View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18244_high_16 (Length: 338)
Name: NF18244_high_16
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 27935538 - 27935220
Alignment:
| Q |
1 |
tcagatggaacttcatttaggaagcgctctagataatgaagtaaaaagaggccacaatcaaatttgttttcctgctgtggtacctgtcaaggacattcag |
100 |
Q |
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| T |
27935538 |
tcagatggaatttcatctaggaagcgctctagataatgaagtaaaaagaggccacaatcaaatttgttttcctgctgtggtacctgtcaaggacattcag |
27935439 |
T |
|
| Q |
101 |
tcacaacattagtaaaagcacagtcaaatggagaaaatagaaagttgttcgatgataactcaactaatcatcagccagagataggagaggaataaattca |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27935438 |
tcacaacattagtaaaagcacaatcaaatggagaaaatagaaagttgttcgatgataactcaactaatcatcagccagagataggagaggaataaattca |
27935339 |
T |
|
| Q |
201 |
aaaatcattaggcctcaatttaacagagaatgaaaagactaacattcatcaataactattgaaaacaattttgcaatagaaaccggccacttttgtagtg |
300 |
Q |
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| T |
27935338 |
aaaatcattaggcctcaatttaacagagaatgaaaagactaacattcatcaataactattgaaaacaattttgcaatagaaaccggccacttttgtagtg |
27935239 |
T |
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| Q |
301 |
gtttaccaaatgacgtaga |
319 |
Q |
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||||||||||||||||||| |
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| T |
27935238 |
gtttaccaaatgacgtaga |
27935220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 28082350 - 28082533
Alignment:
| Q |
21 |
gaagcgctctagataatgaagtaaaaagaggccacaatcaaatttgttttcctgctgtggtacctgtcaaggacattcagtcacaacattagtaaaagca |
120 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28082350 |
gaagagctctagataatgaagcaaaaagaggccacaatcaaatgagttttcctgctgtggtacctgtcaaggacattcagtcacaacattagtaaaagca |
28082449 |
T |
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| Q |
121 |
cagtcaaatggagaaaatagaaagttgttcgatgataactcaactaatcatcagccagagataggagaggaataaattcaaaaa |
204 |
Q |
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| T |
28082450 |
caatcaaatggagaaaatagaaagttgttcgatgataactcaactaatcatcagccagagataggcgagaaataaattcaaaaa |
28082533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 27929487 - 27929304
Alignment:
| Q |
21 |
gaagcgctctagataatgaagtaaaaagaggccacaatcaaatttgttttcctgctgtggtacctgtcaaggacattcagtcacaacattagtaaaagca |
120 |
Q |
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|||| |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||| || |
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| T |
27929487 |
gaagagctccagataatgaagcaaaaagaggccacaatcaaatgagttttcctgctgtggtatctgtcaaggacattcaatcacaacattagtaaaaaca |
27929388 |
T |
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| Q |
121 |
cagtcaaatggagaaaatagaaagttgttcgatgataactcaactaatcatcagccagagataggagaggaataaattcaaaaa |
204 |
Q |
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|| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
27929387 |
caatgaattggagaaaatagaaagttgttcgatgataactcaactaatcatcagccagagataggcgagaaataaattcaaaaa |
27929304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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