View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18244_low_2 (Length: 851)
Name: NF18244_low_2
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 804; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 804; E-Value: 0
Query Start/End: Original strand, 10 - 841
Target Start/End: Original strand, 55173361 - 55174192
Alignment:
| Q |
10 |
atcatcacaatgtcttccattgcatgcattgatctgccaaataaaattattaaactcatgatcacatcatgactgtcctcactttgttttatgcctaaaa |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55173361 |
atcaccacaatgtcttccattgcatgcattgatctgccaaataaaattattaaactcatgatcacatcatgactgtcctcactttgttttatgcctaaaa |
55173460 |
T |
|
| Q |
110 |
ttaattacttacgacgggatcgggagcatccttctgcttgcacatgatccacggaactcctatgtccaaggccactgccatatttgcggcccactgaaca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55173461 |
ttaattacttacgacgggatcgggagcatccttctgcttgcacatgatccacggaactccgatgtccaaggccactgccatatttgcggcccactgaaca |
55173560 |
T |
|
| Q |
210 |
taactatctcccttctcttcataagcaagttgaatatggttgtactcattttcaatttgtgccaagatgatggggcctccttggggagcaaagagcttct |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55173561 |
taactatctcccttctcttcataagcaagttgaatatggttgtactcattttcaatttgtgccaagatgatggggcctccttggggagcaaagagcttct |
55173660 |
T |
|
| Q |
310 |
catctttcatcatttggataatttttgacacgtatgctttcatgtgtttcttgtagggttcattgtcagagcggaatatgatccctggaacctctcttag |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55173661 |
catctttcatcatttggataatttttgacacgtatgctttcatgtatttcttgtagggttcattgtcagagcggaatatgatccctggaacctctcttag |
55173760 |
T |
|
| Q |
410 |
ccaatatggaagtcctctgatttatgaaagtattgagagggttagaaagaatagtaatgtataaagctaggttagaagaagcctcccacacatacatacc |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
55173761 |
ccaatatggaagtcctctgatttatgaaagtattgagagggttagaaagaatagtgatgtataaaactaggttagaagaagcctcccacacatacatacc |
55173860 |
T |
|
| Q |
510 |
cgtggttccattcggcttggatgaacggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatcattgttgcc |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55173861 |
cgtggttccattcggcttggatgaacggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatcattgttgcc |
55173960 |
T |
|
| Q |
610 |
ttcaaagttgaactgcataacgtttgataaacaaattaagtttacaatcaaatgttccatacattgagtcaagagattaattttgtcatttaattaatca |
709 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55173961 |
ttcaaaattgaactgcataacgtttgataaacaaattaagtttacaatcaaatgttccatacattgagtcaagagattaattttgtcatttaattaatca |
55174060 |
T |
|
| Q |
710 |
tataccttgccttgctctggctcatgagcgttccaaaacacgtaagtttgaataacgttcaaacctccatgtcttgccttatcaagaatgtctggccacg |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55174061 |
tataccttgccttgctctggctcatgagcgttccaaaacacgtaagtttgaataacgttcaaacctccatgtcttgccttatcaagaatgtctggccacg |
55174160 |
T |
|
| Q |
810 |
cctgaaaagtacaacatcaatcaatctgatga |
841 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |
|
|
| T |
55174161 |
cctgaaaagtacaacatcaatcaatcttatga |
55174192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 116 - 265
Target Start/End: Complemental strand, 27721296 - 27721147
Alignment:
| Q |
116 |
acttacgacgggatcgggagcatccttctgcttgcacatgatccacggaactcctatgtccaaggccactgccatatttgcggcccactgaacataacta |
215 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||||||||||| ||| |||||||| | | | | |||||||| ||||| ||||||||||||||| || |
|
|
| T |
27721296 |
acttacaactggatcaggagcatccttctgcttgcacatgacccatggaactccattatatagtgaaactgccatttttgcagcccactgaacataatta |
27721197 |
T |
|
| Q |
216 |
tctcccttctcttcataagcaagttgaatatggttgtactcattttcaat |
265 |
Q |
| |
|
||||| | |||||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
27721196 |
tctccatcagcttcataagcaagttggatgtggttgtactcattctcaat |
27721147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 497 - 602
Target Start/End: Complemental strand, 27720705 - 27720600
Alignment:
| Q |
497 |
acacatacatacccgtggttccattcggcttggatgaacggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcacca |
596 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||||| || |||| || ||||| || ||||||||||| ||| |||||| ||| ||| ||||||| |
|
|
| T |
27720705 |
acacacacatacccgtgattccattcagcttggatgaaagggccaattctaagggtaacatacattcctttctcttgtacaagcttaaggaatttcacca |
27720606 |
T |
|
| Q |
597 |
aatcat |
602 |
Q |
| |
|
|||||| |
|
|
| T |
27720605 |
aatcat |
27720600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 27720854 - 27720793
Alignment:
| Q |
366 |
ggttcattgtcagagcggaatatgatccctggaacctctcttagccaatatggaagtcctct |
427 |
Q |
| |
|
|||||||||| ||| ||||||||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
27720854 |
ggttcattgttagaacggaatatgatgtcagggacctctcttagccaatatggaagtcctct |
27720793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 27721035 - 27720986
Alignment:
| Q |
270 |
gccaagatgatggggcctccttggggagcaaagagcttctcatctttcat |
319 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| || || |||||||| |
|
|
| T |
27721035 |
gccaagatgatagggcctccttgaggagcaaagagtttttcttctttcat |
27720986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 42989290 - 42989343
Alignment:
| Q |
116 |
acttacgacgggatcgggagcatccttctgcttgcacatgatccacggaactcc |
169 |
Q |
| |
|
|||||| || ||||| |||||||| | |||||||||||||||||||||||||| |
|
|
| T |
42989290 |
acttacaacaggatcaggagcatcatcttgcttgcacatgatccacggaactcc |
42989343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University