View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18244_high_19 (Length: 308)

Name: NF18244_high_19
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18244_high_19
NF18244_high_19
[»] chr1 (1 HSPs)
chr1 (18-308)||(39478797-39479087)


Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 39479087 - 39478797
Alignment:
Q  18 aatattcaaccacaaaagcaaaatcctgacggaaacacccttcagtttataaagtctattctgcgaaatcacaccactgatagtagatttgtaactaagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39479087 aatattcaaccacaaaagcaaaatcctgacggaaacacccttcagtttataaagtctattctgcgaaatcacaccactgatagtagatttgtaactaagt 39478988  T
Q  118 gtataactctcaataacaaagctacaagttttctcgaaatacacagaaaattgacctgtttctctgttaagggaatacccaattgctccttttggaagaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39478987 gtataactctcaataacaaagctacaagttttctcgaaatacacagaaaattgacctgtttctctgttaagggaatacccaattgctccttttggaagaa 39478888  T
Q  218 gacccattgggaaaccgtattccattagaagatcgtatgctgataaattttttggttcgattaaggtacatgatgataatgatgatgatat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39478887 gacccattgggaaaccgtattccattagaagatcgtatgctgataaattttttggttcgattaaggtacatgatgataatgatgatgatat 39478797  T

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