View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_98 (Length: 272)
Name: NF18243_low_98
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_98 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 47925247 - 47925007
Alignment:
| Q |
20 |
atatatttatttcttatcttttcttgtcattttaacatgttattagtataaggttaatttaacattgatcattgtatatgaatatgagtatgaaggaaca |
119 |
Q |
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| T |
47925247 |
atatctttatttcttttcttttcttgtcattttaacatgttattagtataaggttaatttaacattgatcattttatatga------gtatgaaggaaca |
47925154 |
T |
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| Q |
120 |
tggataactgcgagtgcacacatagtgacgactataataggatctggagtgttgtcattggcatgggctgttgctcagttgggttggattgcagggacta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47925153 |
tggataactgcgagtgcacacatagtgacgactataataggatctggagtgttgtcattggcatgggctgttgctcagttgggttggattgcagggacta |
47925054 |
T |
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| Q |
220 |
tcactctcatcatcttttcagccattactctcctcacttcttctctc |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47925053 |
tcactctcatcatcttttcagccattactctcctcacttcttgtctc |
47925007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 108 - 261
Target Start/End: Complemental strand, 47911121 - 47910968
Alignment:
| Q |
108 |
tatgaaggaacatggataactgcgagtgcacacatagtgacgactataataggatctggagtgttgtcattggcatgggctgttgctcagttgggttgga |
207 |
Q |
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||||||||||||||| | ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
47911121 |
tatgaaggaacatgggtgactgcaagtgcacacatagtgactgctgtaataggatctggagtgttgtcattggcatgggctgttgcacaattgggttgga |
47911022 |
T |
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| Q |
208 |
ttgcagggactatcactctcatcatcttttcagccattactctcctcacttctt |
261 |
Q |
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| T |
47911021 |
ttgcagggagttttattctcatactcttttcactcatcactctcctcacttctt |
47910968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 266
Target Start/End: Complemental strand, 47919934 - 47919777
Alignment:
| Q |
109 |
atgaaggaacatggataactgcgagtgcacacatagtgacgactataataggatctggagtgttgtcattggcatgggctgttgctcagttgggttggat |
208 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
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| T |
47919934 |
atgaaggatcatgggtaactgcgagtgcacacatagtgactgctgtgataggatctggagtgttgtcattggcatgggctgttgcacaattgggctggat |
47919835 |
T |
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| Q |
209 |
tgcagggactatcactctcatcatcttttcagccattactctcctcacttcttctctc |
266 |
Q |
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||||||| ||| |||||| |||| ||| ||| |||||||||||||||| |||| |
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| T |
47919834 |
tgcagggtgtattgttctcatactcttctcactcatcactctcctcacttcttttctc |
47919777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 47904022 - 47903911
Alignment:
| Q |
109 |
atgaaggaacatggataactgcgagtgcacacatagtgacgactataataggatctggagtgttgtcattggcatgggctgttgctcagttgggttggat |
208 |
Q |
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|||||||||||||| | ||| |||||||||||||||||||| || ||||||| |||||||||||||| |||||||||| |||||||||||||| ||||| |
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| T |
47904022 |
atgaaggaacatggttcacttcgagtgcacacatagtgacggctgtaatagggtctggagtgttgtcgctggcatgggccgttgctcagttgggatggat |
47903923 |
T |
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| Q |
209 |
tgcagggactat |
220 |
Q |
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| T |
47903922 |
cggagggactat |
47903911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 42996970 - 42997012
Alignment:
| Q |
154 |
taataggatctggagtgttgtcattggcatgggctgttgctca |
196 |
Q |
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|||||||||||||||||||||||||| ||| |||| ||||||| |
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| T |
42996970 |
taataggatctggagtgttgtcattgacattggctattgctca |
42997012 |
T |
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