View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18244_low_30 (Length: 248)
Name: NF18244_low_30
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 49681880 - 49682103
Alignment:
| Q |
18 |
atatcaagttgcttaaaaataagggttgtgacttcaagaaggcaccctcgaatgagagaacttaacaataaaaagcattattttagtgcaaatctgaact |
117 |
Q |
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| T |
49681880 |
atatcaagttgcttaaaaataagggatgtgacttcaagaaggcaccctcgaatgagagaacttaataataaaaaacattattttagtgcaaatctgaact |
49681979 |
T |
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| Q |
118 |
atattaaatgggagttggtaggttacttaatttttatttatttcatagaaagtgagtgagtggatggattggannnnnnnaccaacggatagaaattggt |
217 |
Q |
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| T |
49681980 |
atattagatgggagttggtaggttacttaatttttatttatttcatagaaagtgagtgagtggatggattggatttttttaccaacggatagaaattggt |
49682079 |
T |
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| Q |
218 |
acatggttaattcaatgatgatgt |
241 |
Q |
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| T |
49682080 |
gcatggttaattcaattatgatgt |
49682103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 3885851 - 3885754
Alignment:
| Q |
25 |
gttgcttaaaaataagggttgtgacttcaagaaggcaccctcgaatgagagaacttaacaataaaaagcattattttagtgcaaatctgaactatatta |
123 |
Q |
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| T |
3885851 |
gttgcttaaaaataagggatgtaacttttagaggacaccctcgtatcagagaactta-caataaaaagccttattttattgcaaatctgaactaaatta |
3885754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 14836602 - 14836677
Alignment:
| Q |
18 |
atatcaagttgcttaaaaataagggttgtgacttcaagaaggcaccctcgaatgagagaacttaacaataaaaagc |
93 |
Q |
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| T |
14836602 |
atatcaagttgcttaaagataagggatatgacttcaagaaggcaccctaatgtaagagaacttaacaataaaaagc |
14836677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 14837689 - 14837733
Alignment:
| Q |
144 |
ttaatttttatttatttcatagaaagtgagtgagtggatggattg |
188 |
Q |
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| T |
14837689 |
ttaatttttatttatttcatagaaagtgacttagtggatggattg |
14837733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 31515520 - 31515612
Alignment:
| Q |
23 |
aagttgcttaaaaataagggttgtgacttcaagaaggcaccctcgaatgagagaacttaacaataaaaagcattattttagtgcaaatctgaa |
115 |
Q |
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| T |
31515520 |
aagttgcttaaaaataagggatgtatcttcaagaaggcaccttcatgttagggaacttaacaataaaaagtcttattttattgcaaatatgaa |
31515612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 225
Target Start/End: Original strand, 31515877 - 31515973
Alignment:
| Q |
127 |
gggagttggtaggttacttaatttttatttatttcatagaaagtgagtgagtggatggattggannnnnnnaccaacggatagaaattggtacatggtt |
225 |
Q |
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| T |
31515877 |
gggagttggtaggataattaatttgtatttatttcatagaaattaactgagtggatggattgaa--tttttaccaacggatagaaattggaacatggtt |
31515973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 39234520 - 39234552
Alignment:
| Q |
209 |
gaaattggtacatggttaattcaatgatgatgt |
241 |
Q |
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| T |
39234520 |
gaaattggtacatggttaattcaattatgatgt |
39234552 |
T |
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