View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18244_low_11 (Length: 476)
Name: NF18244_low_11
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 39667338 - 39666874
Alignment:
| Q |
1 |
ccgttgatgtcttactcttgtttactctattagtctttgccatcacaaagctttattctaggttcactagttccaatagaaccaactcagaagaaatcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39667338 |
ccgttgatgtcttactcttgtttactctattagtctttgccatcacaaagctttattctaggttcactagttccaatagaacccactcagaagaaatcaa |
39667239 |
T |
|
| Q |
101 |
caaaccccttatcagtaacacaagagcttcgaacacaagaacaactctatggttcaagctaactataattgcaaccattgttttaactgtattgtatact |
200 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39667238 |
caaaccacttatcagtaacacaagagctttgaacacaagaacaactctatggttcaagctaactctaattgcaaccattgttttaactgtattgtatact |
39667139 |
T |
|
| Q |
201 |
gttggttgcattttagtgtttagcagttccaatgttgaatcaccatggaaacaacttgatggacttttttgggttgttcaagcaataactcaattagtcc |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39667138 |
gttggttgcattttagtttttagcagttccaatgttgaatcaccatggaaacaacttgatggacttttttgggttgttcaagcaataactcaattagtcc |
39667039 |
T |
|
| Q |
301 |
ttgtaatcttaatcatccatgtcaaaagatttgaagctgttgttcaccctttatcacttcgaatttattggattgcgaatttcgttgttgttgctttgtt |
400 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39667038 |
ttgtaatcttaatcatccatgttaaaagatttgaagctgttgttcaccctttatcgcttcgaatttattggattgcaaatttcgttgttgttgctttgtt |
39666939 |
T |
|
| Q |
401 |
cactgcttctggtgttatacgtttggtctctttggagggaagttactttttcatggtggatgatg |
465 |
Q |
| |
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| T |
39666938 |
cactgcttctggtgttatacgtttggtctctttggagggaagttactttttcatggtggatgatg |
39666874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 42257965 - 42257500
Alignment:
| Q |
1 |
ccgttgatgtcttactcttgtttactctattagtctttgccatcacaaagctttattct-aggttcactagttccaatagaaccaactcagaagaaatca |
99 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
42257965 |
ccgttgatgtcttactattgtttactctgttagtctttgccatcacaaagctttattcttaggttcactagttccaatagaaccaactcggaagaaatca |
42257866 |
T |
|
| Q |
100 |
acaaaccccttatcagtaacacaagagcttcgaacacaagaacaactctatggttcaagctaactataattgcaaccattgttttaactgtattgtatac |
199 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| || |
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| T |
42257865 |
acaaaccccttatcggtaacacaacagcttcgaacacaagaacaactctatggttcaagctaactctaattgcaaccattgttttaactatattgtacac |
42257766 |
T |
|
| Q |
200 |
tgttggttgcattttagtgtttagcagttccaatgttgaatcaccatggaaacaacttgatggacttttttgggttgttcaagcaataactcaattagtc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42257765 |
tgttggttgcattttagtgtttagcagttccaatgttgaatcaccatggaaacaacttgatggacttttttgggttgttcaagcaataactcaattagtc |
42257666 |
T |
|
| Q |
300 |
cttgtaatcttaatcatccatgtcaaaagatttgaagctgttgttcaccctttatcacttcgaatttattggattgcgaatttcgttgttgttgctttgt |
399 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| |
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| T |
42257665 |
cttgtaatcctaatcatccatgtcaaaagatttgaagctgttgttcaccctttatcgctgcgaatttattggattgcgaatttcgttgttgctgctttgt |
42257566 |
T |
|
| Q |
400 |
tcactgcttctggtgttatacgtttggtctctttggagggaagttactttttcatggtggatgatg |
465 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
42257565 |
tcactgcttctggtgttattcgtttggtctctttggagggaaattactttttcatggtggatgatg |
42257500 |
T |
|
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