View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18244_low_34 (Length: 215)

Name: NF18244_low_34
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18244_low_34
NF18244_low_34
[»] chr3 (8 HSPs)
chr3 (16-196)||(52848879-52849059)
chr3 (53-177)||(52847407-52847531)
chr3 (41-176)||(52847731-52847866)
chr3 (53-195)||(52848748-52848890)
chr3 (87-196)||(52848614-52848723)
chr3 (101-178)||(52847287-52847364)
chr3 (53-178)||(52847575-52847700)
chr3 (41-188)||(52847899-52848046)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 52848879 - 52849059
Alignment:
Q  16 agaccatattgttaacatctcaactaaatctaacgattcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatct 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52848879 agaccatcttgttaacatctcaactaaatctaacgattcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatct 52848978  T
Q  116 tctatagggaatggacatagtgatcaagatgctcctcagcgaaaagttgaggacattaaaaggtccagtgaccatcttgtg 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52848979 tctatagggaatggacatagtgatcaagatgctcctcagcgaaaagttgaggacattaaaaggtccagtgaccatcttgtg 52849059  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 52847407 - 52847531
Alignment:
Q  53 tcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatcaagatgctcctc 152  Q
    ||||||||||||||| |  |||| ||| || |||| |||||||||||||||||  ||||||| |||||| ||||||| ||||||||||||||||||||||    
T  52847407 tcatttgaatctgaaacttgttgtatggctaccatatctcttcctcaggtagaatgtaaatcatctatatggaatgggcatagtgatcaagatgctcctc 52847506  T
Q  153 agcgaaaagttgaggacattaaaag 177  Q
    ||  |||| ||||||||||||||||    
T  52847507 aggaaaaaattgaggacattaaaag 52847531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 41 - 176
Target Start/End: Original strand, 52847731 - 52847866
Alignment:
Q  41 aaatctaacgattcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatc 140  Q
    |||||||  ||||||||||||||| ||||  ||||||||  ||| |||||||| |||||||||||  ||||||| |||||| ||||||| ||||||||||    
T  52847731 aaatctattgattcatttgaatctaaaccatgttgcatggatgcaatgtctctccctcaggtagaatgtaaatcatctatatggaatgggcatagtgatc 52847830  T
Q  141 aagatgctcctcagcgaaaagttgaggacattaaaa 176  Q
    || |||||||||||  |||| |||||||| ||||||    
T  52847831 aatatgctcctcagaaaaaaattgaggacgttaaaa 52847866  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 195
Target Start/End: Original strand, 52848748 - 52848890
Alignment:
Q  53 tcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatcaagatgctcctc 152  Q
    ||||||||||| |||||| |||||||| ||||||| |||||||||   |||||||| || || | | |||||||||| ||||||||||||||||||||||    
T  52848748 tcatttgaatcggaaccctgttgcatggctgccatatctcttccttttgtagatggcaagtcatttgtagggaatgggcatagtgatcaagatgctcctc 52848847  T
Q  153 agcgaaaagttgaggacattaaaaggtccagtgaccatcttgt 195  Q
    | | ||||  |||||| ||||||||| |||  |||||||||||    
T  52848848 aacaaaaaactgaggatattaaaaggaccaaagaccatcttgt 52848890  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 52848614 - 52848723
Alignment:
Q  87 tgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatcaagatgctcctcagcgaaaagttgaggacattaaaaggtccagtga 186  Q
    |||||| || |||||||||| ||||||| |||| |||||||||||||||||||||| ||| |||||| | |||| ||||||||||||||||| | |  ||    
T  52848614 tgtctcctcgtcaggtagattgtaaatcatctacagggaatggacatagtgatcaatatgttcctcaacaaaaaattgaggacattaaaaggacgaacga 52848713  T
Q  187 ccatcttgtg 196  Q
    ||||||||||    
T  52848714 ccatcttgtg 52848723  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 52847287 - 52847364
Alignment:
Q  101 gtagatggtaaatcttctatagggaatggacatagtgatcaagatgctcctcagcgaaaagttgaggacattaaaagg 178  Q
    ||||||||||||||  | || |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  52847287 gtagatggtaaatcacccatggggagtggacatagtgatcaagatgctcctcagcaaaaaattgaggacattaaaagg 52847364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 52847575 - 52847700
Alignment:
Q  53 tcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatcaagatgctcctc 152  Q
    ||||||||||| ||| |  |||| ||| || ||||||||| ||||||||||||  ||||||| |||| || |||||| ||||||| | |||||||||||     
T  52847575 tcatttgaatcggaaacgtgttgtatggctcccatgtctcctcctcaggtagaacgtaaatcatctacagagaatgggcatagtggtgaagatgctccta 52847674  T
Q  153 agcgaaaagttgaggacattaaaagg 178  Q
    ||| |||| |||||||||||||||||    
T  52847675 agcaaaaaattgaggacattaaaagg 52847700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 188
Target Start/End: Original strand, 52847899 - 52848046
Alignment:
Q  41 aaatctaacgattcatttgaatctgaaccccgttgcatgactgccatgtctcttcctcaggtagatggtaaatcttctatagggaatggacatagtgatc 140  Q
    |||||||| || |||| |||||| ||| ||  ||||||||| |||  ||||| ||||| ||||||  ||||||| |||| |||| |||  |||| |||||    
T  52847899 aaatctaatgactcatatgaatcagaatccttttgcatgacagccccgtctcatcctctggtagaatgtaaatcatctaaaggggatgagcataatgatc 52847998  T
Q  141 aagatgctcctcagcgaaaagttgaggacattaaaaggtccagtgacc 188  Q
    |||||| |||||| | |||| ||||||||||||||||| ||| |||||    
T  52847999 aagatgatcctcaactaaaaattgaggacattaaaaggaccaatgacc 52848046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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