View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18244_low_5 (Length: 617)
Name: NF18244_low_5
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 17 - 607
Target Start/End: Original strand, 55173602 - 55174192
Alignment:
| Q |
17 |
gtactcattttcaatttgtgccaagatgatggggcctccttggggagcaaagagcttctcatctttcatcatttggataatttttgacacgtatgctttc |
116 |
Q |
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| T |
55173602 |
gtactcattttcaatttgtgccaagatgatggggcctccttggggagcaaagagcttctcatctttcatcatttggataatttttgacacgtatgctttc |
55173701 |
T |
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| Q |
117 |
atgtgtttcttgtagggttcattgtcagagcggaatatgatccctggaacctctcttagccaatatggaagtcctctgatttatgaaagtattgagaggg |
216 |
Q |
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| T |
55173702 |
atgtatttcttgtagggttcattgtcagagcggaatatgatccctggaacctctcttagccaatatggaagtcctctgatttatgaaagtattgagaggg |
55173801 |
T |
|
| Q |
217 |
ttagaaagaatagtaatgtataaagctaggttagaagaagcctcccacacatacatacccgtggttccattcggcttggatgaacggtccaaccctgagg |
316 |
Q |
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| T |
55173802 |
ttagaaagaatagtgatgtataaaactaggttagaagaagcctcccacacatacatacccgtggttccattcggcttggatgaacggtccaaccctgagg |
55173901 |
T |
|
| Q |
317 |
gtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatcattgttgccttcaaagttgaactgcataacgtttgataaacaaattaagt |
416 |
Q |
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| T |
55173902 |
gtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatcattgttgccttcaaaattgaactgcataacgtttgataaacaaattaagt |
55174001 |
T |
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| Q |
417 |
ttacaatcaaatgttccatacattgagtcaagagattaattttgtcatttaattaatcatataccttgccttgctctggctcatgagcgttccaaaacac |
516 |
Q |
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| T |
55174002 |
ttacaatcaaatgttccatacattgagtcaagagattaattttgtcatttaattaatcatataccttgccttgctctggctcatgagcgttccaaaacac |
55174101 |
T |
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| Q |
517 |
gtaagtttgaataacgttcaaacctccatgtcttgccttatcaagaatgtctggccacgcctgaaaagtacaacatcaatcaatctgatga |
607 |
Q |
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| T |
55174102 |
gtaagtttgaataacgttcaaacctccatgtcttgccttatcaagaatgtctggccacgcctgaaaagtacaacatcaatcaatcttatga |
55174192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 263 - 368
Target Start/End: Complemental strand, 27720705 - 27720600
Alignment:
| Q |
263 |
acacatacatacccgtggttccattcggcttggatgaacggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcacca |
362 |
Q |
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| T |
27720705 |
acacacacatacccgtgattccattcagcttggatgaaagggccaattctaagggtaacatacattcctttctcttgtacaagcttaaggaatttcacca |
27720606 |
T |
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| Q |
363 |
aatcat |
368 |
Q |
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|||||| |
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| T |
27720605 |
aatcat |
27720600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 27720854 - 27720793
Alignment:
| Q |
132 |
ggttcattgtcagagcggaatatgatccctggaacctctcttagccaatatggaagtcctct |
193 |
Q |
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|||||||||| ||| ||||||||||| | || ||||||||||||||||||||||||||||| |
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| T |
27720854 |
ggttcattgttagaacggaatatgatgtcagggacctctcttagccaatatggaagtcctct |
27720793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 27721035 - 27720986
Alignment:
| Q |
36 |
gccaagatgatggggcctccttggggagcaaagagcttctcatctttcat |
85 |
Q |
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||||||||||| ||||||||||| ||||||||||| || || |||||||| |
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| T |
27721035 |
gccaagatgatagggcctccttgaggagcaaagagtttttcttctttcat |
27720986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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