View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18244_high_14 (Length: 340)
Name: NF18244_high_14
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 3 - 324
Target Start/End: Complemental strand, 29871181 - 29870860
Alignment:
| Q |
3 |
aatgcaatagaacttacgcaaccactccttgggaagcagcatcatcatcctgtatatcaagatgattcaatctgagagcagtgttatcaccggcggctgt |
102 |
Q |
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| T |
29871181 |
aatgcaatagaacttacgcaactactccttgggaagcagcatcatcatcctgtatatcaagatgattcaatctgagagcagtgttatcaccggcggctgt |
29871082 |
T |
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| Q |
103 |
cccaatcgtctgctcgcttcggctagacgctaacccgccggcactcctgctggttgagcctgattgtcccgaaatcgtagttccacaaccgataaattcc |
202 |
Q |
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| T |
29871081 |
cccaatcgtctgctcgcttcggctagacgctaacccgccggcactcctgctggttgagcctgattgtcccgaaatcgtagttccacaaccgataaattcc |
29870982 |
T |
|
| Q |
203 |
tcctcatcttcgtcgacacacgattgctgcgatcttgttcccatcgtttggcaacaaaaccctaattcagttgtagtttcgttttctgaggtgaaatgat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29870981 |
tcctcatcttcgtcgacacacgattgctgcgatcttgttcccatcgtttggcaacaaaaccctaattcagttgtagtttcgttttctgaggtgaaatgat |
29870882 |
T |
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| Q |
303 |
cgagtgcagagggagaatttga |
324 |
Q |
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|||||||||||||||||||||| |
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| T |
29870881 |
cgagtgcagagggagaatttga |
29870860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 38 - 233
Target Start/End: Complemental strand, 29865595 - 29865403
Alignment:
| Q |
38 |
gcagcatcatcatcctgtatatcaagatgattcaatctgagagcagtgttatcaccggcggctgtcccaatcgtctgctcgcttcggctagacgctaacc |
137 |
Q |
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| T |
29865595 |
gcagcatcatcatcctgtatatcaagatgattcaatttgagagcagcgttatcaccggcggctgtccccgtggtctgctcactccggctagacggtaac- |
29865497 |
T |
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| Q |
138 |
cgccggcactcctgctggttgagcctgattgtcccgaaatcgtagttccacaaccgataaattcctcctcatcttcgtcgacacacgattgctgcg |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |||||||| ||| ||||||| |||| |
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| T |
29865496 |
--ccggcactcctgctggttgagcctgattgtcccgaaatcgtagttccacaacccatcaattcctcatcctcttcgtccacagacgattgatgcg |
29865403 |
T |
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