View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18244_high_5 (Length: 578)

Name: NF18244_high_5
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18244_high_5
NF18244_high_5
[»] chr3 (15 HSPs)
chr3 (1-565)||(49682072-49682646)
chr3 (74-195)||(3973802-3973923)
chr3 (74-224)||(3995926-3996075)
chr3 (74-195)||(4009482-4009603)
chr3 (91-223)||(21813124-21813256)
chr3 (80-188)||(32606385-32606493)
chr3 (98-225)||(39144981-39145107)
chr3 (76-224)||(34285341-34285485)
chr3 (74-193)||(7278163-7278282)
chr3 (85-162)||(31294370-31294447)
chr3 (86-194)||(29212701-29212809)
chr3 (166-223)||(1996097-1996154)
chr3 (148-225)||(25845942-25846019)
chr3 (85-193)||(29484833-29484942)
chr3 (80-124)||(11465692-11465736)
[»] chr1 (24 HSPs)
chr1 (74-224)||(14758548-14758698)
chr1 (71-225)||(44920204-44920358)
chr1 (80-182)||(41649881-41649983)
chr1 (91-200)||(30529360-30529469)
chr1 (74-223)||(51681629-51681775)
chr1 (115-224)||(46729202-46729311)
chr1 (80-184)||(13792004-13792108)
chr1 (124-223)||(36564461-36564560)
chr1 (74-224)||(19547016-19547166)
chr1 (98-224)||(46895945-46896071)
chr1 (74-224)||(26297692-26297845)
chr1 (80-199)||(35508385-35508505)
chr1 (101-196)||(26765970-26766065)
chr1 (79-143)||(8462884-8462948)
chr1 (81-194)||(14890483-14890595)
chr1 (74-187)||(34582643-34582756)
chr1 (130-186)||(38294054-38294110)
chr1 (132-223)||(14885760-14885850)
chr1 (80-178)||(26533729-26533827)
chr1 (93-199)||(49338080-49338186)
chr1 (107-151)||(4521048-4521092)
chr1 (85-185)||(14892041-14892140)
chr1 (132-196)||(18038940-18039004)
chr1 (81-133)||(31499939-31499991)
[»] chr8 (23 HSPs)
chr8 (82-225)||(14237125-14237268)
chr8 (74-223)||(43238109-43238258)
chr8 (74-223)||(20142407-20142556)
chr8 (83-223)||(23984252-23984392)
chr8 (80-195)||(33285921-33286036)
chr8 (74-225)||(44042526-44042676)
chr8 (74-216)||(14855560-14855701)
chr8 (74-221)||(4166484-4166630)
chr8 (80-225)||(10565340-10565485)
chr8 (96-193)||(40464406-40464503)
chr8 (83-223)||(1162703-1162839)
chr8 (145-225)||(11078120-11078200)
chr8 (109-194)||(6904192-6904277)
chr8 (98-223)||(24457840-24457965)
chr8 (99-194)||(39691111-39691206)
chr8 (98-222)||(29487028-29487153)
chr8 (105-185)||(39312161-39312242)
chr8 (74-187)||(44254131-44254244)
chr8 (162-224)||(43120523-43120585)
chr8 (74-207)||(4507897-4508030)
chr8 (132-224)||(40914537-40914630)
chr8 (118-182)||(30674943-30675007)
chr8 (371-403)||(38008971-38009003)
[»] chr4 (17 HSPs)
chr4 (71-223)||(32892996-32893149)
chr4 (80-224)||(38949026-38949170)
chr4 (76-223)||(31655494-31655644)
chr4 (83-199)||(38380456-38380572)
chr4 (83-171)||(23133068-23133156)
chr4 (74-195)||(49011879-49012000)
chr4 (76-187)||(39804890-39805002)
chr4 (83-201)||(55861880-55861997)
chr4 (126-187)||(34469571-34469632)
chr4 (97-196)||(7388787-7388886)
chr4 (98-196)||(41370163-41370261)
chr4 (115-223)||(55855178-55855283)
chr4 (74-185)||(19652622-19652733)
chr4 (118-185)||(40062315-40062382)
chr4 (98-184)||(48097965-48098051)
chr4 (109-194)||(41956427-41956512)
chr4 (74-122)||(23135502-23135550)
[»] chr2 (16 HSPs)
chr2 (78-224)||(18734345-18734491)
chr2 (85-199)||(32438074-32438188)
chr2 (80-194)||(33962940-33963054)
chr2 (125-194)||(7933334-7933403)
chr2 (83-224)||(11580388-11580529)
chr2 (71-224)||(26271441-26271585)
chr2 (118-224)||(5403581-5403687)
chr2 (98-224)||(32770737-32770863)
chr2 (80-193)||(33634796-33634909)
chr2 (167-225)||(31452312-31452370)
chr2 (145-223)||(34233891-34233968)
chr2 (76-225)||(13538387-13538536)
chr2 (132-225)||(36260474-36260567)
chr2 (77-178)||(44195499-44195600)
chr2 (168-224)||(28572531-28572587)
chr2 (118-182)||(33617974-33618038)
[»] chr5 (16 HSPs)
chr5 (73-224)||(248428-248580)
chr5 (85-198)||(20125647-20125759)
chr5 (74-223)||(42877233-42877382)
chr5 (1-76)||(39234521-39234596)
chr5 (120-225)||(16980773-16980878)
chr5 (98-224)||(11010257-11010383)
chr5 (74-224)||(18988742-18988892)
chr5 (98-224)||(40944234-40944360)
chr5 (124-223)||(3628870-3628974)
chr5 (91-154)||(4857266-4857329)
chr5 (167-224)||(16667258-16667315)
chr5 (134-172)||(35506164-35506202)
chr5 (78-151)||(13978672-13978745)
chr5 (166-227)||(29558282-29558343)
chr5 (105-181)||(41583563-41583639)
chr5 (74-139)||(42265425-42265490)
[»] scaffold0633 (1 HSPs)
scaffold0633 (80-182)||(5013-5115)
[»] scaffold0027 (1 HSPs)
scaffold0027 (74-224)||(122432-122582)
[»] chr7 (14 HSPs)
chr7 (74-223)||(44319823-44319972)
chr7 (80-224)||(6771832-6771976)
chr7 (83-224)||(26200-26340)
chr7 (81-217)||(5495947-5496080)
chr7 (76-185)||(6775222-6775331)
chr7 (105-194)||(31902746-31902835)
chr7 (115-223)||(24934433-24934541)
chr7 (153-223)||(13040262-13040332)
chr7 (73-194)||(3298207-3298327)
chr7 (167-220)||(11914849-11914902)
chr7 (85-176)||(41898254-41898345)
chr7 (118-223)||(20397437-20397542)
chr7 (74-128)||(43211021-43211075)
chr7 (74-187)||(17883317-17883430)
[»] chr6 (6 HSPs)
chr6 (81-224)||(29988296-29988437)
chr6 (74-226)||(10570907-10571059)
chr6 (147-224)||(34530349-34530426)
chr6 (100-186)||(5678476-5678562)
chr6 (147-198)||(10245806-10245857)
chr6 (145-194)||(1479089-1479138)
[»] scaffold0172 (1 HSPs)
scaffold0172 (74-223)||(13454-13603)
[»] scaffold0036 (1 HSPs)
scaffold0036 (80-119)||(21296-21335)


Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Original strand, 49682072 - 49682646
Alignment:
Q  1 aaattggtacatggttaattcaattatgatgttatttatttcataatgctagtaatcctagttcatgtaattttaa-----------gggcactctttaa 89  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||           ||||  | |||||    
T  49682072 aaattggtgcatggttaattcaattatgatgttatttatttcataatgctagtagtcctagttcatgtaattttaatgtaattttaagggccatttttaa 49682171  T
Q  90 ggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtcc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49682172 ggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtcc 49682271  T
Q  190 ttaaaaaatgttcttaggacactcgttaacatttcttttgtttggaaatagttaaaatgccaaaaaa-gttgttttagttattttcataaatgaaacacc 288  Q
    |||||||||  |||||||||| |||||||||||||  |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  49682272 ttaaaaaatactcttaggacattcgttaacatttcccttgtttagaaatagttaaaatgccaaaaaaagttgttttagttattttcataaatgaaacacc 49682371  T
Q  289 tagttaatatttcatgttctctccgtcgaccgtcataatgtgtcatttcaaaagtcttatattttcttgttaacaagctaacgaacacatattttagaaa 388  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  49682372 tagttaatatttcatcttctctccgtcgaccatcataatgtgtcatttcaaaagtcttatattttcttgttaacaagctaacgaacacat--tttagaaa 49682469  T
Q  389 ataaaaattgaaaatgatttttgctgggcctaaatatcattgctgagacttttcttttgtttgaataacattgctgaagcttgagtttaattcattatga 488  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49682470 ataaaaattgaaaatgatttttgctgggcctaaatatcattgccgagacttttcttttgtttgaataacattgctgaagcttgagtttaattcattatga 49682569  T
Q  489 gatgctggggttcttagcatcagcaccaattatggttgaaattagaggatacagttgctaatattagcacacaggtt 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  49682570 gatgctggggttcttagcatcagcaccaattatggttgaaattagaggatacagatgctaatattagcacacaggtt 49682646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 74 - 195
Target Start/End: Original strand, 3973802 - 3973923
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    |||| ||||||||||||||||  ||||||| ||||||||||||||||||||| |||  |||||||||||| ||||| |||||||||||||| ||||||||    
T  3973802 taagagcactctttaaggtttcccaattaagaaattattccttaaaaaagttcaacgcttcaatttccgatgcattaaatgcacaattttccataaaaat 3973901  T
Q  174 ttactatttaaagtccttaaaa 195  Q
    ||||||||| ||||||||||||    
T  3973902 ttactatttcaagtccttaaaa 3973923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 74 - 224
Target Start/End: Complemental strand, 3996075 - 3995926
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    |||| ||||||||||||||||  |||||||  |||||||||||||||||||| |||  |||||||||||| ||||| |||||||||||||| ||||||||    
T  3996075 taagagcactctttaaggtttcccaattaagcaattattccttaaaaaagttcaacgcttcaatttccgatgcattaaatgcacaattttccataaaaat 3995976  T
Q  174 ttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    ||||||||| |||||||||||| | || |  ||| ||||||||||||||||    
T  3995975 ttactatttcaagtccttaaaaga-gtgcccagggcactcgttaacatttc 3995926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 4009603 - 4009482
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    |||| ||||||||||||||||  ||||||| ||||||||||||||||||||| |||  |||||||||||| ||||| |||||||||||||| | ||||||    
T  4009603 taagagcactctttaaggtttcccaattaagaaattattccttaaaaaagttcaacgcttcaatttccgatgcattaaatgcacaattttccacaaaaat 4009504  T
Q  174 ttactatttaaagtccttaaaa 195  Q
    ||||||||| | ||||||||||    
T  4009503 ttactatttcatgtccttaaaa 4009482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 21813256 - 21813124
Alignment:
Q  91 gtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtcct 190  Q
    |||| |||||||| ||||||||| || ||||||||||||| || || |||||| |||||||||||| ||||||| |||||||||||||||||||| ||||    
T  21813256 gtttctcaattaagaaattattcattgaaaaagtttaacactttaaattccgatgcattgaatgcataattttccataaaaatttactatttaaaatcct 21813157  T
Q  191 taaaaaatgttcttaggacactcgttaacattt 223  Q
    |||| | ||  |||||||||||| |||||||||    
T  21813156 taaagagtgcccttaggacactcattaacattt 21813124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 32606493 - 32606385
Alignment:
Q  80 cactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttacta 179  Q
    |||||| |||||||||||||||||||||||||   || |||||  ||||||||||||||||||| |||||||||||| ||||||  ||||||||||| ||    
T  32606493 cactctataaggtttttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcattgaatgcataatttttcataaaaatttatta 32606394  T
Q  180 tttaaagtc 188  Q
    |||||||||    
T  32606393 tttaaagtc 32606385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 39144981 - 39145107
Alignment:
Q  98 aattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaa 197  Q
    |||||| ||||| ||  |||||||| ||||||| |||||||||||| |||||||||||| |||||||||| |||||||| ||||||||||| ||||| |     
T  39144981 aattaagaaattgttttttaaaaaattttaacacttcaatttccgatgcattgaatgcataattttctat-aaaatttattatttaaagtctttaaagag 39145079  T
Q  198 tgttcttaggacactcgttaacatttct 225  Q
    ||| |||| ||||||| ||| |||||||    
T  39145080 tgtccttaagacactcattagcatttct 39145107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 224
Target Start/End: Original strand, 34285341 - 34285485
Alignment:
Q  76 agggcactctttaaggtttttcaattaaaaaat-tattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatt 174  Q
    |||||||||||||||| ||  |||||||||||| ||||| |||||||||||||||| ||||| ||||     ||| ||||||||| ||| ||||||||||    
T  34285341 agggcactctttaaggcttcccaattaaaaaatatattctttaaaaaagtttaacacttcaacttcc-----attaaatgcacaaatttttataaaaatt 34285435  T
Q  175 tactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    |||||||||||||  ||||| | |   |||||  ||||||||||||||||    
T  34285436 tactatttaaagttattaaagagtacccttagagcactcgttaacatttc 34285485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 7278282 - 7278163
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    |||||||||||||||||| |  |||||||  ||| ||||| ||| ||||| |||| ||||| |||||| | ||||| ||||||||| |||| |||||||     
T  7278282 taagggcactctttaaggatactcaattacgaaactattcattagaaaagcttaatatttcgatttccaatgcattcaatgcacaagtttcgataaaaac 7278183  T
Q  174 ttactatttaaagtccttaa 193  Q
    |||||||||||||| |||||    
T  7278182 ttactatttaaagttcttaa 7278163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 31294370 - 31294447
Alignment:
Q  85 tttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattt 162  Q
    |||||||||||  |||||| ||||||||| || ||||||||||||| || ||||||||| ||||||||||||| ||||    
T  31294370 tttaaggttttctaattaagaaattattctttgaaaaagtttaacactttaatttccgatgcattgaatgcaccattt 31294447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 194
Target Start/End: Original strand, 29212701 - 29212809
Alignment:
Q  86 ttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaa 185  Q
    |||||| |||| |||||| ||| ||||| || ||||||| |||   ||||||||  || | ||||||||||||| |||||||||||||||| ||| ||||    
T  29212701 ttaaggattttaaattaagaaactattcattgaaaaagtctaatgcttcaatttatgatgtattgaatgcacaagtttctataaaaatttaatatctaaa 29212800  T
Q  186 gtccttaaa 194  Q
    ||| |||||    
T  29212801 gtctttaaa 29212809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 1996154 - 1996097
Alignment:
Q  166 ataaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacattt 223  Q
    ||||||||||||||||||||||||||||| ||| |||||| ||||  ||||| |||||    
T  1996154 ataaaaatttactatttaaagtccttaaagaatattcttaagacatccgttagcattt 1996097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 25845942 - 25846019
Alignment:
Q  148 ttgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttct 225  Q
    |||||||||||| ||| |||||||| ||||||| ||||||| ||||| | ||| |||| |||| || |||||||||||    
T  25845942 ttgaatgcacaagtttatataaaaacttactatctaaagtctttaaagagtgtccttatgacattcattaacatttct 25846019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 29484942 - 29484833
Alignment:
Q  85 tttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctata-aaaatttactattta 183  Q
    |||||| ||||  |||||| ||||||||| |||||||| | ||||| |||||||| | |   ||||||| |||||||||||||| ||||  |||||||||    
T  29484942 tttaagattttctaattaagaaattattctttaaaaaaatctaacacttcaattttcaataaattgaatacacaattttctataaaaaaaatactattta 29484843  T
Q  184 aagtccttaa 193  Q
    |||| |||||    
T  29484842 aagtacttaa 29484833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 11465736 - 11465692
Alignment:
Q  80 cactctttaaggtttttcaattaaaaaattattccttaaaaaagt 124  Q
    |||||||||||| |||| ||| |||||||||||| ||||||||||    
T  11465736 cactctttaaggatttttaataaaaaaattattctttaaaaaagt 11465692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 6e-51; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 14758548 - 14758698
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    |||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  ||||||||    
T  14758548 taagggcactctttaaagttttccaattaagaaattattccttaaaaaagtttaacatttcaattttcgatgcattgaatgcacaatttttcataaaaat 14758647  T
Q  174 ttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    ||||||||||||||||||||| | ||| |||||  ||||||||||||||||    
T  14758648 ttactatttaaagtccttaaagagtgtccttagagcactcgttaacatttc 14758698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 44920204 - 44920358
Alignment:
Q  71 ttttaagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaa 170  Q
    ||||||||||| |||||||||||| |||||||| ||||||||| |||||||||||||||| ||||||||  || |||||||||||||||||||| |||||    
T  44920204 ttttaagggcattctttaaggtttctcaattaagaaattattcattaaaaaagtttaacacttcaatttatgatgcattgaatgcacaattttccataaa 44920303  T
Q  171 aatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttct 225  Q
    |||||||||||| ||||||||||||| ||  |||||| |||||||||||||||||    
T  44920304 aatttactatttcaagtccttaaaaagtgcccttagggcactcgttaacatttct 44920358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 41649881 - 41649983
Alignment:
Q  80 cactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttacta 179  Q
    |||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||| ||||||||||||||    
T  41649881 cactttttaaggtttcccaattaaaaaattattccttaaaaaagtttaacatttcaatttcccatgcattgaatgcataattttccataaaaatttacta 41649980  T
Q  180 ttt 182  Q
    |||    
T  41649981 ttt 41649983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 91 - 200
Target Start/End: Original strand, 30529360 - 30529469
Alignment:
Q  91 gtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtcct 190  Q
    ||||||||||||| ||||||||| || ||||| ||||||| ||||||||| || ||||| |||||||||||||| |||||||||||||||||||||||||    
T  30529360 gtttttcaattaagaaattattctttgaaaaaatttaacacttcaatttctgatgcattaaatgcacaattttccataaaaatttactatttaaagtcct 30529459  T
Q  191 taaaaaatgt 200  Q
    |||| |||||    
T  30529460 taaagaatgt 30529469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 74 - 223
Target Start/End: Original strand, 51681629 - 51681775
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    |||||||||||||||||||||  ||||||| ||||||||| || ||||||||||||| || ||||||||  |||||||||| ||||||||| ||  ||||    
T  51681629 taagggcactctttaaggtttcccaattaagaaattattctttgaaaaagtttaacactttaatttccggtgcattgaatgtacaattttccat--aaat 51681726  T
Q  174 ttactatttaaagtccttaaaaaatgttcttaggacactcgttaacattt 223  Q
    ||| |||||| ||| |||||||| ||  ||||| ||||||||||||||||    
T  51681727 ttattatttagagttcttaaaaagtg-ccttagaacactcgttaacattt 51681775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 46729202 - 46729311
Alignment:
Q  115 ttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaatgttcttaggacactcg 214  Q
    ||||||||| |||||| ||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | ||   ||||| ||||||    
T  46729202 ttaaaaaagattaacacttcaaattccgatgcattgaatgcacaattttccataaaaatttactatttaaagtccttaaagagtgcctttagggcactcg 46729301  T
Q  215 ttaacatttc 224  Q
    |||| |||||    
T  46729302 ttaatatttc 46729311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 13792108 - 13792004
Alignment:
Q  80 cactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttacta 179  Q
    ||||||||||||||||| |||||||||||||||  || ||||||||||||| |||||||   || ||||| ||||||||||||  |||||||||||||||    
T  13792108 cactctttaaggttttttaattaaaaaattatttttttaaaaagtttaacacttcaattattgatgcatttaatgcacaatttcttataaaaatttacta 13792009  T
Q  180 tttaa 184  Q
    |||||    
T  13792008 tttaa 13792004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 36564560 - 36564461
Alignment:
Q  124 tttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacattt 223  Q
    ||||||| |||||||||  |||||||||||||||||||||  |||||| |||||||||||||||||||||| | || ||||||| |||||| || |||||    
T  36564560 tttaacacttcaatttctaaagcattgaatgcacaatttttcataaaattttactatttaaagtccttaaagagtgctcttagggcactcgatagcattt 36564461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 74 - 224
Target Start/End: Complemental strand, 19547166 - 19547016
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    |||||||| ||||||||| ||  ||| ||| ||||||||| || |||| ||  || | ||||||| |||| ||||||||||||||| ||||||||||||     
T  19547166 taagggcattctttaaggattcccaagtaagaaattattcattgaaaatgtccaatacttcaattcccgatgcattgaatgcacaagtttctataaaaac 19547067  T
Q  174 ttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    ||||||| ||||||||||||| | ||  |||||| ||||| ||| ||||||    
T  19547066 ttactatataaagtccttaaagagtgcccttagggcactcattagcatttc 19547016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 46895945 - 46896071
Alignment:
Q  98 aattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaa 197  Q
    |||||| ||||||||  || ||||||| ||| |||||||||||||| |||||||||||| || |||||||||||| ||||||| |||||||| |||| ||    
T  46895945 aattaagaaattatttattgaaaaagtctaatatttcaatttccgatgcattgaatgcataaatttctataaaaacttactatctaaagtccgtaaagaa 46896044  T
Q  198 tgttcttaggacactcgttaacatttc 224  Q
    ||  ||||  | |||| ||||||||||    
T  46896045 tgaccttaaaaaactcattaacatttc 46896071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 26297692 - 26297845
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaa---tgcacaattttctataaa 170  Q
    |||||||||||||||||  ||  ||||||  ||| ||||| || |||||| |||| |||||||||||||| |||| |||   ||||||| ||||||||||    
T  26297692 taagggcactctttaagtattcccaattatgaaactattcattgaaaaagcttaatatttcaatttccgatgcatagaagaatgcacaagtttctataaa 26297791  T
Q  171 aatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    || ||||||| ||||||||||||| ||||  | |||| ||||| ||| ||||||    
T  26297792 aacttactatctaaagtccttaaagaatgcccctagggcactcattagcatttc 26297845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 199
Target Start/End: Original strand, 35508385 - 35508505
Alignment:
Q  80 cactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaa-tgcacaattttctataaaaatttact 178  Q
    ||||||||| ||||| |||||||| ||||||||| || ||||| ||||||| |||||||||| | ||||| || || |||||||   ||||||||||| |    
T  35508385 cactctttatggtttctcaattaagaaattattctttgaaaaaatttaacacttcaatttccaatgcatttaaatgtacaatttctcataaaaatttatt 35508484  T
Q  179 atttaaagtccttaaaaaatg 199  Q
    |||||||||| ||||| ||||    
T  35508485 atttaaagtctttaaagaatg 35508505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 26765970 - 26766065
Alignment:
Q  101 taaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaa 196  Q
    ||||||| ||||| || ||||||||||| ||||||||||| || | |||||||||| || ||| |||| ||| ||||||| |||||||||||||||    
T  26765970 taaaaaactattcattgaaaaagtttaatatttcaatttctgatggattgaatgcataagtttttatataaacttactatctaaagtccttaaaaa 26766065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 8462884 - 8462948
Alignment:
Q  79 gcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccga 143  Q
    |||||||||||| |||||||| ||||||||||||  || ||||||||||||| ||||||||||||    
T  8462884 gcactctttaagatttttcaactaaaaaattattatttgaaaaagtttaacacttcaatttccga 8462948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 14890595 - 14890483
Alignment:
Q  81 actctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactat 180  Q
    ||||||||||| || | |||||||||||||||  || |||||  |||| | ||||||||||||  |||||||||||||| |||||||  |||||||||||    
T  14890595 actctttaaggattcttaattaaaaaattattaattgaaaaaacttaatacttcaatttccgatacattgaatgcacaaatttctat-caaatttactat 14890497  T
Q  181 ttaaagtccttaaa 194  Q
     |||| | ||||||    
T  14890496 ctaaaattcttaaa 14890483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 187
Target Start/End: Original strand, 34582643 - 34582756
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    |||| |||||||| |||| |||| ||||||||||||||||  | ||||||| |||   ||||||||| || |||||||||||| || |||  |||||||     
T  34582643 taagagcactcttcaaggattttaaattaaaaaattattcaatgaaaaagtataatgcttcaatttctgatgcattgaatgcataagttttcataaaaac 34582742  T
Q  174 ttactatttaaagt 187  Q
    ||||||| ||||||    
T  34582743 ttactatctaaagt 34582756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 38294054 - 38294110
Alignment:
Q  130 atttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaag 186  Q
    |||| ||||||| | ||||||||||||||| |||||||||||| |||||||||||||    
T  38294054 attttaatttccaatgcattgaatgcacaagtttctataaaaacttactatttaaag 38294110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 223
Target Start/End: Complemental strand, 14885850 - 14885760
Alignment:
Q  132 ttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacattt 223  Q
    ||||||||| || |||| |||||||||| ||||||| |||||||| |||||||||| |||||  | ||| ||||| |||||| ||| |||||    
T  14885850 ttcaatttctgatgcatcgaatgcacaaatttctat-aaaatttattatttaaagttcttaatgagtgtccttagaacactccttatcattt 14885760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 26533827 - 26533729
Alignment:
Q  80 cactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttact 178  Q
    |||| ||||||| || |||||||| |||||||   || ||||||| |||| ||||||||||||  |  || ||||||||| |||| |||||||||||||    
T  26533827 cactttttaaggattctcaattaagaaattatcaattgaaaaagtctaacgtttcaatttccgctgttttaaatgcacaagtttccataaaaatttact 26533729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 49338080 - 49338186
Alignment:
Q  93 ttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtcctta 192  Q
    |||| |||||||||||||||| |||||||| |||||  ||||||||| |||   ||  |||| |||| |||  ||||||||||||||| |||| || |||    
T  49338080 tttttaattaaaaaattattcattaaaaaaatttaatgtttcaattttcgatatataaaatggacaaattttcataaaaatttactatctaaattcttta 49338179  T
Q  193 aaaaatg 199  Q
    || ||||    
T  49338180 aagaatg 49338186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 4521092 - 4521048
Alignment:
Q  107 attattccttaaaaaagtttaacatttcaatttccgaagcattga 151  Q
    ||||||| ||||||||||| ||||||||||||||| | |||||||    
T  4521092 attattctttaaaaaagttaaacatttcaatttccaatgcattga 4521048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 14892140 - 14892041
Alignment:
Q  85 tttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaa 184  Q
    ||||||| || | |||||||||||||||  || |||||  |||| | ||||||||||||  |||||||| ||||| |||||||  ||||||||||| |||    
T  14892140 tttaaggattcttaattaaaaaattattaattgaaaaaacttaatacttcaatttccgatacattgaatacacaaatttctat-caaatttactatctaa 14892042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 18038940 - 18039004
Alignment:
Q  132 ttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaa 196  Q
    |||||||||||| ||||||||| ||||| |||  ||||||| ||| ||| ||||||| |||||||    
T  18038940 ttcaatttccgatgcattgaatacacaaattttcataaaaaattattatctaaagtctttaaaaa 18039004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 31499991 - 31499939
Alignment:
Q  81 actctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacattt 133  Q
    ||||||||||| |||||| ||| ||||||||||  |||||||||| |||||||    
T  31499991 actctttaaggattttcagttagaaaattattcactaaaaaagttaaacattt 31499939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 14237125 - 14237268
Alignment:
Q  82 ctctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatt 181  Q
    ||||||||| ||||||||||||||||||||||| || |||||||||||| |||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  14237125 ctctttaagatttttcaattaaaaaattattccatataaaagtttaacacttcaatttccgatgcattaaatgcacaattttccataaaaatttactatt 14237224  T
Q  182 taaagtccttaaaaaatgttcttaggacactcgttaacatttct 225  Q
    ||||||||||||| |||| ||| ||| |||||||||| ||||||    
T  14237225 taaagtccttaaagaatgctctaagggcactcgttaatatttct 14237268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 43238258 - 43238109
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||||| |||| | ||||||| ||||||||    
T  43238258 taagggtactctttaaggtttttcaattaagaaattattccttaaaaaagtttaacacttcaattttcgatgcattaaatgtagaattttccataaaaat 43238159  T
Q  174 ttactatttaaagtccttaaaaaatgttcttaggacactcgttaacattt 223  Q
    |||||||||||||| |||||| | ||  |||||| |||||||||||||||    
T  43238158 ttactatttaaagttcttaaagagtgcacttagggcactcgttaacattt 43238109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 20142556 - 20142407
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    ||||| ||||||||||||| |||||||||| ||||||||  || ||||||||||||| || ||||| ||| ||||| |||||||||||| | ||||||||    
T  20142556 taaggacactctttaaggtatttcaattaagaaattatttttttaaaaagtttaacactttaattttcgatgcattaaatgcacaatttcccataaaaat 20142457  T
Q  174 ttactatttaaagtccttaaaaaatgttcttaggacactcgttaacattt 223  Q
    ||| ||||||||||||||||| |||| ||| || | ||||||||||||||    
T  20142456 ttattatttaaagtccttaaataatgctctaagaatactcgttaacattt 20142407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 23984252 - 23984392
Alignment:
Q  83 tctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactattt 182  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||||||||  |||||||  ||  || |||| ||||||||||  |||||||||||||||||    
T  23984252 tctttaaagtttttcaattaagaaattattctttaaaaaagtttaacacctcaatttttgatacactgaaagcacaatttttcataaaaatttactattt 23984351  T
Q  183 aaagtccttaaaaaatgttcttaggacactcgttaacattt 223  Q
    ||| |||||||  | |||||||| ||||||||||| |||||    
T  23984352 aaaatccttaaggagtgttcttaagacactcgttagcattt 23984392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 33286036 - 33285921
Alignment:
Q  80 cactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttacta 179  Q
    ||||||||||||||| |||||||| ||||||||  || ||||| |||||||||||||||| ||| | ||| ||| |||||||||  ||||||||||||||    
T  33286036 cactctttaaggtttatcaattaagaaattattttttgaaaaaatttaacatttcaattttcgatgtattaaatacacaatttttcataaaaatttacta 33285937  T
Q  180 tttaaagtccttaaaa 195  Q
    ||||||||||||||||    
T  33285936 tttaaagtccttaaaa 33285921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 74 - 225
Target Start/End: Original strand, 44042526 - 44042676
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    ||||| |||||||||||| ||   |||||| ||| ||||| || |||||||| || | |||||||||| | ||||||||||||||| ||||||||||||     
T  44042526 taaggacactctttaaggattcataattaagaaactattcattgaaaaagttcaatacttcaatttccaatgcattgaatgcacaaatttctataaaaac 44042625  T
Q  174 ttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttct 225  Q
    |||||||||||| || ||||||||| | ||||  ||||| ||||||||||||    
T  44042626 ttactatttaaaatctttaaaaaatatcctta-aacacttgttaacatttct 44042676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 14855701 - 14855560
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    ||||| |||| ||||||||||  | ||||||||||||||| || ||||||||||||| |||||||| ||| ||||  |||| ||| ||||  ||||||||    
T  14855701 taaggacactttttaaggtttccctattaaaaaattattctttgaaaaagtttaacacttcaatttacgatgcatcaaatggacactttttcataaaaat 14855602  T
Q  174 ttactatttaaagtccttaaaaaatgttcttaggacactcgtt 216  Q
    ||| ||||||||||| ||||| | ||||| || ||||||||||    
T  14855601 ttattatttaaagtctttaaagagtgttc-tatgacactcgtt 14855560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 74 - 221
Target Start/End: Original strand, 4166484 - 4166630
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    |||||||||||||||||| ||   ||| || ||||||||| || |||||||| || |||||||||||| |  |||||||||||||| |||| |||||||     
T  4166484 taagggcactctttaaggattcataatcaagaaattattcattgaaaaagttcaatatttcaatttccaatacattgaatgcacaagtttccataaaaac 4166583  T
Q  174 ttactatttaaagtccttaaaaaatgttcttaggacactcgttaacat 221  Q
    ||  ||| ||||||| ||||||| || ||||| | |||||||||||||    
T  4166584 tttatatctaaagtctttaaaaagtg-tcttacggcactcgttaacat 4166630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 80 - 225
Target Start/End: Original strand, 10565340 - 10565485
Alignment:
Q  80 cactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttacta 179  Q
    |||||||||||  || | |||||| ||| ||||| || ||||||| ||| | || |||||  || | ||||||||||||| |||| ||||||||||||||    
T  10565340 cactctttaagaattctaaattaagaaactattcattgaaaaagtctaatactttaatttttgatgtattgaatgcacaaatttccataaaaatttacta 10565439  T
Q  180 tttaaagtccttaaaaaatgttcttaggacactcgttaacatttct 225  Q
    | ||||||| ||||| |||  ||||| |||||| ||||||||||||    
T  10565440 tctaaagtctttaaataatactcttaagacactggttaacatttct 10565485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 40464503 - 40464406
Alignment:
Q  96 tcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaa 193  Q
    |||||||||||| ||||| || |||| |||||| |||||||||| ||| |  |||||||||||| || | |||||||||||||||| |||||||||||    
T  40464503 tcaattaaaaaactattcattgaaaatgtttaatatttcaattttcgatgttttgaatgcacaagttaccataaaaatttactattcaaagtccttaa 40464406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 1162839 - 1162703
Alignment:
Q  83 tctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactattt 182  Q
    ||||||||| |||| |||||| |||| |||  |||||||||| ||| | |||| ||| | |  |||| ||||||||||||| ||||||||||||  |       
T  1162839 tctttaaggatttttaattaagaaat-atttattaaaaaagtctaatacttcacttttccatacattaaatgcacaattttttataaaaatttatca--- 1162744  T
Q  183 aaagtccttaaaaaatgttcttaggacactcgttaacattt 223  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  1162743 aaagtccttaaaaaatattcttaggacactcgttagcattt 1162703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 11078120 - 11078200
Alignment:
Q  145 gcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttct 225  Q
    |||||||||||| ||||||  |||||||||||||||||| ||| |||||||| |||  ||| ||||||||||| |||||||    
T  11078120 gcattgaatgcataatttttcataaaaatttactatttagagttcttaaaaagtgtcattacgacactcgttagcatttct 11078200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 6904192 - 6904277
Alignment:
Q  109 tattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaa 194  Q
    ||||| || |||||||||||   |||||||||||| |||||||| |||||| |||| ||||||| ||||||| ||||||| |||||    
T  6904192 tattcattgaaaaagtttaatgcttcaatttccgatgcattgaacgcacaagtttccataaaaaattactatctaaagtctttaaa 6904277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 24457840 - 24457965
Alignment:
Q  98 aattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaa 197  Q
    |||||||||| ||||| || ||||||| |||  ||||||||||  | ||||| || |||||| |||  ||||||| ||||||||||||||  ||||||||    
T  24457840 aattaaaaaactattcattgaaaaagtctaatgtttcaatttcaaatgcattaaaagcacaagttttcataaaaacttactatttaaagtttttaaaaaa 24457939  T
Q  198 tgttcttaggacactcgttaacattt 223  Q
    ||| || |||| | | ||||||||||    
T  24457940 tgtcctaaggataatagttaacattt 24457965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 39691206 - 39691111
Alignment:
Q  99 attaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaa 194  Q
    ||||||||||||||| ||||||||||  || | |||||||| | | ||||||||| ||||| |||  ||||||| |||||||||||  ||||||||    
T  39691206 attaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaatacacaaattttcataaaaaattactatttaagatccttaaa 39691111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 98 - 222
Target Start/End: Complemental strand, 29487153 - 29487028
Alignment:
Q  98 aattaaaaaattattccttaaaaaagtttaac-atttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaa 196  Q
    |||||| ||||||||| ||||||||||||||  | |||||||| | | ||||| ||| ||||  ||| |||||||| |||||| |||||  |||||| ||    
T  29487153 aattaagaaattattctttaaaaaagtttaaatagttcaattttcaatgcatttaatacacatatttttataaaaagttactacttaaaacccttaagaa 29487054  T
Q  197 atgttcttaggacactcgttaacatt 222  Q
     |||||  |||| |||||||||||||    
T  29487053 gtgttcaaaggaaactcgttaacatt 29487028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 39312242 - 39312161
Alignment:
Q  105 aaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatt-tactatttaaa 185  Q
    ||||||||| || ||||||||||| | |||||||||||| |||||||||    || |||||||||||||| |||||||||||    
T  39312242 aaattattcattgaaaaagtttaatacttcaatttccgatgcattgaattgctaagtttctataaaaattgtactatttaaa 39312161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 187
Target Start/End: Complemental strand, 44254244 - 44254131
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    |||||||||||||||||| |||  ||| || ||||| ||||||||||||||  || | |||||||||| | ||||||| | || || |||  | |||||     
T  44254244 taagggcactctttaaggatttctaataaagaaattcttccttaaaaaagtcaaaaacttcaatttccaatgcattgatttcataaattttgacaaaaac 44254145  T
Q  174 ttactatttaaagt 187  Q
    ||||||||||||||    
T  44254144 ttactatttaaagt 44254131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 43120523 - 43120585
Alignment:
Q  162 ttctataaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    ||||||||||| ||||||||||||||  ||||||| |||  |||||| | |||||||||||||    
T  43120523 ttctataaaaacttactatttaaagttgttaaaaagtgtcattaggaaattcgttaacatttc 43120585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 207
Target Start/End: Complemental strand, 4508030 - 4507897
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    |||||||||||||||||| |  |||||||| ||| ||||  || |||||   | | ||||||||||| || ||||| |||||  || |||| |||||||     
T  4508030 taagggcactctttaaggatagtcaattaagaaactatttattgaaaaaacatcatatttcaatttctgatgcattaaatgcgtaagtttccataaaaac 4507931  T
Q  174 ttactatttaaagtccttaaaaaatgttcttagg 207  Q
    |||| || |||||| |||||||| ||| ||||||    
T  4507930 ttaccatctaaagttcttaaaaagtgtccttagg 4507897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 40914630 - 40914537
Alignment:
Q  132 ttcaatttccgaagcattgaatgcacaattttctataaaaatttactat-ttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    |||||||| | | ||||| ||| ||||| |||  ||||||||||||||| || ||||||||||| | |||||||| |  |||||||||||||||    
T  40914630 ttcaattttcaatgcattaaattcacaaattttcataaaaatttactatctttaagtccttaaagagtgttcttaaggtactcgttaacatttc 40914537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 30675007 - 30674943
Alignment:
Q  118 aaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactattt 182  Q
    |||||||| ||||||||||||| | | ||||||||||||||  |||| ||||||  |||||||||    
T  30675007 aaaaagttaaacatttcaatttacaatgcattgaatgcacatatttccataaaatattactattt 30674943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 38008971 - 38009003
Alignment:
Q  371 gaacacatattttagaaaataaaaattgaaaat 403  Q
    |||||||||||||||||||||||||| ||||||    
T  38008971 gaacacatattttagaaaataaaaatagaaaat 38009003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 71 - 223
Target Start/End: Original strand, 32892996 - 32893149
Alignment:
Q  71 ttttaagggcactcttt-aaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataa 169  Q
    |||||||| |||||||| |||||||||||||||| || |||||  | ||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  32892996 ttttaaggacactcttttaaggtttttcaattaagaatttatttttaaaaaaagtttaacatttcaattttcgatgcattgaatgcacaattttctataa 32893095  T
Q  170 aaatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacattt 223  Q
    || ||||||||||||||||||| ||||||||| |||||||| |||||| |||||    
T  32893096 aagtttactatttaaagtcctttaaaaatgttattaggacattcgttagcattt 32893149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 38949170 - 38949026
Alignment:
Q  80 cactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttacta 179  Q
    ||||||||||| |||| |||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||||||||||||||  ||||||||||||||    
T  38949170 cactctttaagattttccaattaaaaaattatttcttaaaaaaatttaacacttcaatttccgatgcattgaatgcacaatttttcataaaaatttacta 38949071  T
Q  180 tttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    ||| ||||||||||| | ||  ||||  |||||||||||||||||    
T  38949070 tttcaagtccttaaagagtgcccttaaaacactcgttaacatttc 38949026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 76 - 223
Target Start/End: Original strand, 31655494 - 31655644
Alignment:
Q  76 agggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataa---aaa 172  Q
    |||||||| ||||||||||  ||||||||||||||||| |||||||||||||||| |||||| ||||| | |||||||||||||||||||||||          
T  31655494 agggcactttttaaggtttcccaattaaaaaattattctttaaaaaagtttaacacttcaatatccgatgtattgaatgcacaattttctataatttttt 31655593  T
Q  173 tttactatttaaagtccttaaaaaatgttcttaggacactcgttaacattt 223  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||    
T  31655594 tttactatttaaagtccttaatcggtgttcttaggacactcgttaacattt 31655644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 38380456 - 38380572
Alignment:
Q  83 tctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactattt 182  Q
    ||||||| ||||  ||||||| ||||| ||| || ||||||||||||| |||||||||||||||||| |||||| ||||||| |||||||||||||||||    
T  38380456 tctttaaagtttcccaattaataaatttttctttgaaaaagtttaacacttcaatttccgaagcattaaatgcataattttccataaaaatttactattt 38380555  T
Q  183 aaagtccttaaaaaatg 199  Q
    |||||||||||| ||||    
T  38380556 aaagtccttaaagaatg 38380572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 23133156 - 23133068
Alignment:
Q  83 tctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaa 171  Q
    |||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||    
T  23133156 tctttatggtttctcaattaagaaattattccttaaaaaagtttaacacttcaatttccgatgcattgaatacacaattttctataaaa 23133068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 49012000 - 49011879
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    |||| ||||||||||||| |||| ||| || ||  ||||| |||||||||||||| | |||||||| ||| ||||| ||||||||| |||  | |||||     
T  49012000 taagtgcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcacaaaaac 49011901  T
Q  174 ttactatttaaagtccttaaaa 195  Q
    ||||||||||||||||||||||    
T  49011900 ttactatttaaagtccttaaaa 49011879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 76 - 187
Target Start/End: Complemental strand, 39805002 - 39804890
Alignment:
Q  76 agggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctat-aaaaatt 174  Q
    |||| ||||||||||||||| ||||||||||||||||  || ||||| ||||||| ||||||||  ||  |||| |||||||||||||  || |||||||    
T  39805002 agggtactctttaaggttttccaattaaaaaattattatttgaaaaaatttaacacttcaatttttgatacattaaatgcacaatttttcataaaaaatt 39804903  T
Q  175 tactatttaaagt 187  Q
    |||||||||||||    
T  39804902 tactatttaaagt 39804890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 55861880 - 55861997
Alignment:
Q  83 tctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactattt 182  Q
    ||||||||||||||||| |||||||| |||| ||| ||||| ||||| |||||||||| ||  || ||||  ||||| ||||| |||||||||| |||||    
T  55861880 tctttaaggtttttcaaataaaaaatgattctttagaaaagattaacttttcaatttctgattcactgaa-acacaactttctgtaaaaatttattattt 55861978  T
Q  183 aaagtccttaaaaaatgtt 201  Q
    ||| || ||||| ||||||    
T  55861979 aaaatctttaaagaatgtt 55861997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 34469632 - 34469571
Alignment:
Q  126 taacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagt 187  Q
    |||||||||||||||||| ||||| |||||||||||||  ||||||||||| ||||||||||    
T  34469632 taacatttcaatttccgatgcattaaatgcacaatttttcataaaaatttattatttaaagt 34469571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 7388787 - 7388886
Alignment:
Q  97 caattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaa 196  Q
    ||||||| ||| ||| | || ||||||| |||  || |||||||||| ||||| ||||||||| |||| ||||||||||||||| |||||| ||||||||    
T  7388787 caattaagaaaatatccattgaaaaagtctaatgttccaatttccgatgcattaaatgcacaagtttccataaaaatttactatctaaagttcttaaaaa 7388886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 98 - 196
Target Start/End: Complemental strand, 41370261 - 41370163
Alignment:
Q  98 aattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaa 196  Q
    |||||| |||||||| || ||||||||| || |||||||||| | | ||||||| | ||||| |||  ||||||| |||||||| ||||||||||||||    
T  41370261 aattaagaaattatttctcaaaaaagttaaatatttcaattttcaatgcattgattacacaaattttcataaaaacttactattcaaagtccttaaaaa 41370163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 55855178 - 55855283
Alignment:
Q  115 ttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaatgttcttaggacactcg 214  Q
    |||||||||||||||| |||||||| |||  |||| ||| ||| |||||  ||||||||||| ||||||||||||||||| ||| |||||| ||||  ||    
T  55855178 ttaaaaaagtttaacacttcaattttcga--cattaaat-cacgatttttcataaaaatttattatttaaagtccttaaagaatattcttaagacatccg 55855274  T
Q  215 ttaacattt 223  Q
    ||| |||||    
T  55855275 ttagcattt 55855283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 185
Target Start/End: Original strand, 19652622 - 19652733
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    |||| |||||||||||||||| | |||||| | ||||||| || |||| || ||| | || ||||||| | ||||||||||||||| |||  |||||||     
T  19652622 taagagcactctttaaggtttctaaattaagatattattcattgaaaatgtataatagtttaatttccaatgcattgaatgcacaaattttcataaaaac 19652721  T
Q  174 ttactatttaaa 185  Q
    ||||||| ||||    
T  19652722 ttactatctaaa 19652733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 40062315 - 40062382
Alignment:
Q  118 aaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaa 185  Q
    |||||||| || |||||| ||||| | ||||||||||||| | |||||||||||||||| ||||||||    
T  40062315 aaaaagttcaatatttcattttccaatgcattgaatgcacgaatttctataaaaatttattatttaaa 40062382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 48097965 - 48098051
Alignment:
Q  98 aattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaa 184  Q
    |||||| ||||||||| ||||||||||| || | |||||||||| |  |||| ||| ||||  ||| |||||||| |||||||||||    
T  48097965 aattaagaaattattctttaaaaaagttaaatagttcaatttccaatacattaaatacacatgtttttataaaaagttactatttaa 48098051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 41956512 - 41956427
Alignment:
Q  109 tattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaa 194  Q
    ||||| |||| ||| || || |||||||||| | | ||||||| | |||||||||  |||||||||||||||| |||| |||||||    
T  41956512 tattctttaagaaatttaaatatttcaattttcaacgcattgattacacaatttttcataaaaatttactattaaaagcccttaaa 41956427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 23135550 - 23135502
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaa 122  Q
    |||| ||||||||||||| |||  ||| |||||||||||||||||||||    
T  23135550 taagtgcactctttaaggatttctaataaaaaaattattccttaaaaaa 23135502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 78 - 224
Target Start/End: Original strand, 18734345 - 18734491
Alignment:
Q  78 ggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttac 177  Q
    |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||  ||||||||||||    
T  18734345 ggcactctctaaggtttctcaattaagaaattattccttaaaaaagtttaacacttcaatttccgatacattgaatgcacaatttttcataaaaatttac 18734444  T
Q  178 tatttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    ||||| ||||||||| | ||||| |||||| ||||| | ||||||||    
T  18734445 tatttcaagtccttagagaatgtccttagggcactcataaacatttc 18734491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 32438188 - 32438074
Alignment:
Q  85 tttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaa 184  Q
    ||||||||||| ||||||||||||||||  || |||| |||||||| |||||||||||| ||||| |||||||||||||| |||||||||||||||||||    
T  32438188 tttaaggttttccaattaaaaaattattatttgaaaaggtttaacacttcaatttccgatgcattaaatgcacaattttccataaaaatttactatttaa 32438089  T
Q  185 agtccttaaaaaatg 199  Q
    |||||||||| ||||    
T  32438088 agtccttaaagaatg 32438074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 33963054 - 33962940
Alignment:
Q  80 cactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttacta 179  Q
    |||||||||| ||||| ||||||| ||||||||| |||||||||||||||| |||||||| | | |||||||||||||||||||  ||||||||||| ||    
T  33963054 cactctttaaagttttccaattaagaaattattctttaaaaaagtttaacacttcaattttcaatgcattgaatgcacaatttttcataaaaatttatta 33962955  T
Q  180 tttaaagtccttaaa 194  Q
    |||||||||||||||    
T  33962954 tttaaagtccttaaa 33962940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 7933334 - 7933403
Alignment:
Q  125 ttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaa 194  Q
    |||||| |||||||||||| |||||||||||| ||||||  |||||||||||||||||||||| ||||||    
T  7933334 ttaacacttcaatttccgatgcattgaatgcataatttttcataaaaatttactatttaaagtacttaaa 7933403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 224
Target Start/End: Complemental strand, 11580529 - 11580388
Alignment:
Q  83 tctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactattt 182  Q
    |||||| || || |||||||||||||||||| ||||| |||| ||| | ||||||||  || | ||||||| ||||  |||| ||||||| ||||||| |    
T  11580529 tctttacggattctcaattaaaaaattattcattaaataagtctaatacttcaatttttgatggattgaatacacatgtttccataaaaacttactatct 11580430  T
Q  183 aaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    |||||| ||||| | || ||||| || |||| | ||||||||    
T  11580429 aaagtctttaaagagtgctcttaagaaactcataaacatttc 11580388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 26271585 - 26271441
Alignment:
Q  71 ttttaagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaa 170  Q
    |||||||||||||||||||   ||||||||||||||||||||  || | || |||||| | ||||||||        |||| |||| |||||| ||||||    
T  26271585 ttttaagggcactctttaaaaattttcaattaaaaaattatttattgagaaggtttaatacttcaattt--------ttga-tgcataattttttataaa 26271495  T
Q  171 aatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    ||||||||||||||||| || ||| | || | ||| ||||||||||| ||||||    
T  26271494 aatttactatttaaagttctaaaacagtgcttttaagacactcgttatcatttc 26271441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 5403581 - 5403687
Alignment:
Q  118 aaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgtta 217  Q
    |||||||| ||||||||||||| | | ||||||||||||||  |||| ||||||  ||||||||| ||  || |||| | | | || |||||||||||||    
T  5403581 aaaaagttaaacatttcaattttcaatgcattgaatgcacatatttccataaaatattactattttaaacccataaagagtatcctaaggacactcgtta 5403680  T
Q  218 acatttc 224  Q
    |||||||    
T  5403681 acatttc 5403687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 32770863 - 32770737
Alignment:
Q  98 aattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaa 197  Q
    |||||| ||||||||  || |||||  |||| | |||||||||  | |||||||  ||| || |||| |||||| |||||||| ||||||||||||| ||    
T  32770863 aattaagaaattatttattgaaaaaacttaatacttcaatttcgaatgcattgaccgcataaatttccataaaattttactatctaaagtccttaaagaa 32770764  T
Q  198 tgttcttaggacactcgttaacatttc 224  Q
    ||||||||   ||||| ||||||||||    
T  32770763 tgttcttaacgcactcattaacatttc 32770737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 193
Target Start/End: Complemental strand, 33634909 - 33634796
Alignment:
Q  80 cactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttacta 179  Q
    |||||||||||| | || ||||||| |||||||| || ||||  |  ||  ||||||||||| | | | ||| ||||||| ||| |||||||| ||||||    
T  33634909 cactctttaaggatgttaaattaaataattattcgtttaaaatatgaaagttttcaatttccaatgtactgattgcacaactttttataaaaagttacta 33634810  T
Q  180 tttaaagtccttaa 193  Q
    ||||||||||||||    
T  33634809 tttaaagtccttaa 33634796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 31452370 - 31452312
Alignment:
Q  167 taaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttct 225  Q
    |||||| |||||||||||||| |||||| |||||||   | ||||||||||||||||||    
T  31452370 taaaaacttactatttaaagtgcttaaataatgttccgggaacactcgttaacatttct 31452312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 34233968 - 34233891
Alignment:
Q  145 gcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacattt 223  Q
    ||||||| | ||||| |||  |||||||||||||||| || || |||||| | ||| ||||||||||||||||||||||    
T  34233968 gcattgattacacaaatttgaataaaaatttactattaaaggtgcttaaagagtgt-cttaggacactcgttaacattt 34233891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 13538387 - 13538536
Alignment:
Q  76 agggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaattt 175  Q
    |||||||||||||||  |  | ||||| |||||||||| |||||||| |  || | |||||||||| | ||||||||| || || |||  ||||||| ||    
T  13538387 agggcactctttaagcatactaaattagaaaattattctttaaaaaattcaaataattcaatttccaatgcattgaatacataacttttcataaaaagtt 13538486  T
Q  176 actatttaaagtccttaaaaaatgttcttaggacactcgttaacatttct 225  Q
    |||||||||   ||||||| | ||| |  ||| |||| ||||||||||||    
T  13538487 actatttaagacccttaaagagtgtccccagggcactagttaacatttct 13538536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 225
Target Start/End: Original strand, 36260474 - 36260567
Alignment:
Q  132 ttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttct 225  Q
    ||||||||| || ||||| ||| ||||| ||| |||| |||||||||||  |||||||| ||| |||||  | ||||||||| ||| |||||||    
T  36260474 ttcaatttctgatgcattaaatacacaaatttttatataaatttactatccaaagtcctcaaagaatgtcataaggacactcattagcatttct 36260567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 44195499 - 44195600
Alignment:
Q  77 gggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaattta 176  Q
    ||||||||||||||  |||| |||||| ||||||||| ||| ||||||| || | |||||||| | | ||||| ||| ||||  ||| |||||||| |||    
T  44195499 gggcactctttaagcattttaaattaagaaattattctttacaaaagttaaataattcaatttacaatgcattaaatacacatgtttttataaaaagtta 44195598  T
Q  177 ct 178  Q
    ||    
T  44195599 ct 44195600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 28572587 - 28572531
Alignment:
Q  168 aaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    ||||| ||||||||||||||  ||||||| | | |||||| ||||||||||||||||    
T  28572587 aaaaacttactatttaaagttgttaaaaagtatccttagggcactcgttaacatttc 28572531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 33617974 - 33618038
Alignment:
Q  118 aaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactattt 182  Q
    |||||||| || |||| ||||||| | ||||||||||||||  |||||||||||  |||||||||    
T  33617974 aaaaagttaaatattttaatttccaatgcattgaatgcacatatttctataaaatcttactattt 33618038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 248580 - 248428
Alignment:
Q  73 ttaagggcactctttaaggtttttcaattaaaaaattattcctt-aaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaa 171  Q
    |||||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||| |||||||||||| | |||||||||||||||||| ||||||    
T  248580 ttaagggcactctttaaggtttctcaattaagaaattatttctttaaaaaagtttaacacttcaatttccgatgtattgaatgcacaattttccataaaa 248481  T
Q  172 atttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    ||||||||||| ||||||||||| | ||  |||| | |||| |||||||||||    
T  248480 atttactatttcaagtccttaaagagtgcccttaaggcactagttaacatttc 248428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 85 - 198
Target Start/End: Complemental strand, 20125759 - 20125647
Alignment:
Q  85 tttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaa 184  Q
    ||||| ||||||||||||| || |||||| |||||||||||||||| |||||||| ||| ||| | |||||||||||||  |||||||||||||||||||    
T  20125759 tttaaagtttttcaattaagaa-ttattctttaaaaaagtttaacacttcaattttcgatgcactaaatgcacaatttttcataaaaatttactatttaa 20125661  T
Q  185 agtccttaaaaaat 198  Q
    ||||||||||||||    
T  20125660 agtccttaaaaaat 20125647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 74 - 223
Target Start/End: Original strand, 42877233 - 42877382
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    ||||| |||||||||| |||| |||||| | ||||||||| | |||||||||||| |||||||||| | | | ||||||| |||||||||| ||||||||    
T  42877233 taaggacactctttaaagtttctcaattgagaaattattcatgaaaaaagtttaaaatttcaattttcaatgtattgaatacacaattttccataaaaat 42877332  T
Q  174 ttactatttaaagtccttaaaaaatgttcttaggacactcgttaacattt 223  Q
    ||||||||||||||| ||||| | ||  ||||| | ||||||||||||||    
T  42877333 ttactatttaaagtctttaaagagtgcccttagaatactcgttaacattt 42877382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 39234521 - 39234596
Alignment:
Q  1 aaattggtacatggttaattcaattatgatgttatttatttcataatgctagtaatcctagttcatgtaattttaa 76  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||    
T  39234521 aaattggtacatggttaattcaattatgatgttatttatttcaaaatgctagtaatcatatttcatgtaattttaa 39234596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 16980773 - 16980878
Alignment:
Q  120 aaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgttaac 219  Q
    ||||||||||| ||||||||||||  ||||||||| | ||||||  |||||||| |||||||||||||| ||||| | ||| ||||||| |||||||| |    
T  16980773 aaagtttaacacttcaatttccgatacattgaatgtataatttttcataaaaatgtactatttaaagtctttaaagagtgtccttaggatactcgttagc 16980872  T
Q  220 atttct 225  Q
    ||||||    
T  16980873 atttct 16980878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 11010257 - 11010383
Alignment:
Q  98 aattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaa 197  Q
    |||||| ||| ||||| || ||||||| ||| | ||||||||| || ||||||||| ||||| |||| |||||||  |||||| | ||||||||||||||    
T  11010257 aattaagaaactattcattgaaaaagtctaatacttcaatttctgatgcattgaatacacaactttccataaaaacatactatctgaagtccttaaaaaa 11010356  T
Q  198 tgttcttaggacactcgttaacatttc 224  Q
    ||  |||||| ||||||||| ||||||    
T  11010357 tgcccttaggccactcgttagcatttc 11010383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 18988742 - 18988892
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    |||||||||||||| ||| ||   | |||||||  ||||| | |||||||| ||| | || ||||||| | |||||||||||| || |||  ||||||||    
T  18988742 taagggcactctttgaggattcctacttaaaaatctattcatcaaaaaagtctaatacttaaatttccaatgcattgaatgcataagttttcataaaaat 18988841  T
Q  174 ttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    ||||||| ||| ||||||||||| |   |||||| ||||||||| ||||||    
T  18988842 ttactatctaatgtccttaaaaagtacccttagggcactcgttatcatttc 18988892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 40944360 - 40944234
Alignment:
Q  98 aattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaa 197  Q
    |||||| ||||||||| || ||||||| |||   |||||||| ||| |||||||||| |||| |||| ||||||||||||||| ||||||  |||||       
T  40944360 aattaagaaattattcattgaaaaagtataatgcttcaattttcgatgcattgaatgtacaaatttccataaaaatttactatctaaagtatttaaagtg 40944261  T
Q  198 tgttcttaggacactcgttaacatttc 224  Q
    |||  | || |||||||||||||||||    
T  40944260 tgtcataagaacactcgttaacatttc 40944234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 3628974 - 3628870
Alignment:
Q  124 tttaacatttcaatttccgaagcattgaatgcacaattttctata--aaaatt---tactatttaaagtccttaaaaaatgttcttaggacactcgttaa 218  Q
    |||||||||||||||| |||  |||||||||||| ||||||||||  ||||||   |||||| |||||| ||||||||||   ||||| ||||||||||     
T  3628974 tttaacatttcaattttcgatccattgaatgcaccattttctataaaaaaatttactactatataaagttcttaaaaaataaacttagaacactcgttag 3628875  T
Q  219 cattt 223  Q
    |||||    
T  3628874 cattt 3628870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 4857266 - 4857329
Alignment:
Q  91 gtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatg 154  Q
    ||||||||||||| ||||||||| || |||||||||||||||| ||||| |||  |||||||||    
T  4857266 gtttttcaattaagaaattattctttgaaaaagtttaacattttaattttcgatacattgaatg 4857329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 16667315 - 16667258
Alignment:
Q  167 taaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    |||||| |||||||||||||| |||||||| ||||||   ||||||||||||||||||    
T  16667315 taaaaacttactatttaaagtgcttaaaaagtgttctggagacactcgttaacatttc 16667258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 35506164 - 35506202
Alignment:
Q  134 caatttccgaagcattgaatgcacaattttctataaaaa 172  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  35506164 caatgtccgatgcattgaatgcacaattttctataaaaa 35506202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 13978745 - 13978672
Alignment:
Q  78 ggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattga 151  Q
    |||||| ||||||| ||| |||| || |||||||| |||||||||||| || | |||||||||| | |||||||    
T  13978745 ggcactttttaaggatttccaataaagaaattatttcttaaaaaagttaaaaacttcaatttccaatgcattga 13978672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 29558282 - 29558343
Alignment:
Q  166 ataaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttcttt 227  Q
    ||||||||||| |||| |||||||||||| |||||  ||||  || ||||||||||||||||    
T  29558282 ataaaaatttattattaaaagtccttaaagaatgtctttagagcattcgttaacatttcttt 29558343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 41583563 - 41583639
Alignment:
Q  105 aaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcaca-attttctataaaaatttactatt 181  Q
    |||||||||||| |||||||| || ||| ||| |||| | ||||||||| |||| |||||| ||||||||||||||||    
T  41583563 aaattattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttc-ataaaaatttactatt 41583639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 42265425 - 42265490
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaattt 139  Q
    |||| ||||||||||||| || | ||| |||||||||||| ||||||||||  || ||||||||||    
T  42265425 taagagcactctttaaggattcttaataaaaaaattattctttaaaaaagtcaaaaatttcaattt 42265490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 5115 - 5013
Alignment:
Q  80 cactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttacta 179  Q
    |||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||| ||||||||||||||    
T  5115 cactttttaaggtttcccaattaaaaaattattccttaaaaaagtttaacatttcaatttcccatgcattgaatgcataattttccataaaaatttacta 5016  T
Q  180 ttt 182  Q
    |||    
T  5015 ttt 5013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 74 - 224
Target Start/End: Complemental strand, 122582 - 122432
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    ||||||||||||||||| ||| |||||||| ||||||||| || ||||||||||||| || ||||||||| ||||| |||||||||||||| |||||||     
T  122582 taagggcactctttaagatttctcaattaagaaattattctttgaaaaagtttaacactttaatttccgatgcattaaatgcacaattttccataaaaaa 122483  T
Q  174 ttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    |||||| ||||| |||||||| ||||  || | | ||||||||||||||||    
T  122482 ttactacttaaaatccttaaagaatgccctaaaggcactcgttaacatttc 122432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 44319972 - 44319823
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    ||||| ||||||||||||| |||||||||| ||||||||  || ||||||||||||| || ||||| ||| ||||| |||||||||||| | ||||||||    
T  44319972 taaggacactctttaaggtatttcaattaagaaattatttttttaaaaagtttaacactttaattttcgatgcattaaatgcacaatttcccataaaaat 44319873  T
Q  174 ttactatttaaagtccttaaaaaatgttcttaggacactcgttaacattt 223  Q
    ||| ||||||||||||||||| |||| ||| || | ||||||||||||||    
T  44319872 ttattatttaaagtccttaaataatgctctaagaatactcgttaacattt 44319823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 80 - 224
Target Start/End: Original strand, 6771832 - 6771976
Alignment:
Q  80 cactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttacta 179  Q
    ||||||||||||||| |||||||| ||||||||| || |||||  | | |||||||||||||||   |||||||||||||||||| ||||||||||||||    
T  6771832 cactctttaaggtttctcaattaagaaattattctttgaaaaaactcaccatttcaatttccgatatattgaatgcacaattttccataaaaatttacta 6771931  T
Q  180 tttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    ||||||||||||||| | ||| ||||||  ||||| |||||||||    
T  6771932 tttaaagtccttaaagagtgtccttagggtactcgctaacatttc 6771976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 83 - 224
Target Start/End: Original strand, 26200 - 26340
Alignment:
Q  83 tctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactattt 182  Q
    ||||||||||||| ||||||| ||||||||| ||  |||||||||||| || ||||| ||| ||||| |||| ||||||| | ||||||||||| |||||    
T  26200 tctttaaggtttt-caattaagaaattattctttgcaaaagtttaacactttaattttcgatgcattaaatgtacaatttcccataaaaatttattattt 26298  T
Q  183 aaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    ||||| |||||| ||||| || |||||||||||||| |||||    
T  26299 aaagttcttaaagaatgtcctaaggacactcgttaatatttc 26340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 81 - 217
Target Start/End: Complemental strand, 5496080 - 5495947
Alignment:
Q  81 actctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactat 180  Q
    |||||||||||||| |||||||| |||||||||||| |||| |||||||| || ||||| ||| ||||||||||||||| |||| |||||   |||||||    
T  5496080 actctttaaggtttctcaattaagaaattattccttgaaaatgtttaacactttaattttcgatgcattgaatgcacaactttccataaa---ttactat 5495984  T
Q  181 ttaaagtccttaaaaaatgttcttaggacactcgtta 217  Q
    | |||||||||||| | || ||||| | |||||||||    
T  5495983 tcaaagtccttaaagagtgctcttaaggcactcgtta 5495947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 6775222 - 6775331
Alignment:
Q  76 agggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaattt 175  Q
    ||||||||||||||||||| |||||||| ||||||||| || |||||  | |  |||| ||||||||| |||||||||||||||||||| ||||| ||||    
T  6775222 agggcactctttaaggtttctcaattaataaattattctttgaaaaatctcactatttgaatttccgatgcattgaatgcacaattttccataaatattt 6775321  T
Q  176 actatttaaa 185  Q
    ||||||||||    
T  6775322 actatttaaa 6775331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 31902835 - 31902746
Alignment:
Q  105 aaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaa 194  Q
    |||||||||||||| |||||  || |||||||||| | |  |||||| | |||||||||| |||||||||||||||||||||||||||||    
T  31902835 aaattattccttaagaaagtcaaatatttcaattttcaatacattgactacacaattttccataaaaatttactatttaaagtccttaaa 31902746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 24934541 - 24934433
Alignment:
Q  115 ttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaatgttcttaggacactcg 214  Q
    ||||||| |||||| | |||||||||| | |  ||| |||||||| ||| |||||||||| ||||| ||||||||||||| |||||||||||   |||||    
T  24934541 ttaaaaatgtttaatacttcaatttcctatgagttgcatgcacaagtttatataaaaattcactatctaaagtccttaaataatgttcttagagaactcg 24934442  T
Q  215 ttaacattt 223  Q
    ||| |||||    
T  24934441 ttagcattt 24934433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 13040332 - 13040262
Alignment:
Q  153 tgcacaattttctataaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacattt 223  Q
    |||||||||||  ||||||||||||||||||||||| ||||| |||||| |||||| ||| |||| |||||    
T  13040332 tgcacaatttttcataaaaatttactatttaaagtctttaaagaatgtttttaggatactagttagcattt 13040262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 3298207 - 3298327
Alignment:
Q  73 ttaagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaa 172  Q
    |||||||||||||||||| |  | ||||||| ||| ||||| || |||||| || | ||||||||||| || |||||||||||  || |||| |||||||    
T  3298207 ttaagggcactctttaagatact-caattaagaaactattcattgaaaaagcttcatatttcaatttctgatgcattgaatgcttaagtttccataaaaa 3298305  T
Q  173 tttactatttaaagtccttaaa 194  Q
    ||||  || |||||| ||||||    
T  3298306 tttaacatctaaagttcttaaa 3298327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 11914902 - 11914849
Alignment:
Q  167 taaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgttaaca 220  Q
    |||||| ||||||| ||||||||||||| | || ||||||||||||||||||||    
T  11914902 taaaaacttactatctaaagtccttaaagagtgctcttaggacactcgttaaca 11914849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 41898254 - 41898345
Alignment:
Q  85 tttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaattta 176  Q
    ||||||| ||||||||||| ||| | ||| || |||||||| || | |||||||||||| ||||| |||| |||| |||| |||| ||||||    
T  41898254 tttaaggattttcaattaagaaacttttcattgaaaaagttcaataattcaatttccgatgcattaaatgtacaagtttccataacaattta 41898345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 223
Target Start/End: Complemental strand, 20397542 - 20397437
Alignment:
Q  118 aaaaagtttaacatttcaatttccgaagcattgaatgcaca-attttctataaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgtt 216  Q
    |||||||| ||||||||||||| | | |||||||||||||| |||||| ||||||  ||||||||| || |||||||| | ||| || || ||||| |||    
T  20397542 aaaaagttaaacatttcaattttcaatgcattgaatgcacacattttc-ataaaatattactattttaaatccttaaagagtgtcctaagaacacttgtt 20397444  T
Q  217 aacattt 223  Q
    || ||||    
T  20397443 aatattt 20397437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 43211075 - 43211021
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaa 128  Q
    ||||||||||||||||| |||||||||||||||| ||||  |  |||||||||||    
T  43211075 taagggcactctttaagatttttcaattaaaaaactatttatctaaaaagtttaa 43211021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 187
Target Start/End: Complemental strand, 17883430 - 17883317
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    |||||||||||||||||| |||| ||| || ||||||||  ||||||||||  || | || ||||||| | ||||||| | || || |||  | |||||     
T  17883430 taagggcactctttaaggatttttaataaagaaattattttttaaaaaagtcaaaaactttaatttccaacgcattgatttcataaattttgacaaaaac 17883331  T
Q  174 ttactatttaaagt 187  Q
    ||||||||||||||    
T  17883330 ttactatttaaagt 17883317  T

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Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 29988437 - 29988296
Alignment:
Q  81 actctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactat 180  Q
    |||||||||||||| |||||||| ||||||||| |||||||||| |||  |||||||||  || | ||||||||  |||||||| |||||||||||||||    
T  29988437 actctttaaggtttctcaattaagaaattattctttaaaaaagtataa--tttcaatttttgatgtattgaatgttcaattttccataaaaatttactat 29988340  T
Q  181 ttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    |||||||||||||| | ||||||||  |||||| ||| ||||||    
T  29988339 ttaaagtccttaaagagtgttcttacaacactcattagcatttc 29988296  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 10571059 - 10570907
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    ||||| |||||||||||| || | |||||| ||| ||||| || |||| ||| || | ||||||||  || |||||||||| |||| |||||||||||||    
T  10571059 taaggacactctttaaggattcttaattaagaaactattcattgaaaatgttcaatacttcaatttttgatgcattgaatgaacaaatttctataaaaat 10570960  T
Q  174 ttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttctt 226  Q
    ||||||  ||||||| ||||| | ||| |||| |||| |||||| ||||||||    
T  10570959 ttactaaataaagtctttaaagagtgtccttatgacattcgttagcatttctt 10570907  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 34530426 - 34530349
Alignment:
Q  147 attgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaatgttcttaggacactcgttaacatttc 224  Q
    |||||||| ||||||||| |||||||  ||||||||||||| |||||| |||| ||||||| ||||||||||||||||    
T  34530426 attgaatgtacaattttccataaaaacatactatttaaagtgcttaaagaatgctcttagggcactcgttaacatttc 34530349  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 5678562 - 5678476
Alignment:
Q  100 ttaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatttaaag 186  Q
    |||| ||||||||| |||||||||||||| | |||||||| | |  ||||||||  | || |||||||||||||||||||| |||||    
T  5678562 ttaagaaattattcattaaaaaagtttaatacttcaattttcaatacattgaatatataaatttctataaaaatttactatctaaag 5678476  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 10245857 - 10245806
Alignment:
Q  147 attgaatgcacaattttctataaaaatttactatttaaagtccttaaaaaat 198  Q
    |||||||| ||||||||| ||||||||||||||| |||| | ||||||||||    
T  10245857 attgaatgtacaattttccataaaaatttactatctaaaattcttaaaaaat 10245806  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 1479138 - 1479089
Alignment:
Q  145 gcattgaatgcacaattttctataaaaatttactatttaaagtccttaaa 194  Q
    ||||||||| |||||||||  |||||||||||| ||||||||| ||||||    
T  1479138 gcattgaatacacaattttacataaaaatttaccatttaaagtgcttaaa 1479089  T

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Target: scaffold0172 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 223
Target Start/End: Original strand, 13454 - 13603
Alignment:
Q  74 taagggcactctttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaat 173  Q
    |||||||||||||||| | ||   |||||| ||| ||||| || ||||||| ||| | |||||||||||| || |||||||||||| |||| |||||||     
T  13454 taagggcactctttaaagattcctaattaagaaactattcattgaaaaagtctaatacttcaatttccgatgctttgaatgcacaagtttccataaaaac 13553  T
Q  174 ttactatttaaagtccttaaaaaatgttcttaggacactcgttaacattt 223  Q
     |||||| | ||||| ||||| | ||  |||| | ||||||||| |||||    
T  13554 ctactatctcaagtctttaaagagtgcccttaaggcactcgttagcattt 13603  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 21296 - 21335
Alignment:
Q  80 cactctttaaggtttttcaattaaaaaattattccttaaa 119  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  21296 cactctttaaggttttccaattaagaaattattccttaaa 21335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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