View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18244_low_31 (Length: 242)
Name: NF18244_low_31
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 28281642 - 28281418
Alignment:
| Q |
1 |
ttttagtatattttattaggaaatcactctttttgcataaaataaatgtgaaatgttatggacaagattctttaaagaatgatcacaatatcaaaataac |
100 |
Q |
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| T |
28281642 |
ttttagtatattttattaggaaatcactctttttgcataaaacaaatgtgaaatgttatggacaagattctttaaagaatgatcacaatatcaaaataac |
28281543 |
T |
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| Q |
101 |
caatttctatagaagctttaatgaatggttacctgcagagcccatttttcaagattgccatgacgtagaaccttacaatcaagatcattcttaacctcct |
200 |
Q |
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| T |
28281542 |
caatttctatagaagctttaatgaatggttacctgcagagcccatttttcaagattgccatgacgtagaaccttacaatcaagatcattcttaacctcct |
28281443 |
T |
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| Q |
201 |
taagtacattcttcaaagtggatgg |
225 |
Q |
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| T |
28281442 |
taagtacattcttcaaagtggatgg |
28281418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 28289632 - 28289526
Alignment:
| Q |
119 |
taatgaatggttacctgcagagcccatttttcaagattgccatgacgtagaaccttacaatcaagatcattcttaacctccttaagtacattcttcaaag |
218 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||| ||| | ||| |||| ||| ||| ||||||| |||||||| ||||||||||||| |
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| T |
28289632 |
taatcaatggttacctgcaaagcccatttttcaagattgccgtgagatggaatggaacaaccaatatctttcttaagctccttaaatacattcttcaaaa |
28289533 |
T |
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| Q |
219 |
tggatgg |
225 |
Q |
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| T |
28289532 |
tggatgg |
28289526 |
T |
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