View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18244_low_1 (Length: 909)
Name: NF18244_low_1
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 753; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 11 - 890
Target Start/End: Complemental strand, 46124908 - 46124020
Alignment:
| Q |
11 |
catcatcaccagaagcaatatctcctagaatctccagagccggcacagcaacttttgactccggatacctgtatcaggggacaagnnnnnnnnnnnnnca |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
46124908 |
catcatcaccagaagcaatatctcctagaatctccagagccggcacaacaacttttgactccggatacctgtatcaggggacaagaaaaaaagaaaaaca |
46124809 |
T |
|
| Q |
111 |
tggattaagtcaccccgagaatatcagtgctaccgaaaaaagacacaaaaggtattgtaatcaatccaggacttacagtagtaactctacaagtcgtggg |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46124808 |
tggattaagtcaccccgagaatatcagtgctaccgaaaaaagacacaaaaggtattgtaatcaatcaaggacttacagtagtaactctacaagtcgtggg |
46124709 |
T |
|
| Q |
211 |
caaaattttgcctcaacgatagcttgaaccattttgtctgaacctttctgagtaaaccaggagaggagatggcatgcatatagtataacttcttcatcag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46124708 |
caaaattttgcctcaacgatagcttgaaccattttgtctgaacctttctgagtaaaccaggagaggagatggcatgcatatagtataacttcttcatcag |
46124609 |
T |
|
| Q |
311 |
gcatcaataagagctcccgaaggccagacaatgctggtagcatctgaaaaagataacaggagagcatgcagttggagaagagaagataacaaacaatgtg |
410 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46124608 |
gcatcaataagagctcctgaaggccagacaatgctggtagcatctgaaaaagataacaggagagcatgcagttggagaagagaagataacaaacaatgtg |
46124509 |
T |
|
| Q |
411 |
taaattcatta---------atttatagaggatatgctaaatttactgcacatgctatccgtgcaaatttttcccaacctgatcctgaagagttagaaga |
501 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
46124508 |
taaattcattatatttattaatttatataggatatgctaaatttactgcacatgctatccttgcaaatttttcccaacctgattctgaagagttagaaga |
46124409 |
T |
|
| Q |
502 |
ggctttccgcgagtgaagttgaaaaaagcccatgtagcaatattccatgtagannnnnnngttgaagaaggattccacatcaaagacaatagtggagaaa |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46124408 |
ggctttccgcgagtgaagttgaaaaaagcccatgtagcaatattccatgtagatttttttgttgaagaaggattccacatcaaagacaatagtggagaaa |
46124309 |
T |
|
| Q |
602 |
gtgcaccatgatttaaaacaagatcccttgcagtcagggaattgccagcaatattacctaatgcccataatgcctgatcaatacatgagacattgaaatt |
701 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46124308 |
gtgcaccatgatttaaaacaatatcccttgcggtcagggaattgccagcaatattacctaatgcccataatgcctgttcaatacatgagacattgaaatt |
46124209 |
T |
|
| Q |
702 |
gtgtaagcgatcaactcatacatagatacatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaagacatcacctgttctttgccg |
801 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46124208 |
gtgtaagcgatcgactcatacatagatacatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaagacatcacctgttctttgccg |
46124109 |
T |
|
| Q |
802 |
tcatcactgccagagctcagaagcttcacaagcagaggaacagcaccatgttcaatcacagtatttgtatgctcagacaatcccgcagt |
890 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
46124108 |
tcatcactgccagagctcagaagcttcacaagcagaggaacagcaccatgttcaatcacagtatttgtatgttcagacaatcccgcagt |
46124020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 11 - 887
Target Start/End: Complemental strand, 46703704 - 46702816
Alignment:
| Q |
11 |
catcatcaccagaagcaatatctcctagaatctccagagccggcacagcaacttttgactccggatacctgtatcaggggacaagnnnnnnnnnnnnnca |
110 |
Q |
| |
|
|||||| |||||||||||| |||||||||| || |||||| |||||| ||||||||||||||||||||||||| ||||| ||||| || |
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|
| T |
46703704 |
catcattaccagaagcaatttctcctagaacctgcagagcaggcacaacaacttttgactccggatacctgtaccagggtacaagagaaaaagataa-ca |
46703606 |
T |
|
| Q |
111 |
tggattaagtcaccccgagaatatcagtgctaccgaaaaaagacacaaaaggtattgtaatcaat-------ccaggacttacagtagtaactctacaag |
203 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||||||||||||||||||||| |
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|
| T |
46703605 |
tggatgaagtcacctcgagaatatcagtgctaccgaaaaaagacacaaata-tattgtaatcactaatcagtcaaggacttacagtagtaactctacaag |
46703507 |
T |
|
| Q |
204 |
tcgtgggcaaaattttgcctcaacgatagcttgaaccattttgtctgaacctttctgagtaaaccaggagaggagatggcatgcatatagtataacttct |
303 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||| |||||||| | |||||||| |||| |||| | | ||||||||||||| |||| | |
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|
| T |
46703506 |
tcgtgggcaaaaatttccctcaacgatagcttgaaccatttcgtctgaacaatcctgagtaagccagtagagaatagagcatgcatatagttgaactgat |
46703407 |
T |
|
| Q |
304 |
tcatcaggcatcaataagagctcccgaaggccagacaatgctggtagcatctgaaaaagataacaggagagcatgcagttggagaagagaagataacaaa |
403 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
46703406 |
tcatcaggcatcaataagagttcccgaaggccagacaatgctggtaagatctgaaaaggataacaggagagcatgcagttggagaagagaaattaacaaa |
46703307 |
T |
|
| Q |
404 |
-caatgtgtaaattcatta---------atttatagaggatatgctaaatttactgcacatgctatccgtgcaaatttttcccaacctgatcctgaagag |
493 |
Q |
| |
|
|||||| ||||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||| |
|
|
| T |
46703306 |
acaatgtctaaattcattatatttatgaaattatataggatatgctaaatttactgcacatgctatccttgcaaagttttcccaacctgatcctcaagag |
46703207 |
T |
|
| Q |
494 |
ttagaagaggctttccgcgagtgaagttgaaaaaagcccatgtagcaatattccatgtagannnnnnngttgaagaaggattccacatcaaagacaatag |
593 |
Q |
| |
|
||||| |||||||| | ||| | | ||||| |||||||||| ||||||| |||||||||| ||| |||||||||||||| || |||||||| |
|
|
| T |
46703206 |
ttagaggaggcttttcacgaataatgttgacaaaagcccatatagcaatcctccatgtagattttt---ttgtagaaggattccacaacagagacaataa |
46703110 |
T |
|
| Q |
594 |
tggagaaagtgcaccatgatttaaaacaagatcccttgcagtcagggaattgccagcaatattacctaatgcccataatgcctgatcaatacatgagaca |
693 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46703109 |
tggagaaagtgcaccattatttaaaacaagatcccttgcggtcagggaattgccagcaatattacctaatgcccataatgcctgttcaatacatgagaca |
46703010 |
T |
|
| Q |
694 |
ttgaaattgtgtaagcgatcaactcatacatagatacatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaagacatcacctgtt |
793 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||||||||||||| || |||||||||| |||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
46703009 |
ttgaaattctgtaagggatcaacacatacatagatacatgcatacacaatggttttctcaatgcaattatgccaagagattgaagaagacatcacctgtt |
46702910 |
T |
|
| Q |
794 |
ctttgccgtcatcactgccagagctcagaagcttcacaagcagaggaacagcaccatgttcaatcacagtatttgtatgctcagacaatcccgc |
887 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46702909 |
ctttgccgtcatcacaaccagagctcagaagctgcacaagcagaggaacagcaccatgttcaatcacagtatttgtatgctcagacaatcccgc |
46702816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 418 - 887
Target Start/End: Complemental strand, 46130501 - 46130032
Alignment:
| Q |
418 |
attaatttatagaggatatgctaaatttactgcacatgctatccgtgcaaatttttcccaacctgatcctgaagagttagaagaggctttccgcgagtga |
517 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| || |||| || || | | |
|
|
| T |
46130501 |
attaaattatataggatatgctaaatttactgcacatgctatccttgcaaacttttcccaacctgatcctcaagagttagtggaagcttcccaggaataa |
46130402 |
T |
|
| Q |
518 |
agttgaaaaaagcccatgtagcaatattccatgtagannnnnnngttgaagaaggattccacatcaaagacaatagtggagaaagtgcaccatgatttaa |
617 |
Q |
| |
|
|||| |||||||||| ||||||| |||||||||| |||| |||||||||||||| || |||||||| ||||| |||||||||||||||||| |
|
|
| T |
46130401 |
cgttggcaaaagcccatatagcaatcctccatgtagatttttctgttgcagaaggattccacaacagagacaataatggaggaagtgcaccatgatttaa |
46130302 |
T |
|
| Q |
618 |
aacaagatcccttgcagtcagggaattgccagcaatattacctaatgcccataatgcctgatcaatacatgagacattgaaattgtgtaagcgatcaact |
717 |
Q |
| |
|
||||| |||| | || ||| ||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
46130301 |
aacaacatccttcgcggtctcagaactaccagcaatattacctaatgcccataatgcctgttcaatacatgagacattgaaattgtgtaagcgatcgact |
46130202 |
T |
|
| Q |
718 |
catacatagatacatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaagacatcacctgttctttgccgtcatcactgccagagc |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46130201 |
catacatagatacatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaagacatcacctgttctttgccgtcatcactaccagagc |
46130102 |
T |
|
| Q |
818 |
tcagaagcttcacaagcagaggaacagcaccatgttcaatcacagtatttgtatgctcagacaatcccgc |
887 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46130101 |
tcagaagcttcacaaggagaggaacagcaccatgttcaatcacagtatttgtatgctcagacaatcccgc |
46130032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 117 - 361
Target Start/End: Complemental strand, 46130784 - 46130534
Alignment:
| Q |
117 |
aagtcaccccgagaatatcagtgctaccgaaaaaagacacaaaaggtattgtaatcaat-------ccaggacttacagtagtaactctacaagtcgtgg |
209 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| | | ||||||||||||||||||||||||||||| || |
|
|
| T |
46130784 |
aagtcacctcgagaatatcagtgctaccgaaaaacgacacaaata-tattgtaatcactaatcagtcaaggacttacagtagtaactctacaagtcgcgg |
46130686 |
T |
|
| Q |
210 |
gcaaaattttgcctcaacgatagcttgaaccattttgtctgaacctttctgagtaaaccaggagaggagatggcatgcatatagtataacttcttcatca |
309 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||||| ||||||| | | |||||| |||| |||| | | |||||||||||||| |||| ||||||| |
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|
| T |
46130685 |
gcaaaaatttccctcaaggatagcttgaaccattttgcctgaaccatcccgagtaatccagtagagaatagagcatgcatatagtaaaactaattcatca |
46130586 |
T |
|
| Q |
310 |
ggcatcaataagagctcccgaaggccagacaatgctggtagcatctgaaaaa |
361 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
46130585 |
ggcatcaataagagttcccgaaggccaggcaatgctggtaagatctgaaaaa |
46130534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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