View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18244_high_6 (Length: 569)
Name: NF18244_high_6
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 19 - 528
Target Start/End: Original strand, 41818327 - 41818836
Alignment:
| Q |
19 |
atttgttacatatttgacaacgggatttgagttgtaatagacaaatacagggtaataagaacaatcttgaggcctcgtcagttcattttcaataataaat |
118 |
Q |
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| T |
41818327 |
atttcttacatatttgacaacgggatttgagttgtaatagacaaatacagggtaataagaacaatcttgaggcctcgtcagttcattttcaataataaat |
41818426 |
T |
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| Q |
119 |
gaaaaatgacaaacacaaacaatgatatcatataggatttaacttgtatattctattattgtgannnnnnncttcttctttcaacatgcatctaataact |
218 |
Q |
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| T |
41818427 |
gaaaaatgacaaacacaaacaatgatatcatataggatttaacttgtatattctattattgagatttttttcttcttctttcaacatgcatctaataact |
41818526 |
T |
|
| Q |
219 |
tctctcattcattatatatgtatttgtagatattttaaaaactagcataacaaagtgatactgtggtataattcaattgaatgtataaaaaataacacct |
318 |
Q |
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| T |
41818527 |
tctctcattcaatatatatgtatttgtagatattttcaaaactagcataacaaagtgatactgtggtataattcaattgaatgtataaaaaataacacct |
41818626 |
T |
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| Q |
319 |
tcaatgcattcataataactatacatcggtctataaatataaaaccctcttgagagtttttcttgtcattttttccttaaatttttactaacatattctt |
418 |
Q |
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| T |
41818627 |
tcaatgcattcataataactatacatcggtctataaatataaaaccctcttgagattttttcttgtcattttttccttaaatttttactaacatattctt |
41818726 |
T |
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| Q |
419 |
tagtaaaactcatcacaaaataatagaattatgttacatgnnnnnnnnaacttgcaataaatactacttgaaaacataaattaattatctaaagagcatg |
518 |
Q |
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| T |
41818727 |
tagtaaaactcatcacaaaataatagaattatgttacatgttttttttaacttgcaataaatactacttgaaaacataaattaattatctaaagagcatg |
41818826 |
T |
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| Q |
519 |
caattgtaaa |
528 |
Q |
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| T |
41818827 |
caattgtaaa |
41818836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 44830235 - 44830166
Alignment:
| Q |
24 |
ttacatatttgacaacgggatttgagttgtaatagacaaatacagggtaataagaacaatcttgaggcct |
93 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
44830235 |
ttacatatttgacaacgggatttgagttgtaagagacaaatacagagtaataagaacaatcttgaggcct |
44830166 |
T |
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