View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18244_low_33 (Length: 222)
Name: NF18244_low_33
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_low_33 |
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| [»] scaffold0879 (1 HSPs) |
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Alignment Details
Target: scaffold0879 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 4428 - 4456
Alignment:
| Q |
93 |
tcacctcccccaccatatgtctataagag |
121 |
Q |
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| T |
4428 |
tcacctcccccaccatatgtctataagag |
4456 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 24421346 - 24421318
Alignment:
| Q |
93 |
tcacctcccccaccatatgtctataagag |
121 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
24421346 |
tcacctcccccaccatatgtctataagag |
24421318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 24470377 - 24470405
Alignment:
| Q |
93 |
tcacctcccccaccatatgtctataagag |
121 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
24470377 |
tcacctcccccaccatatgtctataagag |
24470405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 24470569 - 24470597
Alignment:
| Q |
93 |
tcacctcccccaccatatgtctataagag |
121 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
24470569 |
tcacctcccccaccatatgtctataagag |
24470597 |
T |
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