View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18244_low_21 (Length: 312)
Name: NF18244_low_21
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 7 - 296
Target Start/End: Original strand, 4661593 - 4661882
Alignment:
| Q |
7 |
gtagcataggctgagtcaacaggtttggaccagaagcaaataaataactggttcataaatcaaaggaagaggcactggaaaccatcagaagacatgcagt |
106 |
Q |
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| T |
4661593 |
gtagcattggctgagtcaacaggtttggaccagaagcaaataaataactggttcataaatcaaaggaagaggcactggaaaccatcagaagacatgcagt |
4661692 |
T |
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| Q |
107 |
ttatggtgatggatggactgcatccacagagtgcagctctttatatggatggtcattacatggctgatggtccctaccgtttagggccatgattatgata |
206 |
Q |
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| T |
4661693 |
ttatggtgatggatggactgcatccacagagtgcagctctttatatggatggtcattacatggctgatggtccctaccgtttagggccatgattatgata |
4661792 |
T |
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| Q |
207 |
tatgaagcgttgacactgacacatcgacaccaatgtcggcgtggtggtcggacttatcttcaatattatgaccactttatatattatatt |
296 |
Q |
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| T |
4661793 |
tatgaagcgttgacactggcacatcgacaccaatgtcggcgtggtggtcggacttatcttcaatattatgaccactttatatattatatt |
4661882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 37489300 - 37489242
Alignment:
| Q |
40 |
aagcaaataaataactggttcataaatcaaaggaagaggcactggaaaccatcagaaga |
98 |
Q |
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| T |
37489300 |
aagcagataaataattggttcatcaatcagaggaaaagacactggaaaccatctgaaga |
37489242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 8791989 - 8791891
Alignment:
| Q |
22 |
tcaacaggtttggaccagaagcaaataaataactggttcataaatcaaaggaagaggcactggaaaccatcagaagacatgcagtttatggtgatggat |
120 |
Q |
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| T |
8791989 |
tcaacaggtcttgatcagaagcaaataaacaactggtttattaatcaaaggaaacggcactggaagccttcagaggacatgcagtttgtggtgatggat |
8791891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 8780481 - 8780396
Alignment:
| Q |
37 |
cagaagcaaataaataactggttcat--aaatcaaaggaagaggcactggaaaccatcagaagacatgcagtttatggtgatggat |
120 |
Q |
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| T |
8780481 |
cagaagcaaataaacaactggtttattaaaatcaaagaaaacggcactggaagccttcagaggacatgcagtttgtggtgatggat |
8780396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 48282138 - 48282094
Alignment:
| Q |
40 |
aagcaaataaataactggttcataaatcaaaggaagaggcactgg |
84 |
Q |
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| T |
48282138 |
aagcaaataaataactggtttattaatcaaaggaaaaggaactgg |
48282094 |
T |
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