View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18244_low_14 (Length: 416)
Name: NF18244_low_14
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 7554100 - 7554353
Alignment:
| Q |
18 |
ataaaagaaacactacagagaatacaaagttataacattcttatcataactgacattaaaaaagtaaattctaacagaagtaaatctgtnnnnnnngaaa |
117 |
Q |
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| T |
7554100 |
ataaaagaaacactacagagaatacaaagttataacattcttatcataactgacattaaaaaagtaaattctaacagaagtaaatctgtaaaaaaagaaa |
7554199 |
T |
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| Q |
118 |
catttgacattttagagtttgaacttcggcagagcatttcagaatactagtgaacaacacatccatggcgcgagtagagttccttcttttcgtaactcca |
217 |
Q |
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| T |
7554200 |
aatttgacattttagagtttgaacttcggcagagcatttcagaatactagtgaacaacacatccatggcgcgagtagagttccttcttttcgtaactcca |
7554299 |
T |
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| Q |
218 |
atcccatgcaggcggagcttctatccttctcaatgatggccttgaaactaccat |
271 |
Q |
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| T |
7554300 |
atcccatgcaggcggagcttctatccttctcaatgatggccttgaaactaccat |
7554353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 244 - 400
Target Start/End: Original strand, 14002891 - 14003047
Alignment:
| Q |
244 |
ttctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccattcaaacttatctctctgagttgcgtgcagttgtt |
343 |
Q |
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| T |
14002891 |
ttctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccattcaaacttatctctctgagttgcgtgcagttgtt |
14002990 |
T |
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| Q |
344 |
taccacgtgcatgactcccttgtctgtgatataatcacatcttagcagtaccagttg |
400 |
Q |
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| T |
14002991 |
taccacgtgcatgactcccttgtctgtgatataatcacatcttagcagtaccagttg |
14003047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 244 - 400
Target Start/End: Complemental strand, 5767916 - 5767760
Alignment:
| Q |
244 |
ttctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccattcaaacttatctctctgagttgcgtgcagttgtt |
343 |
Q |
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| T |
5767916 |
ttctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccatccaaatttatctctctgagttgtgtgcagttgtt |
5767817 |
T |
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| Q |
344 |
taccacgtgcatgactcccttgtctgtgatataatcacatcttagcagtaccagttg |
400 |
Q |
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| T |
5767816 |
taccacgtgcatgactcccttgtctgtgatataatcacatcttagcagtaccagttg |
5767760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 372
Target Start/End: Complemental strand, 55505371 - 55505238
Alignment:
| Q |
239 |
tatccttctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccattcaaacttatctctctgagttgcgtgcag |
338 |
Q |
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|||| ||||||||||||||||||||| |||||| ||| ||||||| ||| ||||| ||| ||| || ||||| | |||||||| ||||| |||||| |
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| T |
55505371 |
tatctttctcaatgatggccttgaaaataccattgagtcaacaacactagtatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcag |
55505272 |
T |
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| Q |
339 |
ttgtttaccacgtgcatgactcccttgtctgtga |
372 |
Q |
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| T |
55505271 |
ttttctaacacgtgtttcactcccttctctgtga |
55505238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 372
Target Start/End: Complemental strand, 51114041 - 51113914
Alignment:
| Q |
245 |
tctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccattcaaacttatctctctgagttgcgtgcagttgttt |
344 |
Q |
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| T |
51114041 |
tctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcttagttttgtgcatttttct |
51113942 |
T |
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| Q |
345 |
accacgtgcatgactcccttgtctgtga |
372 |
Q |
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| T |
51113941 |
accacatgcttcactcccttctctgtga |
51113914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 514995 - 514950
Alignment:
| Q |
238 |
ctatccttctcaatgatggccttgaaactaccatggaggcaacaac |
283 |
Q |
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| T |
514995 |
ctatctttctcaatgatggccttgaaaataccattggggcaacaac |
514950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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