View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_97 (Length: 273)
Name: NF18243_low_97
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_97 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 8218183 - 8218424
Alignment:
| Q |
20 |
ggctggccataatgctgactgctgagctatatttttacatgttcctttcgtttttgtttccagttgcagaatgacaacatcaatcttttccgcctaatca |
119 |
Q |
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| T |
8218183 |
ggctggccataatgctgacttctgagctatatttttacatgttcctttagtttttgtttccagttgcagaatgacaacatcaatcttttccgcctaatca |
8218282 |
T |
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| Q |
120 |
aagacaatgttaacaaagttttgaacgagtaagttgtaataaactgtttttagtctattatacaagtgatcatatgtttattaatgataataaactaact |
219 |
Q |
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| T |
8218283 |
aagacaatgttaacaaagttttgaacgagtaagttgtaataaactgtttttagtctattatacaagtgatcatatgtttattaatgataataaactaact |
8218382 |
T |
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| Q |
220 |
actaaattaaattaagtgttgtttttaccaccacaccacctt |
261 |
Q |
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| T |
8218383 |
actaaattaaattaagtgttgtttttaccaccacaccacctt |
8218424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 8226131 - 8226187
Alignment:
| Q |
114 |
taatcaaagacaatgttaacaaagttttgaacgagtaagttgtaataaactgtttttagt |
173 |
Q |
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| T |
8226131 |
taatcaaagacaatgttgataaagttttgaatgagtaagttg---taaactgtttttagt |
8226187 |
T |
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