View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18244_high_21 (Length: 291)
Name: NF18244_high_21
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 1103832 - 1104089
Alignment:
| Q |
18 |
aatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgattttccttgtgatactttgttgccag |
117 |
Q |
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| T |
1103832 |
aatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgattttccttgtgatactttgttgccag |
1103931 |
T |
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| Q |
118 |
acatgaagcttggatgggacctaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggatgatccgtcttcgggagattttacttgggctat |
217 |
Q |
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| T |
1103932 |
acatgaagcttggatgggacctaaaaaccggtcttaatcgtcaattaacttcatggaaaaattgggatgatccgtcttcgggagattttacttgggctat |
1104031 |
T |
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| Q |
218 |
tgtccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcatagg |
275 |
Q |
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| T |
1104032 |
tgtccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcatagg |
1104089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 1087276 - 1087532
Alignment:
| Q |
18 |
aatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgattttccttgtgatactttgttgccag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1087276 |
aatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgattttccttgtgatactttgttgccag |
1087375 |
T |
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| Q |
118 |
acatgaagcttggatgggacctaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggatgatccgtcttcgggagattttacttgggctat |
217 |
Q |
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| T |
1087376 |
acatgaagcttggatgggacctaaaaaccggtcttaatcgtcaattaacttcatggaaaagttgggacgatccatcttcgggagatttaacttggggtat |
1087475 |
T |
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| Q |
218 |
tgtccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcatag |
274 |
Q |
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| T |
1087476 |
tgtccttagtagtaatccagaagttgtattgaaaaaaggatcagttgagattcatag |
1087532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 1046802 - 1047059
Alignment:
| Q |
18 |
aatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgattttccttgtgatactttgttgccag |
117 |
Q |
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| T |
1046802 |
aatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgattttccttgtgatactttgttgccag |
1046901 |
T |
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| Q |
118 |
acatgaagcttggatgggacctaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggatgatccgtcttcgggagattttacttgggctat |
217 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||| ||| |
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| T |
1046902 |
acatgaagcttggatgggacctaaaaattggtcttaatcgtccattaacttcttggaaaaattgggacgatccatcttcgggagatttaacttggggtat |
1047001 |
T |
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| Q |
218 |
tgtccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcatagg |
275 |
Q |
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| T |
1047002 |
tgtccttcgtagtaatccagaaattgttttgaaaagaggatcagttgaaattcatagg |
1047059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 1071615 - 1071868
Alignment:
| Q |
18 |
aatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgattttccttgtgatactttgttgccag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1071615 |
aatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgattttccttgtgatactttgttggcag |
1071714 |
T |
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| Q |
118 |
acatgaagcttggatgggacctaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggatgatccgtcttcgggagattttacttgggctat |
217 |
Q |
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| T |
1071715 |
gcatgaagcatggatgggacttaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggacgatccatcatcgggagatttaacatggggtat |
1071814 |
T |
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| Q |
218 |
tgtccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattca |
271 |
Q |
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| T |
1071815 |
tgtccttcatagtaatccagaaattgtattgaaaaaaggatcagttgaaattca |
1071868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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