View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18244_high_30 (Length: 215)
Name: NF18244_high_30
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 52848879 - 52849059
Alignment:
| Q |
16 |
agaccatattgttaacatctcaactaaatctaacgattcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatct |
115 |
Q |
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| T |
52848879 |
agaccatcttgttaacatctcaactaaatctaacgattcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatct |
52848978 |
T |
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| Q |
116 |
tctatagggaatggacatagtgatcaagatgctcctcagcgaaaagttgaggacattaaaaggtccagtgaccatcttgtg |
196 |
Q |
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| T |
52848979 |
tctatagggaatggacatagtgatcaagatgctcctcagcgaaaagttgaggacattaaaaggtccagtgaccatcttgtg |
52849059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 52847407 - 52847531
Alignment:
| Q |
53 |
tcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatcaagatgctcctc |
152 |
Q |
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| T |
52847407 |
tcatttgaatctgaaacttgttgtatggctaccatatctcttcctcaggtagaatgtaaatcatctatatggaatgggcatagtgatcaagatgctcctc |
52847506 |
T |
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| Q |
153 |
agcgaaaagttgaggacattaaaag |
177 |
Q |
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| T |
52847507 |
aggaaaaaattgaggacattaaaag |
52847531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 41 - 176
Target Start/End: Original strand, 52847731 - 52847866
Alignment:
| Q |
41 |
aaatctaacgattcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatc |
140 |
Q |
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| T |
52847731 |
aaatctattgattcatttgaatctaaaccatgttgcatggatgcaatgtctctccctcaggtagaatgtaaatcatctatatggaatgggcatagtgatc |
52847830 |
T |
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| Q |
141 |
aagatgctcctcagcgaaaagttgaggacattaaaa |
176 |
Q |
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| T |
52847831 |
aatatgctcctcagaaaaaaattgaggacgttaaaa |
52847866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 195
Target Start/End: Original strand, 52848748 - 52848890
Alignment:
| Q |
53 |
tcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatcaagatgctcctc |
152 |
Q |
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| T |
52848748 |
tcatttgaatcggaaccctgttgcatggctgccatatctcttccttttgtagatggcaagtcatttgtagggaatgggcatagtgatcaagatgctcctc |
52848847 |
T |
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| Q |
153 |
agcgaaaagttgaggacattaaaaggtccagtgaccatcttgt |
195 |
Q |
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| T |
52848848 |
aacaaaaaactgaggatattaaaaggaccaaagaccatcttgt |
52848890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 52848614 - 52848723
Alignment:
| Q |
87 |
tgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatcaagatgctcctcagcgaaaagttgaggacattaaaaggtccagtga |
186 |
Q |
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| T |
52848614 |
tgtctcctcgtcaggtagattgtaaatcatctacagggaatggacatagtgatcaatatgttcctcaacaaaaaattgaggacattaaaaggacgaacga |
52848713 |
T |
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| Q |
187 |
ccatcttgtg |
196 |
Q |
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| T |
52848714 |
ccatcttgtg |
52848723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 52847287 - 52847364
Alignment:
| Q |
101 |
gtagatggtaaatcttctatagggaatggacatagtgatcaagatgctcctcagcgaaaagttgaggacattaaaagg |
178 |
Q |
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| T |
52847287 |
gtagatggtaaatcacccatggggagtggacatagtgatcaagatgctcctcagcaaaaaattgaggacattaaaagg |
52847364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 52847575 - 52847700
Alignment:
| Q |
53 |
tcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatcaagatgctcctc |
152 |
Q |
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||||||||||| ||| | |||| ||| || ||||||||| |||||||||||| ||||||| |||| || |||||| ||||||| | ||||||||||| |
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| T |
52847575 |
tcatttgaatcggaaacgtgttgtatggctcccatgtctcctcctcaggtagaacgtaaatcatctacagagaatgggcatagtggtgaagatgctccta |
52847674 |
T |
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| Q |
153 |
agcgaaaagttgaggacattaaaagg |
178 |
Q |
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| T |
52847675 |
agcaaaaaattgaggacattaaaagg |
52847700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 188
Target Start/End: Original strand, 52847899 - 52848046
Alignment:
| Q |
41 |
aaatctaacgattcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatc |
140 |
Q |
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|||||||| || |||| |||||| ||| || ||||||||| ||| ||||| ||||| |||||| ||||||| |||| |||| ||| |||| ||||| |
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| T |
52847899 |
aaatctaatgactcatatgaatcagaatccttttgcatgacagccccgtctcatcctctggtagaatgtaaatcatctaaaggggatgagcataatgatc |
52847998 |
T |
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| Q |
141 |
aagatgctcctcagcgaaaagttgaggacattaaaaggtccagtgacc |
188 |
Q |
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| T |
52847999 |
aagatgatcctcaactaaaaattgaggacattaaaaggaccaatgacc |
52848046 |
T |
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