View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18244_low_3 (Length: 709)
Name: NF18244_low_3
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 607; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 25 - 693
Target Start/End: Complemental strand, 51320528 - 51319869
Alignment:
| Q |
25 |
gataccaccagagtttaattatgtcaaatcccaattcaattactattccctcatcagctcctgaggacggtacgtttgtttaacaacatcccaacctatg |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51320528 |
gataccaccagagtttaattatgtcaaatcccaattcaattactattccctcatcagctcctgaggacggtacgtttgtttaacaacatcccaacctatg |
51320429 |
T |
|
| Q |
125 |
tatgtatgtatttctatatatatatttcacaggaaccttgatgtctatttttgtagtgcgacctcatcatctatcaacaacgtttgtttagttaatttta |
224 |
Q |
| |
|
||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51320428 |
tat----gta----tatctatatatttcacaggaaccttgatgtctatttttgtagtgcgacctcatcatctatcaacaacgtttgtttagttaa-ttta |
51320338 |
T |
|
| Q |
225 |
agtcaaattttattggatcctttttatacatgtttgggaatgtaatgataatatgaagttcaaaatatccaggaacatataaaaggtgtatttctatggc |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51320337 |
agtcaaattttattggatcctttttatacatgtttgggaatgtaatgataatatgaagttcaaaatatccaggaacatataaaaggtgtatttctatggc |
51320238 |
T |
|
| Q |
325 |
agcagcaacaggggattgggcaatagcttcctcttacgataaaactcatcctaactggatatctactcccttgactgtggatggagacacagctctccat |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51320237 |
agcagcaacaggggattgggcaatagcttcctcttacgataaaactcatcctaactggatatctactcccttgactgtggatggagacacagctctccat |
51320138 |
T |
|
| Q |
425 |
attgcagtgagaatggaagaaactaaatttgttgaaaagttggttgaacgtacgagcaaaatagatatggaaattcgtagaaccgatggaaatactgttt |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
51320137 |
attgcagtgagaatggaagaaactaaatttgttgaaaagttggttgaacgtactagcaaaaaagatatggaaattcgtagaaccgatggaaatactgtct |
51320038 |
T |
|
| Q |
525 |
tttgtttagctgctgtttcaggaaatgtgaaaattgcaagaattttaagtgaaaagaatccagaattggtatggattaaaggccatgaagaacagttacc |
624 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51320037 |
tttgtttagctgctgtttcaggaaatgtgaaaattgcaagaattttatgtgaaaagaatccagaattggtatggattaaaggccatgaagaacagttacc |
51319938 |
T |
|
| Q |
625 |
aattcaattggcttccttagctggacaacttcatatggtgaagtttttgtttcaaaggattgaacaaga |
693 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51319937 |
aattcaattggcttccttagctggacaacttcatatggtgaagtttttgtttcaaaggattgaacaaga |
51319869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 294 - 691
Target Start/End: Complemental strand, 51344275 - 51343878
Alignment:
| Q |
294 |
caggaacatataaaaggtgtatttctatggcagcagcaacaggggattgggcaatagcttcctcttacgataaaactcatcctaactggatatctactcc |
393 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||||| |||||||||| | ||||| || || |||||||||||||||||||||||||||||||| |
|
|
| T |
51344275 |
caggaacatataaaaagattatttgtatggcagcagcaaaaggggattggaataaggcttcatcctatgataaaactcatcctaactggatatctactcc |
51344176 |
T |
|
| Q |
394 |
cttgactgtggatggagacacagctctccatattgcagtgagaatggaagaaactaaatttgttgaaaagttggttgaacgtacgagcaaaatagatatg |
493 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||||||||||| |||||| ||| ||||||||||||||||||||| ||||||| | ||||| ||||||| |
|
|
| T |
51344175 |
cttgactatggatggagatacagctcttcatattgcagtgaggatggaaaaaatcaaatttgttgaaaagttggttaaacgtacaaacaaaaaagatatg |
51344076 |
T |
|
| Q |
494 |
gaaattcgtagaaccgatggaaatactgttttttgtttagctgctgtttcaggaaatgtgaaaattgcaagaattttaagtgaaaagaatccagaattgg |
593 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51344075 |
gaaattcgtagagttgatggaaatactgtcttttgtttagctgctatttcaggaaacgtgaaaattgcaagaattttatgtgaaaagaatccagaattgg |
51343976 |
T |
|
| Q |
594 |
tatggattaaaggccatgaagaacagttaccaattcaattggcttccttagctggacaacttcatatggtgaagtttttgtttcaaaggattgaacaa |
691 |
Q |
| |
|
||||||||||||| ||||||||| |||| |||||||||||||| |||| ||| || ||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
51343975 |
tatggattaaaggtcatgaagaaaagttgccaattcaattggcatcctcagccgggcaacttcatatggtggagtttttgtttcaaaggattcaacaa |
51343878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 295 - 442
Target Start/End: Complemental strand, 51314435 - 51314288
Alignment:
| Q |
295 |
aggaacatataaaaggtgtatttctatggcagcagcaacaggggattgggcaatagcttcctcttacgataaaactcatcctaactggatatctactccc |
394 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||| ||| ||||||||||||| || ||||| || || |||||| |||||||||| |||||||||||| || |
|
|
| T |
51314435 |
aggagcatataaaagtagtatttgtatggcagctgcatcaggggattgggctatggcttcatcatatgataaatctcatcctaattggatatctactacc |
51314336 |
T |
|
| Q |
395 |
ttgactgtggatggagacacagctctccatattgcagtgagaatggaa |
442 |
Q |
| |
|
|| |||| |||||||||| || ||||| ||||| ||| ||||||| |
|
|
| T |
51314335 |
ttaactgcaaatggagacacggcactccacattgcggtggcaatggaa |
51314288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University