand, 45419976 - 45419784
Alignment:
| Q |
70 |
ccagttacattattattgacgaggacagaatagtcaacagtctctacacacatcataatctatttgatccattgataggtgaaactcattttcaacatga |
169 |
Q |
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| T |
45419976 |
ccagttacattattattgacgaggacagaatagtcaacagtctctacacacatcataatccatttgatcaattgataggtgaaacccattttcaacatga |
45419877 |
T |
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| Q |
170 |
cccctcgcaagtatctccagtcaattatatcataagccttgctgatatcaagtttaagtgctacatccccaattttccctttaactttagact |
262 |
Q |
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| T |
45419876 |
cccctcgcaagtaactccagtcaattctatcataatccttgctgatatcaagcttaaatgctacatcctcaattttccctttaactttagact |
45419784 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 34933034 - 34932986
Alignment:
| Q |
94 |
acagaatagtcaacagtctctacacacatcataatctatttgatccatt |
142 |
Q |
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| T |
34933034 |
acagaatagtcaacagtctctacacacatcataatccattggatccatt |
34932986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 2437493 - 2437445
Alignment:
| Q |
94 |
acagaatagtcaacagtctctacacacatcataatctatttgatccatt |
142 |
Q |
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| T |
2437493 |
acagaatagtcgactgtctcaacacacatcataatccattggatccatt |
2437445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 13692 - 13740
Alignment:
| Q |
94 |
acagaatagtcaacagtctctacacacatcataatctatttgatccatt |
142 |
Q |
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| T |
13692 |
acagaatagtcaactgtttctacacacatcataatccattggatccatt |
13740 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 25750877 - 25750925
Alignment:
| Q |
94 |
acagaatagtcaacagtctctacacacatcataatctatttgatccatt |
142 |
Q |
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| T |
25750877 |
acagaatagtcaactgtttctacacacatcataatccattggatccatt |
25750925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 17189327 - 17189364
Alignment:
| Q |
16 |
agatagggcgagagagggtcgccctgccgtaaacccct |
53 |
Q |
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| T |
17189327 |
agatagggtgagagtgggtcgccctgccgtaaacccct |
17189364 |
T |
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