View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18244_low_28 (Length: 258)

Name: NF18244_low_28
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18244_low_28
NF18244_low_28
[»] chr5 (7 HSPs)
chr5 (11-242)||(39576259-39576490)
chr5 (14-242)||(39572253-39572481)
chr5 (71-133)||(4100468-4100530)
chr5 (49-133)||(2326343-2326427)
chr5 (71-133)||(4146517-4146579)
chr5 (71-129)||(225362-225420)
chr5 (78-193)||(3561541-3561653)
[»] chr8 (4 HSPs)
chr8 (49-193)||(9841934-9842075)
chr8 (49-124)||(9860641-9860716)
chr8 (71-136)||(27360976-27361041)
chr8 (85-129)||(9902942-9902986)
[»] chr1 (3 HSPs)
chr1 (55-193)||(46672088-46672226)
chr1 (56-136)||(46445998-46446078)
chr1 (55-129)||(5054203-5054277)
[»] chr3 (1 HSPs)
chr3 (71-136)||(7256838-7256903)
[»] scaffold0658 (1 HSPs)
scaffold0658 (71-136)||(2856-2921)
[»] chr6 (1 HSPs)
chr6 (71-136)||(112644-112709)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 39576490 - 39576259
Alignment:
Q  11 cacagacgaaatatcgcacttataatattaagctggttaccactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaat 110  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39576490 cacaaacgaaatatcgcactcataatattaagctggttaccactagcagcaacataattgaaaggtcccatctcatgataaagagaccattctcctgaat 39576391  T
Q  111 caaaatccaaaatgtagatttgatatctattctgaaaatgatctttatacaaaatgcaagaaaggcaatttcccatccataaagacttcagaggcggacg 210  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  39576390 caaaatccaaagtgtagatttgatatcttttctgaaaatgatctttatacacaatgcaagaaagacaatttcccatccataaagacttcagaggcggacg 39576291  T
Q  211 accaagcgttgacacagggggaaatggatatt 242  Q
    |||||||||||||||||||||||||| |||||    
T  39576290 accaagcgttgacacagggggaaatgaatatt 39576259  T

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Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 39572481 - 39572253
Alignment:
Q  14 agacgaaatatcgcacttataatattaagctggttaccactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaa 113  Q
    |||| ||||||| || | ||||||| |||||||||||||| ||||||||||||||  ||||||||||||||||||||| |||||||||||| ||||||||    
T  39572481 agacaaaatatctcaatcataatatcaagctggttaccacaagcagcaacataatcaaaaggtcccatctcatgataaggagaccattttcttgaatcaa 39572382  T
Q  114 aatccaaaatgtagatttgatatctattctgaaaatgatctttatacaaaatgcaagaaaggcaatttcccatccataaagacttcagaggcggacgacc 213  Q
    ||||||||||||||||| ||||||| || ||||||||||||||||||| ||||||||||| || |||| ||||||||||| |||||| ||| ||||||||    
T  39572381 aatccaaaatgtagattggatatcttttttgaaaatgatctttatacacaatgcaagaaaagcgattttccatccataaaaacttcacaggtggacgacc 39572282  T
Q  214 aagcgttgacacagggggaaatggatatt 242  Q
    | || |  ||||||| |||||||||||||    
T  39572281 acgcatcaacacaggtggaaatggatatt 39572253  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 4100468 - 4100530
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttga 133  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  4100468 aaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaatgtagatttga 4100530  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 2326343 - 2326427
Alignment:
Q  49 accactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttga 133  Q
    ||||| || ||| |||||||  || |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  2326343 accacaagtagccacataatcaaatggtcccatctcatgataaagagacaattttcctgaatcaaaattcaaaatgtagatttga 2326427  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 4146579 - 4146517
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttga 133  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||  |||||||||    
T  4146579 aaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttga 4146517  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 225420 - 225362
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagat 129  Q
    |||||||  ||||||||||||||||||||||||| || ||||||||| || ||||||||    
T  225420 aaaggtcagatctcatgataaagagaccattttcttgcatcaaaatctaacatgtagat 225362  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 3561541 - 3561653
Alignment:
Q  78 ccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatatctattctgaaaatgatctttatacaaaatgcaagaaaggca 177  Q
    ||||||| |||||||| ||||||||||||||||  | |||||||||||| |||||| || | ||   ||   |||||| || || |||||||||||||      
T  3561541 ccatctcgtgataaagtgaccattttcctgaattgatatccaaaatgtaaatttgaaatgtttt---aatgggatcttcatgcacaatgcaagaaaggtg 3561637  T
Q  178 atttcccatccataaa 193  Q
    ||||||||||||||||    
T  3561638 atttcccatccataaa 3561653  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 193
Target Start/End: Complemental strand, 9842075 - 9841934
Alignment:
Q  49 accactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatatctattctgaaaa 148  Q
    ||||| |||||  |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| || |   | ||    
T  9842075 accacaagcagacacataatcaaaaggtcccatctcatgatgaagagaccattttcctgaatcaaaatccagaatgtagatttgatatgtact---ataa 9841979  T
Q  149 tgatctttatacaaaatgcaagaaaggcaatttcccatccataaa 193  Q
      |||||||  |  |||||||||||||| ||||||||||||||||    
T  9841978 gtatctttagtcgcaatgcaagaaaggcgatttcccatccataaa 9841934  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 9860716 - 9860641
Alignment:
Q  49 accactagcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatg 124  Q
    ||||| |||||  |||||||  ||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  9860716 accacaagcagacacataatcaaaaggtcccatctcatgataaagagaccattttcctgaatcatgatccaaaatg 9860641  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 27361041 - 27360976
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 136  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||| | ||||||||||||    
T  27361041 aaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatat 27360976  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 9902986 - 9902942
Alignment:
Q  85 atgataaagagaccattttcctgaatcaaaatccaaaatgtagat 129  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  9902986 atgataaaaagaccattttcttgaatcaaaatccaaaatgtagat 9902942  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 193
Target Start/End: Original strand, 46672088 - 46672226
Alignment:
Q  55 agcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatatctattctgaaaatgatct 154  Q
    |||||| |||||||  ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||   |  | ||  | ||||    
T  46672088 agcagccacataatcaaaatgtcccatcgcatgatagagagaccattttcctgaatcaaaatccaaaatgtagatttgatatgcttcattaattttatct 46672187  T
Q  155 ttatacaaaatgcaagaaaggcaatttcccatccataaa 193  Q
    || |||| |||||||||||||  |||||||||| |||||    
T  46672188 ttgtacacaatgcaagaaaggtgatttcccatcaataaa 46672226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 46446078 - 46445998
Alignment:
Q  56 gcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 136  Q
    ||||| |||||||  ||| |||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||    
T  46446078 gcagccacataatcaaaatgtcccatctcatgataaagagaccattcccccgaatcaaaatccaaaatgtagatttgatat 46445998  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 5054203 - 5054277
Alignment:
Q  55 agcagcaacataattgaaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagat 129  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||||||||| | ||||||||||||||| |||||    
T  5054203 agcagcaacataatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatatagat 5054277  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 7256903 - 7256838
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 136  Q
    ||||||||||||  |||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  7256903 aaaggtcccatcatatgataaagagaccattttcttgaatcaaaatctaaaatgtagatttgatat 7256838  T

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Target: scaffold0658 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 2856 - 2921
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 136  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||| | ||||||||||||    
T  2856 aaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatat 2921  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 112644 - 112709
Alignment:
Q  71 aaaggtcccatctcatgataaagagaccattttcctgaatcaaaatccaaaatgtagatttgatat 136  Q
    ||||| ||||||||||||||||||| |||||||||| |||| |||||||||   ||||||||||||    
T  112644 aaaggccccatctcatgataaagagtccattttcctaaatccaaatccaaagcatagatttgatat 112709  T

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