View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18244_low_12 (Length: 459)
Name: NF18244_low_12
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 26515077 - 26514619
Alignment:
| Q |
1 |
tgaaccccatcaacctgagcaccatcaacatatattaatgggaatgcattgcgacgacgcctatttgacataaaaccatgaaataatttggagttggcat |
100 |
Q |
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| T |
26515077 |
tgaaccccatcaacctgagcaccatcgacatatattaatgggaatgcattgcgacgacgcctatttgacataaaaccatgaaataatttggagttggcat |
26514978 |
T |
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| Q |
101 |
taacttcttctaatcaattcattcacgccttctaccaaatcatgctagcttgtactcgagacaaagagtgcaaattcaccgacaactcatgaaattccaa |
200 |
Q |
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| T |
26514977 |
tgacttcttttaatcgattcattcacgccttctaccaaatcatgctagcatgtactcgagacaaagagtgcaaattcaccgacaactcatgaaattccaa |
26514878 |
T |
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| Q |
201 |
caactcagcttccatcaaagcggattaccccttttgcatctaatgttgtttatgccattctttgagacatcccttcatcaatttaagcttttctttcaac |
300 |
Q |
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| T |
26514877 |
caactcagcttccatcaaagccgattaccccttttgcatctaatgttgtttatgccactctttgagacatcccttcatcaatttaagcttttctttcaac |
26514778 |
T |
|
| Q |
301 |
acaaaannnnnnnacccttcaatgttaaaagaactccatttatcacgaacaaattgagcataaccatggaagtcagcccaacatttcagcatcttgagag |
400 |
Q |
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| T |
26514777 |
acaaaacccccccacccttcaatgttaaaagaactccatttatcacgaacaaattgagcataaccatggaagtcagcccaacatttcagcatcctgagag |
26514678 |
T |
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| Q |
401 |
gtctaggtccccaattcacatcatttgttagaagcaacaaaggaacgtgatcgaacagc |
459 |
Q |
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| T |
26514677 |
gtctaggtccccaattcacatcatttgttaggagcaacaaaggaacgtgatcgaacagc |
26514619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 45703941 - 45704035
Alignment:
| Q |
104 |
cttcttctaatcaattcattcacgccttctaccaaatcatgctagcttgtactcgagacaaagagtgcaaattcaccgacaactcatgaaattcc |
198 |
Q |
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| T |
45703941 |
cttcttttaaccaattcatcctcgccttctgccaattcatactagtatgcacacgagacaaagaatgcaaattcactgacaactcatgaagttcc |
45704035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 45470928 - 45471011
Alignment:
| Q |
115 |
caattcattcacgccttctaccaaatcatgctagcttgtactcgagacaaagagtgcaaattcaccgacaactcatgaaattcc |
198 |
Q |
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| T |
45470928 |
caattcatccccgccttctgccaattcatactagtatgcacacgagacaaagaatgcaaattcactgacaactcatgaagttcc |
45471011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 424
Target Start/End: Original strand, 18593462 - 18593546
Alignment:
| Q |
340 |
ttatcacgaacaaattgagcataaccatggaagtcagcccaacatttcagcatcttgagaggtctaggtccccaattcacatcat |
424 |
Q |
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| T |
18593462 |
ttatcccgaacaaagttagcttaaccaggcaagtcaacccaacatttcagcatccttagaggtcggggtccccaattcgcatcat |
18593546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 424
Target Start/End: Original strand, 20892103 - 20892189
Alignment:
| Q |
338 |
atttatcacgaacaaattgagcataaccatggaagtcagcccaacatttcagcatcttgagaggtctaggtccccaattcacatcat |
424 |
Q |
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| T |
20892103 |
atttaccacgaacaaattcagcatacccatggtaatctgccaaacatttcagcatccgcaatggtcgaggtccccaattcaaatcat |
20892189 |
T |
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