View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18244_low_10 (Length: 479)

Name: NF18244_low_10
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18244_low_10
NF18244_low_10
[»] chr1 (10 HSPs)
chr1 (11-220)||(49250248-49250446)
chr1 (8-130)||(270053-270175)
chr1 (11-104)||(14945436-14945527)
chr1 (15-104)||(14940194-14940281)
chr1 (15-104)||(14950201-14950288)
chr1 (15-104)||(14954442-14954529)
chr1 (11-54)||(49250071-49250114)
chr1 (11-95)||(14941553-14941637)
chr1 (11-95)||(14951560-14951644)
chr1 (11-95)||(14955801-14955885)
[»] chr8 (1 HSPs)
chr8 (11-97)||(8791002-8791088)
[»] chr7 (2 HSPs)
chr7 (244-309)||(9502378-9502443)
chr7 (14-77)||(6205758-6205819)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 49250446 - 49250248
Alignment:
Q  11 tactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgttatcaaattcc-ttg 109  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||  ||||||||||||||||||||||||||||||| |||    
T  49250446 tactttcgttgtataagtggttgtaaagttgaccacatgtaaaaaattcaaattgaagagtat-gatgaaatgaagttactttgttatcaaattcctttg 49250348  T
Q  110 atttcacttttctttctttctcttgatcaacaaaatagagtatcaataaagtaatcaaaatatcaatgaaactggcacataattacaaatatcagtaaaa 209  Q
    ||||||| ||||||||||||| |||||||||||           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49250347 atttcacatttctttctttcttttgatcaacaa-----------aataaagtaatcaaaatatcaatgaaactagcacataattacaaatatcagtaaaa 49250259  T

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Target: chr1; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 270053 - 270175
Alignment:
Q  8 ttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgttatcaaattcct 107  Q
    ||||| |||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||    
T  270053 ttttaatttaattgtatgagccgttgtaaagttgaacacatgtaaaatattcaaattgaggagtattagtgaaatgaagttaccttgttatcaaattcct 270152  T
Q  108 tgatttcacttttctttctttct 130  Q
    ||||||||| |||||||||||||    
T  270153 tgatttcacgtttctttctttct 270175  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 14945527 - 14945436
Alignment:
Q  11 tactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgttatcaaatt 104  Q
    ||||||||||||||  |||||||||| ||| ||| | ||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||    
T  14945527 tactttagttgtataggtggttgtaaggtt-aac-cgtgtaaaatattcaaattgaagagtatcgatgaaatgaagttactttgtattcaaatt 14945436  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 14940281 - 14940194
Alignment:
Q  15 ttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgttatcaaatt 104  Q
    ||||||||||  |||||||||| ||| ||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||  |||||||    
T  14940281 ttagttgtataggtggttgtaaggtt-aac-catgtaaaatattgaaattgaagagtatcgatgaaatgaagttactttgtattcaaatt 14940194  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 14950288 - 14950201
Alignment:
Q  15 ttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgttatcaaatt 104  Q
    ||||||||||  |||||||||| ||| ||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||  |||||||    
T  14950288 ttagttgtataggtggttgtaaggtt-aac-catgtaaaatattgaaattgaagagtatcgatgaaatgaagttactttgtattcaaatt 14950201  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 14954529 - 14954442
Alignment:
Q  15 ttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgttatcaaatt 104  Q
    ||||||||||  |||||||||| ||| ||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||  |||||||    
T  14954529 ttagttgtataggtggttgtaaggtt-aac-catgtaaaatattgaaattgaagagtatcgatgaaatgaagttactttgtattcaaatt 14954442  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 49250071 - 49250114
Alignment:
Q  11 tactttagttgtatgagtggttgtaaagttgaacacatgtaaaa 54  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  49250071 tactttagttgtattagtggttgtaaagttgaccacatgtaaaa 49250114  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 14941637 - 14941553
Alignment:
Q  11 tactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggag-tatcaatg-aaatgaagttactttgt 95  Q
    ||||||||||||||  |||||||||||||  ||| ||||||||||||||||||||| ||| |||  ||| |||||||||||||||||    
T  14941637 tactttagttgtataggtggttgtaaagtc-aac-catgtaaaatattcaaattgaagagttatagatgaaaatgaagttactttgt 14941553  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 14951644 - 14951560
Alignment:
Q  11 tactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggag-tatcaatg-aaatgaagttactttgt 95  Q
    ||||||||||||||  |||||||||||||  ||| ||||||||||||||||||||| ||| |||  ||| |||||||||||||||||    
T  14951644 tactttagttgtataggtggttgtaaagtc-aac-catgtaaaatattcaaattgaagagttatagatgaaaatgaagttactttgt 14951560  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 14955885 - 14955801
Alignment:
Q  11 tactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggag-tatcaatg-aaatgaagttactttgt 95  Q
    ||||||||||||||  |||||||||||||  ||| ||||||||||||||||||||| ||| |||  ||| |||||||||||||||||    
T  14955885 tactttagttgtataggtggttgtaaagtc-aac-catgtaaaatattcaaattgaagagttatagatgaaaatgaagttactttgt 14955801  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 8791002 - 8791088
Alignment:
Q  11 tactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgtta 97  Q
    |||||||||| |||  |||||||||||||| | ||||| |||||||||||||||||||||||||||| ||||||| |||||||||||    
T  8791002 tactttagttttatcggtggttgtaaagtttaccacatataaaatattcaaattgaggagtatcaatcaaatgaaattactttgtta 8791088  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 9502443 - 9502378
Alignment:
Q  244 cgtgccggcatgttcattttacgagtggtgttggaatcctcatgcatgccttgagaggaaggtggt 309  Q
    ||||| |||||||  ||||||||| |||||||||||||||||||| |||||||||||||| |||||    
T  9502443 cgtgctggcatgtctattttacgaatggtgttggaatcctcatgcgtgccttgagaggaaagtggt 9502378  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 6205758 - 6205819
Alignment:
Q  14 tttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaat 77  Q
    ||||||||||  ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||    
T  6205758 tttagttgta--agtggttgtaaagttgaccacatgtaaaacattcaaattgaagagtaccaat 6205819  T

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