View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18244_high_20 (Length: 293)
Name: NF18244_high_20
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 45254673 - 45254408
Alignment:
| Q |
10 |
aagaatatggttgaccatgtttacaagtcaggtacagtaactaaacaggatctcatatcaatctctatacattacatactaaagcacaaacagaataaac |
109 |
Q |
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| T |
45254673 |
aagaaaatggttgaccatgtttacaagtcaggtacagtaactaaacagcatctcatatcaatctctatacattacatactaaagcacaaacagaataaac |
45254574 |
T |
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| Q |
110 |
tgaagcttgaggcacataaattgcatccctcatcagaaaatatcaaatacagttttcaatacacataattgaatctggcaaattcacaaacttaccctgt |
209 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45254573 |
tgaagctagaggcacataaattgcatccctcatcagaaaatatcaaatacagtattcaatacacataattgaatctggcaaattcacaaacttaccctgt |
45254474 |
T |
|
| Q |
210 |
tacttctcttggacattgaatcttctctatgataaagcatcatagacagttcttgtgagtggtact |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45254473 |
tacttctcttggacattgaatcttctctatgataaagcatcatagacagttcttgtgagtggtact |
45254408 |
T |
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