View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18244_low_16 (Length: 340)
Name: NF18244_low_16
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_low_16 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 22)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 5175347 - 5175656
Alignment:
| Q |
1 |
aaaaataagctatgatggtttagacaatgattaccagaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacat |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5175347 |
aaaaataagctatgatggtttagacgatgattaccagaaatcaatattcctcgacgtagcttgtttctttattgggatggacagaaatgatgttatacat |
5175446 |
T |
|
| Q |
101 |
atattaaatggctgcggaatttttgcagaagatggaataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatg |
200 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||| ||||| ||| |||||||||| ||||| ||||| ||||||||||||| ||| |||| |
|
|
| T |
5175447 |
atattaaatggctgtggattttttgcagaagatggaataagtgtcctggttgagcgaagcttagtaacggttgataataaaaacaagcttggaatgcata |
5175546 |
T |
|
| Q |
201 |
atttgttccgggatatggggagagaaatcatttgtgataaaccacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatgttgatggtgt |
300 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| |||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
5175547 |
atttgttgcgggatatgggaagagaaatcatttgtaataaaccacgaatggagcctgaggagcgtagcaggttgtggtttcttgaggatgttgatgatgt |
5175646 |
T |
|
| Q |
301 |
attagcagga |
310 |
Q |
| |
|
||||||||| |
|
|
| T |
5175647 |
gttagcagga |
5175656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 5277174 - 5277483
Alignment:
| Q |
1 |
aaaaataagctatgatggtttagacaatgattaccagaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacat |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5277174 |
aaaaataagctatgatggtttagacgatgattaccagaaatcaatattcctcgacgtagcttgtttctttattgggatggacagaaatgatgttatacat |
5277273 |
T |
|
| Q |
101 |
atattaaatggctgcggaatttttgcagaagatggaataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatg |
200 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| ||||||||||||| ||| |||| |
|
|
| T |
5277274 |
atattaaatggctgtggattttttgcagaagatggaataagtgtccttgttgagcgaagcttagtaacggttgataataaaaacaagcttggaatgcata |
5277373 |
T |
|
| Q |
201 |
atttgttccgggatatggggagagaaatcatttgtgataaaccacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatgttgatggtgt |
300 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| |||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
5277374 |
atttgttgcgggatatgggaagagaaatcatttgtaataaaccacgaatggagcctgaggagcgtagcaggttgtggtttcttgaggatgttgatgatgt |
5277473 |
T |
|
| Q |
301 |
attagcagga |
310 |
Q |
| |
|
|||| |||| |
|
|
| T |
5277474 |
gttagtagga |
5277483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 5431888 - 5432194
Alignment:
| Q |
1 |
aaaaataagctatgatggtttagacaatgattaccagaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacat |
100 |
Q |
| |
|
||||||||||||||||||||||||| || | | |||||||| |||||| || ||||||||||||||||||||||| | ||| |||||||||||||||||| |
|
|
| T |
5431888 |
aaaaataagctatgatggtttagacgataaatcccagaaagcaatattccttgacatagcttgtttctttattggtaaggagcgaaatgatgttatacat |
5431987 |
T |
|
| Q |
101 |
atattaaatggctgcggaatttttgcagaagatggaataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatg |
200 |
Q |
| |
|
||| |||||||||| || | ||||| |||||||||||||| ||||||||| |||| ||||| ||| ||||||| || | |||||||| ||| ||||| |
|
|
| T |
5431988 |
atactaaatggctgtcgattgtttgctgaagatggaataagagtccttgttgagcgtagcttagtatatattgatgatgataacaagcttggaatgcatg |
5432087 |
T |
|
| Q |
201 |
atttgttccgggatatggggagagaaatcatttgtgataaaccacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatgttgatggtgt |
300 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| |||| |||| ||| || || ||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
5432088 |
atttgttgcgggatatgggaagagaaatcatttgtaataatccaccaaaggatcctgaggagcatagcaggttgtggcttcctgaggatgttgatggtgt |
5432187 |
T |
|
| Q |
301 |
attagca |
307 |
Q |
| |
|
||||||| |
|
|
| T |
5432188 |
attagca |
5432194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 4 - 291
Target Start/End: Original strand, 5368944 - 5369231
Alignment:
| Q |
4 |
aataagctatgatggtttagacaatgattaccagaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatata |
103 |
Q |
| |
|
|||||||||||||| |||| | ||||||| |||||| |||||| || || ||||||||||||||||||||| ||||||||||||||||| || |||| |
|
|
| T |
5368944 |
aataagctatgatgctttaaatgatgattatgagaaagaaatattccttgatgtagcttgtttctttattgggaaggaccgaaatgatgttacacttata |
5369043 |
T |
|
| Q |
104 |
ttaaatggctgcggaatttttgcagaagatggaataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatt |
203 |
Q |
| |
|
||| |||| || ||| ||||||| ||| ||||||||| |||||||| ||||||| | || ||| ||||| |||| ||||| || ||| |||||||| |
|
|
| T |
5369044 |
ttagatggatgtggactttttgctgaaattggaataagtatccttgttgagcgaagtcttgtcactgttgatgataagaacaaacttggaatgcatgatt |
5369143 |
T |
|
| Q |
204 |
tgttccgggatatggggagagaaatcatttgtgataaaccacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatgt |
291 |
Q |
| |
|
|||| || |||||||| |||||||||||| ||| ||| ||| | |||||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
5369144 |
tgttgcgagatatgggaagagaaatcattcgtgggaaatcaccagaagagctcgaggagcgttgcaggttgtggtttcatgaggatgt |
5369231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 36 - 290
Target Start/End: Complemental strand, 5068560 - 5068306
Alignment:
| Q |
36 |
agaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatgg |
135 |
Q |
| |
|
|||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| ||||||| ||| ||| |
|
|
| T |
5068560 |
agaaagaaatattccttgacatagcttgtttctttattgggatggaccgaaatgatgttacacttatattaaatggatgcggactttttgctgaaattgg |
5068461 |
T |
|
| Q |
136 |
aataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagagaaatcatttgt |
235 |
Q |
| |
|
|||||| |||||||| ||||||| |||| | | ||||| | || ||||| || ||| |||||||||||| || |||||||| ||||||||| || || |
|
|
| T |
5068460 |
aataagtatccttgttgagcgaagtctggttattgttgataaaaagaacaaacttggaatgcatgatttgttgcgagatatgggaagagaaatcgttcgt |
5068361 |
T |
|
| Q |
236 |
gataaaccacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatg |
290 |
Q |
| |
|
| ||| ||| | |||||| ||||||| | |||||||||||||||| ||||||| |
|
|
| T |
5068360 |
gggaaatcaccagaagagctcgaggagcgttgcaggttgtggtttcaggaggatg |
5068306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 36 - 291
Target Start/End: Complemental strand, 5104358 - 5104103
Alignment:
| Q |
36 |
agaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatgg |
135 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |||| || ||||||| |||| || ||| ||||||||||| ||| |
|
|
| T |
5104358 |
agaaagaaatattcctcgatgtagcttgtttctttattgggatggaccgaaatgacgttacacttatattagatggatgtggactttttgcagaaattgg |
5104259 |
T |
|
| Q |
136 |
aataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagagaaatcatttgt |
235 |
Q |
| |
|
|||||| |||||||| ||||||| | ||||| ||||| |||| ||||| || ||| |||||||||||| || |||||||| |||||||||||| || |
|
|
| T |
5104258 |
aataagtatccttgttgagcgaagtcttataactgttgatgataagaacaaacttggaatgcatgatttgttgcgagatatgggaagagaaatcattcgt |
5104159 |
T |
|
| Q |
236 |
gataaaccacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatgt |
291 |
Q |
| |
|
|| ||| ||| | | |||| ||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
5104158 |
gagaaatcaccagaggagctcgaggagcgttgcaggttgtggtttcatgacgatgt |
5104103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 36 - 291
Target Start/End: Original strand, 5424269 - 5424524
Alignment:
| Q |
36 |
agaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatgg |
135 |
Q |
| |
|
|||||| |||||| || ||||||||||||||||||||||| |||||| |||||||||||| || |||||||||||| || ||| ||||||| ||| ||| |
|
|
| T |
5424269 |
agaaagaaatattccttgacatagcttgtttctttattggaatggacagaaatgatgttacacttatattaaatggatgtggactttttgctgaaattgg |
5424368 |
T |
|
| Q |
136 |
aataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagagaaatcatttgt |
235 |
Q |
| |
|
|||||| |||||||| |||| || | || ||| ||||| |||| ||||| || ||| |||||||||||| || |||||||| |||||||||||| || |
|
|
| T |
5424369 |
aataagtatccttgttgagcggagtcttgtcactgttgatgataataacaaacttggaatgcatgatttgttgcgagatatgggaagagaaatcattcgt |
5424468 |
T |
|
| Q |
236 |
gataaaccacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatgt |
291 |
Q |
| |
|
| ||| ||| | |||||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
5424469 |
gggaaatcaccagaagagctcgaggagcgttgcaggttgtggtttcatgaggatgt |
5424524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 36 - 280
Target Start/End: Complemental strand, 5183438 - 5183194
Alignment:
| Q |
36 |
agaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatgg |
135 |
Q |
| |
|
|||||| |||||| || |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||| | ||||||||||| ||| |
|
|
| T |
5183438 |
agaaagaaatattccttgacatagcttgtttctttattgggatggacaggaatgatgttatacatatattaaatggtagcgaattttttgcagaaattgg |
5183339 |
T |
|
| Q |
136 |
aataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagagaaatcatttgt |
235 |
Q |
| |
|
| |||| ||||||||| || ||||| | |||||| ||||| ||| ||||| || || |||||||||| | | |||||||| ||||||||| || || |
|
|
| T |
5183338 |
agtaagtgtccttgttgagagaagccttgtaactgttgatgataggaacaaactgcaaatgcatgatttgctaagagatatgggaagagaaatcgttcgt |
5183239 |
T |
|
| Q |
236 |
gataaaccacgaaaagagccagaggagcatagcaggttgtggttt |
280 |
Q |
| |
|
|| || ||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
5183238 |
gagaagtcaccaaaagagcctgaggagcgtagcaggttgtggttt |
5183194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 36 - 291
Target Start/End: Original strand, 5094557 - 5094812
Alignment:
| Q |
36 |
agaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatgg |
135 |
Q |
| |
|
|||||| |||||| || || |||||||||||||||||||||||||||||||||| |||| || |||||||||||| || ||| ||||||| ||| ||| |
|
|
| T |
5094557 |
agaaagaaatattccttgatgtagcttgtttctttattgggatggaccgaaatgacgttacacttatattaaatggatgtggactttttgctgaaattgg |
5094656 |
T |
|
| Q |
136 |
aataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagagaaatcatttgt |
235 |
Q |
| |
|
|||||| |||||||| |||| || | |||||| ||||| |||| ||||| || ||| |||||||||||| || |||||||| |||||||||||| || |
|
|
| T |
5094657 |
aataagtatccttgttgagcgtagtcttgtaactgttgatgataagaacaaacttggaatgcatgatttgttgcgagatatgggaagagaaatcattcgt |
5094756 |
T |
|
| Q |
236 |
gataaaccacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatgt |
291 |
Q |
| |
|
|| ||| ||| | | |||| ||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
5094757 |
gagaaatcaccagaggagctcgaggagcgttgcaggttgtggtttcatgatgatgt |
5094812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 36 - 291
Target Start/End: Original strand, 5342210 - 5342465
Alignment:
| Q |
36 |
agaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatgg |
135 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||||| ||| |
|
|
| T |
5342210 |
agaaagaaatatttcttgacatagcttgtttctttattgggatggaccgaaatgatgtcatacaaatattaaatggctgtggactttttgcagaaattgg |
5342309 |
T |
|
| Q |
136 |
aataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagagaaatcatttgt |
235 |
Q |
| |
|
|||||| || |||||| |||||||| | |||| | |||| || ||||| || ||| ||| |||||| | || |||||||| ||||||||| || || |
|
|
| T |
5342310 |
aataagtgttcttgttgagcgaagccttgtaattgttgacagcaagaacaaacttggaatgcacgatttgctgcgagatatgggaagagaaatcgttcgt |
5342409 |
T |
|
| Q |
236 |
gataaaccacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatgt |
291 |
Q |
| |
|
|| ||| ||| ||| |||| | ||||| |||||||||||| ||| | |||||||| |
|
|
| T |
5342410 |
gagaaatcaccaaaggagcttggggagcgtagcaggttgtgctttaaggaggatgt |
5342465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 36 - 280
Target Start/End: Original strand, 5395559 - 5395803
Alignment:
| Q |
36 |
agaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatgg |
135 |
Q |
| |
|
|||||| |||||| || |||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| ||| | ||||||||||| ||| |
|
|
| T |
5395559 |
agaaagaaatattccttgacatagcttgtttttttattgggatggacaggaatgatgttatacatatattaaatggtagcgaactttttgcagaaattgg |
5395658 |
T |
|
| Q |
136 |
aataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagagaaatcatttgt |
235 |
Q |
| |
|
| |||| ||||||||| |||||||| | |||||| ||||| ||| |||| || || |||||||||| | | |||||||| ||||||||| || || |
|
|
| T |
5395659 |
agtaagtgtccttgttgagcgaagccttgtaactgttgatgataggaacagacttgcaatgcatgatttgctaagagatatgggaagagaaatcgttcgt |
5395758 |
T |
|
| Q |
236 |
gataaaccacgaaaagagccagaggagcatagcaggttgtggttt |
280 |
Q |
| |
|
|| || ||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
5395759 |
gagaagtcaccaaaagagcccgaggagcgtagcaggttgtggttt |
5395803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 5382130 - 5382419
Alignment:
| Q |
1 |
aaaaataagctatgatggtttagacaatgattaccagaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacat |
100 |
Q |
| |
|
|||||||||||||||||||||| | | ||| | | |||| |||||| || ||||||||||||||||||||||| ||||||||||| ||||||| ||| |
|
|
| T |
5382130 |
aaaaataagctatgatggtttaaatgacgatagcgaaaaagaaatattccttgacatagcttgtttctttattgg-atggaccgaaacgatgttacacaa |
5382228 |
T |
|
| Q |
101 |
atattaaatggctgcggaatttttgcagaagatggaataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatg |
200 |
Q |
| |
|
||||||||||| || || ||||||| || |||||||| ||||||||| || ||||| | |||||| | ||| |||| || | || ||| ||||| |
|
|
| T |
5382229 |
atattaaatgggtgtgggctttttgctgatatcggaataagtgtccttgttgagagaagccttgtaactgtcgatgataagaatacacttggaatgcatg |
5382328 |
T |
|
| Q |
201 |
atttgttccgggatatggggagagaaatcatttgtgataaaccacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatgt |
291 |
Q |
| |
|
||||||| |||||||||| |||||||||||| |||| ||| ||| ||| || || ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
5382329 |
atttgttaagggatatgggaagagaaatcattcgtgaaaaatcaccaaaggatcctgaggagcgtagcaggttatggtttcatgaggatgt |
5382419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 5356137 - 5355912
Alignment:
| Q |
1 |
aaaaataagctatgatggtttagacaatgattaccagaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacat |
100 |
Q |
| |
|
|||||||||||||||||||||| | ||||| | |||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||| || || |
|
|
| T |
5356137 |
aaaaataagctatgatggtttaaatgatgatgccgagaaagaaatatttcttgacatagcttgtttctttattgggatcgaccgaaatgatgctacacta |
5356038 |
T |
|
| Q |
101 |
atattaaatggctgcggaatttttgcagaagatggaataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatg |
200 |
Q |
| |
|
||||||||||| || ||| ||| ||| ||| ||||||||| | |||||| |||||||| | |||||| ||||| |||| || | ||| |||| ||||| |
|
|
| T |
5356037 |
atattaaatggatgtggactttatgctgaaattggaataagtattcttgttgagcgaagccttgtaactgttgatgataagaataggcttagaatgcatg |
5355938 |
T |
|
| Q |
201 |
atttgttccgggatatggggagagaa |
226 |
Q |
| |
|
||||| | || |||||||| |||||| |
|
|
| T |
5355937 |
atttgctacgagatatgggaagagaa |
5355912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 5075252 - 5075016
Alignment:
| Q |
1 |
aaaaataagctatgatggtttagacaatgattaccagaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacat |
100 |
Q |
| |
|
|||||||||||||||||||||| || |||| |||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||| || | |
|
|
| T |
5075252 |
aaaaataagctatgatggtttaaacgatgacactgagaagaaaatattcctcgacatagcttgtttctttattgggatggatcgaaatgatgttacactt |
5075153 |
T |
|
| Q |
101 |
atattaaatggctgcggaatttttgcagaagatggaataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatg |
200 |
Q |
| |
|
||||||||||| || | | ||||||| ||| |||| |||| || |||||| |||||||| | |||||| | ||| ||| |||||||| ||| ||||| |
|
|
| T |
5075152 |
atattaaatggatgtgaactttttgctgaaattggagtaagtgtacttgttgagcgaagccttgtaactgtcgatgataggaacaagcttggaatgcatg |
5075053 |
T |
|
| Q |
201 |
atttgttccgggatatggggagagaaatcatttgtga |
237 |
Q |
| |
|
||||| | || |||||||| |||||||||||| |||| |
|
|
| T |
5075052 |
atttgctgcgtgatatgggaagagaaatcattcgtga |
5075016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 291
Target Start/End: Original strand, 5348891 - 5349148
Alignment:
| Q |
36 |
agaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatgg |
135 |
Q |
| |
|
|||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| || | | ||||||| ||| ||| |
|
|
| T |
5348891 |
agaaagaaatattccttgacatagcttgtttctttattgggatggaccgaaatgatgttacacttatattaaatggatgtgaactttttgctgaaattgg |
5348990 |
T |
|
| Q |
136 |
aataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagc--atgatttgttccgggatatggggagagaaatcattt |
233 |
Q |
| |
|
|||||| || ||||| | ||||| | || ||| ||||| |||| ||||| || ||| || |||||||||| || |||||||| |||||||||||| |
|
|
| T |
5348991 |
aataagtatctttgttgatcgaagtcttgtcactgttgatgataagaacaaacttggaatgcatatgatttgttgcgagatatgggaagagaaatcattc |
5349090 |
T |
|
| Q |
234 |
gtgataaaccacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatgt |
291 |
Q |
| |
|
||| ||| ||| | |||||| ||||||| | ||||||| |||||||| |||||||| |
|
|
| T |
5349091 |
gtgggaaatcaccagaagagctcgaggagcgttgcaggttctggtttcaggaggatgt |
5349148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 5148444 - 5148341
Alignment:
| Q |
37 |
gaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatgga |
136 |
Q |
| |
|
||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | ||| ||||||| |||| |
|
|
| T |
5148444 |
gaaagaaatattccttgacatagcttgtttctttattgggatggaccgaaatgatgtcatacatatattaaatggctgtgaactttatgcagaaattgga |
5148345 |
T |
|
| Q |
137 |
ataa |
140 |
Q |
| |
|
|||| |
|
|
| T |
5148344 |
ataa |
5148341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 291
Target Start/End: Complemental strand, 5158987 - 5158732
Alignment:
| Q |
36 |
agaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatgg |
135 |
Q |
| |
|
|||||| |||||| || || |||||||||||||||| ||||||||||||||||| |||| || |||||||||||| || | | |||||| ||| ||| |
|
|
| T |
5158987 |
agaaagaaatattccttgatgtagcttgtttctttatagggatggaccgaaatgacgttacacttatattaaatggatgtgaactttttggtgaaattgg |
5158888 |
T |
|
| Q |
136 |
aataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagagaaatcatttgt |
235 |
Q |
| |
|
|||||| |||||||| |||| || | || ||| ||||| ||| ||||| || ||| |||||||||||| || |||||||| |||||||||||| || |
|
|
| T |
5158887 |
aataagcatccttgttgagcgtagtcttgttactgttgatggtaagaacaaacttggaatgcatgatttgttgcgagatatgggaagagaaatcattcgt |
5158788 |
T |
|
| Q |
236 |
gataaaccacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatgt |
291 |
Q |
| |
|
|| ||| ||| | | ||| ||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
5158787 |
gagaaatcaccagaggagatcgaggagcgttgcaggttgtggtttcatgacgatgt |
5158732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 43 - 228
Target Start/End: Complemental strand, 5261625 - 5261440
Alignment:
| Q |
43 |
aatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatggaataagg |
142 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| ||| ||| || ||||||| ||||||||| |
|
|
| T |
5261625 |
aatatttcttgacatagcttgtttcttaattggaatggaccgaaatgatgttatactcgtattaaatgactgtggacttcatgcagaaattggaataagc |
5261526 |
T |
|
| Q |
143 |
gtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagagaaat |
228 |
Q |
| |
|
||||||||| || ||||| | || | | ||||| |||| |||| ||| ||| ||||| |||||| || |||||||| |||||||| |
|
|
| T |
5261525 |
gtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgttgcgagatatgggaagagaaat |
5261440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 5691597 - 5691404
Alignment:
| Q |
36 |
agaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatgg |
135 |
Q |
| |
|
|||||| |||||| || ||| | |||||||||||||||||||||| |||||||||||| ||||||||||| |||| || | ||| ||||| | ||| |
|
|
| T |
5691597 |
agaaagaaatattccttgacgtggcttgtttctttattgggatggttcgaaatgatgttgtacatatattagatggttgtgatctttatgcaggaattgg |
5691498 |
T |
|
| Q |
136 |
aataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagagaaatc |
229 |
Q |
| |
|
||||| |||||||| |||||||| | || ||| ||||| ||| |||| ||| |||| |||||||||||| || |||||||| ||||||||| |
|
|
| T |
5691497 |
aataaatgtccttgtggagcgaagccttgtgactgttgatgataggaacaggcttagaatgcatgatttgttgcgagatatgggaagagaaatc |
5691404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 5445593 - 5445708
Alignment:
| Q |
36 |
agaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatgg |
135 |
Q |
| |
|
|||||| |||||| || |||| |||||||||||| | |||||||||| |||||||||||||| | ||||||||| |||||| ||| ||||||| ||| |
|
|
| T |
5445593 |
agaaagaaatattccttcacattgcttgtttctttgtcgggatggaccaaaatgatgttatacttttattaaatgattgcggactttctgcagaaattgg |
5445692 |
T |
|
| Q |
136 |
aataagggtccttgtt |
151 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
5445693 |
aataagtgtccttgtt |
5445708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 237
Target Start/End: Complemental strand, 5133391 - 5133190
Alignment:
| Q |
36 |
agaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatgg |
135 |
Q |
| |
|
|||||| |||||| || ||||||||||||| ||||||| |||||| ||||||||||| ||||||||||||||| || ||| ||||||| ||| ||| |
|
|
| T |
5133391 |
agaaagaaatattccttaacatagcttgtttttttattgatatggacacaaatgatgttacacatatattaaatggttgtggactttttgccgaaattgg |
5133292 |
T |
|
| Q |
136 |
aataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagagaaatcatttgt |
235 |
Q |
| |
|
|||||| | ||| || || ||||| | |||||| ||||| ||| ||| ||| ||| |||||||||||| | |||||||| |||||||| ||| || |
|
|
| T |
5133291 |
aataagtattcttattgagagaagccttgtaactgttgatgctaaggacaggcttggaatgcatgatttgttgagagatatgggaagagaaattattcgt |
5133192 |
T |
|
| Q |
236 |
ga |
237 |
Q |
| |
|
|| |
|
|
| T |
5133191 |
ga |
5133190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 5285609 - 5285507
Alignment:
| Q |
58 |
agcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatggaataagggtccttgttaagcga |
157 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||||||||||||| ||||||||| ||| ||| ||| ||||||| ||||||||| ||||||||| || || |
|
|
| T |
5285609 |
agcttgtttcttaattggaatggacagaaatgatgttatactcgtattaaatgactgtggactttatgcagaaattggaataagcgtccttgttgagaga |
5285510 |
T |
|
| Q |
158 |
agc |
160 |
Q |
| |
|
||| |
|
|
| T |
5285509 |
agc |
5285507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 21)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 4358891 - 4359181
Alignment:
| Q |
1 |
aaaaataagctatgatggtttagacaatgattaccagaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacat |
100 |
Q |
| |
|
||||||||| |||||||||||| | ||||| ||||||| |||||| || |||||| |||||||||||||||| |||||||| ||||||||||| | | |
|
|
| T |
4358891 |
aaaaataagttatgatggtttaaatgatgatacacagaaagaaatattccttgacatatcttgtttctttattggaatggaccggaatgatgttattcgt |
4358990 |
T |
|
| Q |
101 |
atattaaatggctgcggaatttttgcagaagatggaataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatg |
200 |
Q |
| |
|
|||||| ||||||| ||| ||||||||| | ||||||||| ||||||||| || ||||| | ||||| ||||| |||| |||||||| | | ||||| |
|
|
| T |
4358991 |
atattagatggctgtggattttttgcaggaattggaataagtgtccttgttgagagaagccttgtaacggttgatgataagaacaagcttggcatgcatg |
4359090 |
T |
|
| Q |
201 |
atttgttccgggatatggggagagaaatcatttgtgataaaccacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatgt |
291 |
Q |
| |
|
||||| |||| |||||||| |||||||||||| |||| ||| ||| ||| ||||| ||||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
4359091 |
atttgctccgagatatgggaagagaaatcattcgtgagaaatcaccaaaggagcctgaggaacatagtaggctgtggtttcatgaggatgt |
4359181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 4334033 - 4334323
Alignment:
| Q |
1 |
aaaaataagctatgatggtttagacaatgattaccagaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacat |
100 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4334033 |
aaaaataagctatgatggtttaaatgatgatactgagaaatcaatattccttgacatagcttgtttctttattgggatggaccgaaatgatgttattcaa |
4334132 |
T |
|
| Q |
101 |
atattaaatggctgcggaatttttgcagaagatggaataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatg |
200 |
Q |
| |
|
|||||||||||||| ||| |||| || ||| ||||||||| ||||||||| |||||||| | ||||| | ||| ||| |||||||| | | ||||| |
|
|
| T |
4334133 |
atattaaatggctgtggacttttcgctgaaattggaataagtgtccttgttgagcgaagccttgtaacggtcgatggtaagaacaagcttggcatgcatg |
4334232 |
T |
|
| Q |
201 |
atttgttccgggatatggggagagaaatcatttgtgataaaccacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatgt |
291 |
Q |
| |
|
||||| | || |||||||| |||||||||||| |||| ||| ||| || ||||| ||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
4334233 |
atttgcttcgagatatgggaagagaaatcattcgtgagaaatcaccaatggagcctgaggaacgtagtaggttgtggtttcatgaggatgt |
4334323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 4343422 - 4343706
Alignment:
| Q |
1 |
aaaaataagctatgatggtttagacaatgattaccagaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacat |
100 |
Q |
| |
|
|||||||||||| ||||||||| | ||||| ||||||| |||||| ||||||||| |||||||||||||||||||||| |||||||||||||| | | |
|
|
| T |
4343422 |
aaaaataagctacgatggtttaaatgatgatacacagaaagaaatattcctcgacatatcttgtttctttattgggatggatcgaaatgatgttattcgt |
4343521 |
T |
|
| Q |
101 |
atattaaatggctgcggaatttttgcagaagatggaataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatg |
200 |
Q |
| |
|
||| |||||||||| ||| |||| |||||| || ||||| ||||||||| || ||||| | |||| ||||| |||| |||||||| | | ||||| |
|
|
| T |
4343522 |
atactaaatggctgtggatttttcgcagaaatcggcataagtgtccttgttgagagaagccttgtaatggttgatgataagaacaagcttggcatgcatg |
4343621 |
T |
|
| Q |
201 |
atttgttccgggatatggggagagaaatcatttgtgataaaccacgaaaagagccagaggagcatagcaggttgtggtttcatga |
285 |
Q |
| |
|
||||| | || |||||||| |||||||||||| |||| ||| | | ||| ||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
4343622 |
atttgctgcgagatatgggaagagaaatcattcgtgagaaatcgccaaaggagcctgaggaacatagtaggttgtggtttcatga |
4343706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 43 - 291
Target Start/End: Complemental strand, 4125919 - 4125671
Alignment:
| Q |
43 |
aatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatggaataagg |
142 |
Q |
| |
|
|||||| || ||||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||||||| ||| |||| || ||| ||||||||| |
|
|
| T |
4125919 |
aatattccttgacatagcttgtttcttaattgggatggaccgaaatgatgttattcttattttaaatggctgtggacttttcgctgaaattggaataagt |
4125820 |
T |
|
| Q |
143 |
gtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagagaaatcatttgtgataaac |
242 |
Q |
| |
|
||||||||| | |||||| | ||||| ||||| |||| |||||||| | | |||||||||| | || |||||||| |||||||||||| |||| ||| |
|
|
| T |
4125819 |
gtccttgttgaacgaagccttgtaacagttgatgataagaacaagcttggcatgcatgatttgctgcgagatatgggaagagaaatcattcgtgagaaat |
4125720 |
T |
|
| Q |
243 |
cacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatgt |
291 |
Q |
| |
|
||| || ||||| ||||| | ||| |||||||||| |||||||||||| |
|
|
| T |
4125719 |
caccaatggagcctgaggaacgtagtaggttgtggtatcatgaggatgt |
4125671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 43 - 291
Target Start/End: Complemental strand, 4322581 - 4322333
Alignment:
| Q |
43 |
aatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatggaataagg |
142 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||| | ||| |||| |||||| ||||||||| |
|
|
| T |
4322581 |
aatattccttgacattgcttgtttctttattgggatggatcgaaatgatgtcattcatatattaaatggttctggatttttcgcagaaattggaataagt |
4322482 |
T |
|
| Q |
143 |
gtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagagaaatcatttgtgataaac |
242 |
Q |
| |
|
||||||||| || ||||| | ||||| ||||| |||| |||||||| | | |||||||||| | || |||||||| || ||||||||| |||| ||| |
|
|
| T |
4322481 |
gtccttgttgagagaagccttgtaacggttgatgataagaacaagcttggcatgcatgatttgctgcgagatatgggaagggaaatcattcgtgagaaat |
4322382 |
T |
|
| Q |
243 |
cacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatgt |
291 |
Q |
| |
|
||| || ||||| ||||| | ||| ||||||||||||||||| ||||| |
|
|
| T |
4322381 |
caccaatggagcctgaggaacgtagtaggttgtggtttcatgatgatgt |
4322333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 4135302 - 4135073
Alignment:
| Q |
2 |
aaaataagctatgatggtttagacaatgattaccagaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacata |
101 |
Q |
| |
|
||||||||||||||||||||| | |||| | ||| || ||||| || ||||| |||| |||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
4135302 |
aaaataagctatgatggtttaaatgatgacaccgagagagatatattccttgacattgcttttttctttattgggatggaccgaaacgatgttatggata |
4135203 |
T |
|
| Q |
102 |
tattaaatggctgcggaatttttgcagaagatggaataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatga |
201 |
Q |
| |
|
|||||||||| || || ||||||| ||| |||||||| ||||||||| |||||||| | |||||||||||| ||||||||||||| ||| |||||| |
|
|
| T |
4135202 |
tattaaatggttgtggtctttttgctgaaatcggaataagtgtccttgttgagcgaagccttgtaactattgatgataaaaacaagcttggaatgcatga |
4135103 |
T |
|
| Q |
202 |
tttgttccgggatatggggagagaaatcat |
231 |
Q |
| |
|
|||| | || |||||||| ||||| ||||| |
|
|
| T |
4135102 |
tttgctacgagatatgggaagagagatcat |
4135073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 43 - 291
Target Start/End: Original strand, 4351752 - 4352000
Alignment:
| Q |
43 |
aatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatggaataagg |
142 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| ||||| || |||| ||||| |||||||| | |
|
|
| T |
4351752 |
aatattccttgacatagcttgtttctttattgggatagacagaaatgatgttatttgtatattaaatagctgcagacttttcacagaaattggaataaag |
4351851 |
T |
|
| Q |
143 |
gtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagagaaatcatttgtgataaac |
242 |
Q |
| |
|
|| |||||| || ||||| | |||| ||||| ||||||||||||| | | |||||||||| | || |||||||| |||||||||||| |||| ||| |
|
|
| T |
4351852 |
gttcttgttgagagaagccttgtaatcgttgatgataaaaacaagcttggcatgcatgatttgctgcgagatatgggaagagaaatcattcgtgagaaat |
4351951 |
T |
|
| Q |
243 |
cacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatgt |
291 |
Q |
| |
|
||| ||| ||||| ||||| | ||| |||||||||||||| | |||||| |
|
|
| T |
4351952 |
caccaaaggagcctgaggaacgtagtaggttgtggtttcacggggatgt |
4352000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 56 - 207
Target Start/End: Complemental strand, 6499800 - 6499649
Alignment:
| Q |
56 |
atagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatggaataagggtccttgttaagc |
155 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| || ||| ||||||| || |||||| | |||||||| ||| |
|
|
| T |
6499800 |
atagcttgcttctttattgggatggaccgaaatgatgtaatacaaatattaaatgggtgtggattttttgctgatattggaattaaagtccttgtagagc |
6499701 |
T |
|
| Q |
156 |
gaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgtt |
207 |
Q |
| |
|
||||| | ||| |||||| ||| |||||||| |||| |||||||||||| |
|
|
| T |
6499700 |
gaagccttttaattattgacaataggaacaagcttagaatgcatgatttgtt |
6499649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 25568518 - 25568649
Alignment:
| Q |
44 |
atatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatggaataaggg |
143 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| ||| ||||||| |||| ||||||||||| ||||| || | | ||| ||||||| |||||||| | |
|
|
| T |
25568518 |
atattcctcaacatagcttgtttctttattgggttggtccgaaataatgtaatacatatattgaatggttgtgaactttatgcagaaattggaataaacg |
25568617 |
T |
|
| Q |
144 |
tccttgttaagcgaagcttggtaactattgat |
175 |
Q |
| |
|
|||||||| |||||||| | || ||||||||| |
|
|
| T |
25568618 |
tccttgttgagcgaagccttgtgactattgat |
25568649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 207
Target Start/End: Complemental strand, 6547369 - 6547205
Alignment:
| Q |
43 |
aatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatggaataagg |
142 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| || || ||||||| || |||||| | |
|
|
| T |
6547369 |
aatattccttgatatagcttgtttctttattgggatggacaaaaatgatgcaatacaaatattaaatgggtgtagattttttgctgatattggaattaaa |
6547270 |
T |
|
| Q |
143 |
gtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgtt |
207 |
Q |
| |
|
|||||||| |||||||| | |||||| |||| ||| |||||||| |||| |||||||||||| |
|
|
| T |
6547269 |
gtccttgtagagcgaagccttgtaactgttgacaataggaacaagcttagaatgcatgatttgtt |
6547205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 6834669 - 6834737
Alignment:
| Q |
43 |
aatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatgg |
111 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||| ||||||||| || || ||||||||||| |
|
|
| T |
6834669 |
aatatttctcgatatagcctgtttctttattgggatggaccaaaatgatgtaattcaaatattaaatgg |
6834737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 6756966 - 6757049
Alignment:
| Q |
43 |
aatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgc |
126 |
Q |
| |
|
|||||| || || |||||||||||||||||||||| |||| |||||||||| ||||| ||||||||||| || ||| ||||||| |
|
|
| T |
6756966 |
aatattccttgatatagcttgtttctttattgggaaggacagaaatgatgtaatacaaatattaaatgggtgtggattttttgc |
6757049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 6814275 - 6814438
Alignment:
| Q |
43 |
aatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatggaataagg |
142 |
Q |
| |
|
|||||| || || |||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| || ||| |||||| || |||||| | |
|
|
| T |
6814275 |
aatattccttgatatagcttgtttctttattgggagggaccgaaatgatgtaatacgaatattaaatgggtgtggatattttgctgatattggaattaaa |
6814374 |
T |
|
| Q |
143 |
gtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgt |
206 |
Q |
| |
|
||||||||| ||||| | | |||||| |||| ||| |||||||| |||| ||||||||||| |
|
|
| T |
6814375 |
gtccttgttgagcgagcccttgtaactgttgacaataggaacaagcttagaatgcatgatttgt |
6814438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 207
Target Start/End: Original strand, 6649572 - 6649720
Alignment:
| Q |
59 |
gcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatggaataagggtccttgttaagcgaa |
158 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||| ||||||||||| | ||| ||||||| || |||||| | |||||||| || ||| |
|
|
| T |
6649572 |
gcttgtttctttattggaatggaccgaaatgatgcaatacaaatattaaatgggagtggattttttgctgatattggaattaaagtccttgtagagagaa |
6649671 |
T |
|
| Q |
159 |
gcttggtaactattgattataaaaacaagctcagaaagcatgatttgtt |
207 |
Q |
| |
|
|| | |||||| |||| ||| |||||||| |||| |||||||||||| |
|
|
| T |
6649672 |
gccttgtaactgttgacaataggaacaagcttagaatgcatgatttgtt |
6649720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 6674506 - 6674574
Alignment:
| Q |
43 |
aatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatgg |
111 |
Q |
| |
|
|||||| || || |||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
6674506 |
aatattccttgatatagcttgcttctttattgggatggaccgaaatgatgcaatacaaatattaaatgg |
6674574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 6751348 - 6751416
Alignment:
| Q |
43 |
aatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatgg |
111 |
Q |
| |
|
|||||| || || ||||| |||||||||||||| ||||||||||||||||| || || ||||||||||| |
|
|
| T |
6751348 |
aatattccttgatatagcctgtttctttattggaatggaccgaaatgatgtaattcaaatattaaatgg |
6751416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 6794945 - 6795028
Alignment:
| Q |
43 |
aatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgc |
126 |
Q |
| |
|
||||||||| || |||||||| ||||||||||||||||| | |||||||| || || ||||||||||| || ||| ||||||| |
|
|
| T |
6794945 |
aatatttcttgatatagcttgcttctttattgggatggatcaaaatgatgcaattcaaatattaaatgggtgtggattttttgc |
6795028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 6589487 - 6589435
Alignment:
| Q |
59 |
gcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatgg |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| ||||| ||||||||||| |
|
|
| T |
6589487 |
gcttgtttctttattgggatggacaaaaaggatgtaatacagatattaaatgg |
6589435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 6726434 - 6726542
Alignment:
| Q |
43 |
aatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatggaataagg |
142 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||| ||| |||| || || ||||| ||||| || || ||||||| || |||||||| | |
|
|
| T |
6726434 |
aatatttcttgatatagcttgtttctttattgggatggacaaaaaggatgcgatccaaatattgaatgggtgtgggttttttgctgatgatggaattaaa |
6726533 |
T |
|
| Q |
143 |
gtccttgtt |
151 |
Q |
| |
|
||||||||| |
|
|
| T |
6726534 |
gtccttgtt |
6726542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 6771707 - 6771790
Alignment:
| Q |
43 |
aatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgc |
126 |
Q |
| |
|
|||||| || || ||||||||||||||||||||| | ||| ||| ||||| ||||| ||||||||||| || ||| ||||||| |
|
|
| T |
6771707 |
aatattccttgatatagcttgtttctttattggggtagacaaaaaggatgtaatacaaatattaaatgggtgtggattttttgc |
6771790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 6714328 - 6714380
Alignment:
| Q |
59 |
gcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatgg |
111 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| | ||||| ||||||||||| |
|
|
| T |
6714328 |
gcttgtttctttatcgggatggacaaaaatgatataatacaaatattaaatgg |
6714380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 36 - 280
Target Start/End: Complemental strand, 36215378 - 36215134
Alignment:
| Q |
36 |
agaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatgg |
135 |
Q |
| |
|
|||||| |||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | | ||||||||||| ||| |
|
|
| T |
36215378 |
agaaagaaatattccttgacatagcttgtttctttattgggatggacagaaatgatgttatacatatattaaatggaagtgaactttttgcagaaattgg |
36215279 |
T |
|
| Q |
136 |
aataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagagaaatcatttgt |
235 |
Q |
| |
|
| |||| || ||||| |||||||| | |||||| ||||| ||| |||| ||| ||| |||||||||| | || |||||||| ||||| |||||| || |
|
|
| T |
36215278 |
agtaagtgttcttgtagagcgaagccttgtaactgttgatgataggaacaggcttggaatgcatgatttgctgcgagatatgggaagagagatcattcgt |
36215179 |
T |
|
| Q |
236 |
gataaaccacgaaaagagccagaggagcatagcaggttgtggttt |
280 |
Q |
| |
|
|| ||| ||| ||| |||| ||||||| |||||||||||||||| |
|
|
| T |
36215178 |
gagaaatcaccaaaggagcttgaggagcgtagcaggttgtggttt |
36215134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 37 - 278
Target Start/End: Original strand, 8876318 - 8876561
Alignment:
| Q |
37 |
gaaagtaatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatata--ttaaatggctgcggaatttttgcagaagatg |
134 |
Q |
| |
|
||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || | | ||| | | ||| || |
|
|
| T |
8876318 |
gaaagaaatattccttgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattttaaatgggtgtgaactttatcctgaaattg |
8876417 |
T |
|
| Q |
135 |
gaataagggtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagagaaatcatttg |
234 |
Q |
| |
|
||||||| || |||||| | |||||| | ||||| || ||| | | || | ||| ||| |||||||||||| |||||||| |||||||||||| | |
|
|
| T |
8876418 |
gaataagtgttcttgttgaacgaagccttgtaaccatggatgaaaggaatatgcttggaatgcatgatttgttgacagatatgggaagagaaatcattcg |
8876517 |
T |
|
| Q |
235 |
tgataaaccacgaaaagagccagaggagcatagcaggttgtggt |
278 |
Q |
| |
|
||| ||| ||| ||| || || ||||||| |||||||||||||| |
|
|
| T |
8876518 |
tgagaaatcaccaaaggatcctgaggagcgtagcaggttgtggt |
8876561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 44 - 291
Target Start/End: Complemental strand, 10146 - 9899
Alignment:
| Q |
44 |
atatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagat-ggaataagg |
142 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| || ||| ||||||| || || |||||||| |
|
|
| T |
10146 |
atattccttgacatagcttgtttctttattgggatggaccgaaacgatgttacacaaatattaaatggatgtggactttttgc-taatatcggaataagt |
10048 |
T |
|
| Q |
143 |
gtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagagaaatcatttgtgataaac |
242 |
Q |
| |
|
||||||||| |||||||| | ||||| | ||| |||| || | || ||| ||||||||| || || |||||||| || ||||||||| |||| ||| |
|
|
| T |
10047 |
gtccttgttgagcgaagccttctaactgtcgatgataagaatacacttggaatgcatgatttattacgagatatgggaagggaaatcattcgtgaaaaat |
9948 |
T |
|
| Q |
243 |
cacgaaaagagccagaggagcatagcaggttgtggtttcatgaggatgt |
291 |
Q |
| |
|
||| || || || ||||| | ||| ||||| |||||||| |||||||| |
|
|
| T |
9947 |
caccaagggatcctgaggaccgtagtaggttatggtttcaagaggatgt |
9899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 43 - 224
Target Start/End: Complemental strand, 22585800 - 22585619
Alignment:
| Q |
43 |
aatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgcagaagatggaataagg |
142 |
Q |
| |
|
|||||| || |||||||||| |||||| ||||| |||||||||||||||||||||| |||||||||| ||| ||| || ||||||| ||||||||| |
|
|
| T |
22585800 |
aatattccttgacatagcttttttcttaattggaatggaccgaaatgatgttatactcatattaaatgactgtggacttcatgcagaaattggaataagc |
22585701 |
T |
|
| Q |
143 |
gtccttgttaagcgaagcttggtaactattgattataaaaacaagctcagaaagcatgatttgttccgggatatggggagag |
224 |
Q |
| |
|
||||||||| || ||||| | || | | ||||| |||| |||| ||| ||| |||||||||| | || |||||||| |||| |
|
|
| T |
22585700 |
gtccttgttgagagaagccttgtgagtgttgatgataagaacaggcttggaatgcatgatttgctgcgagatatgggaagag |
22585619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 11356 - 11273
Alignment:
| Q |
43 |
aatatttctcgacatagcttgtttctttattgggatggaccgaaatgatgttatacatatattaaatggctgcggaatttttgc |
126 |
Q |
| |
|
||||||||| || |||||||| ||||||||||||||||| | |||||||| || || ||||||||||| || ||| ||||||| |
|
|
| T |
11356 |
aatatttcttgatatagcttgcttctttattgggatggatcaaaatgatgcaattcaaatattaaatgggtgtggattttttgc |
11273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University