View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_99 (Length: 272)
Name: NF18243_low_99
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_99 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 28311021 - 28310760
Alignment:
| Q |
1 |
caactttacagatgaacagggaaaaaggatattacccttggaccattacattttgaatgttggggatgtagagcacattatttctattgaaatttattga |
100 |
Q |
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| T |
28311021 |
caactttacagatgaacagggaaaaaggatattacccttggaccattacattttgaatgttggggatgtagagcacattatttctattgaaatttattga |
28310922 |
T |
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| Q |
101 |
ttgtttgtagaatgtcaactgtgtaattctttgataagttgaaattttactnnnnnnntaatcaaaaagtgtattgtaaatttcaatttatagtgtacta |
200 |
Q |
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| T |
28310921 |
ttgtttgtagaatgtcatctgtgtaattctttgataagttgaaattttactaaaaaaataatcaaaaagtgtattgtaaatttcaatttatagtgtacta |
28310822 |
T |
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| Q |
201 |
tgttttcacatgttgggtttaatgtgaactcaacaatctcatagagaacaattctaattcat |
262 |
Q |
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| T |
28310821 |
tgttttcacatgttgggtttaatgtgaactcaacaatctcatagagaacaattctaattcat |
28310760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 30 - 262
Target Start/End: Complemental strand, 28306013 - 28305787
Alignment:
| Q |
30 |
tattacccttggaccattacattttgaatgttggggatgtagagcacattatttctattgaaatttattgattgtttgtagaatgtcaactgtgtaattc |
129 |
Q |
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| T |
28306013 |
tattaccattgggccattacattttgaatgtaggggatgtataacacattgtccctattgaaatttattgattggttgtaaaatgtcaactgtgtgattc |
28305914 |
T |
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| Q |
130 |
tttgataagttgaaattttactnnnnnnntaatcaaa-aagtgtattgtaaatttcaatttatagtgtactatgttttcacatgttgggtttaatgtgaa |
228 |
Q |
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| T |
28305913 |
tttgataagttgaaattttagta-------aaacaaataagtgtatagtaaagttcaatttataatgtactatgttttcacatgttgagtttattgtaaa |
28305821 |
T |
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| Q |
229 |
ctcaacaatctcatagagaacaattctaattcat |
262 |
Q |
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| T |
28305820 |
ctcaacaatttcattgggaacaattctaattcat |
28305787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 13197577 - 13197731
Alignment:
| Q |
4 |
ctttacagatgaacagggaaaaaggatattacccttggaccattacattttgaatgttggggatgtagagcacattatttctattgaaat-------tta |
96 |
Q |
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|||| |||||||||| |||||||||||||| ||||||| | || | |||||||| || |||||||| || |||||| ||||||||||||| ||| |
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| T |
13197577 |
ctttgcagatgaacaaggaaaaaggatattgcccttgggcaatcatattttgaacgtaggggatgttgaacacattgtttctattgaaatttattgatta |
13197676 |
T |
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| Q |
97 |
ttgattgtttgtagaatgtcaactgtgtaattctttgataagttgaaattttact |
151 |
Q |
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| T |
13197677 |
ttgattggttgtagaatgtcaattgtgtaattccttgatgagttgacattttact |
13197731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 19795773 - 19795830
Alignment:
| Q |
205 |
ttcacatgttgggtttaatgtgaactcaacaatctcatagagaacaattctaattcat |
262 |
Q |
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| T |
19795773 |
ttcacatgctgggtttattgtgaactcaacaatctcatatagaacaattgtaattcat |
19795830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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