View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18244_low_8 (Length: 555)
Name: NF18244_low_8
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 81 - 543
Target Start/End: Original strand, 33103676 - 33104133
Alignment:
| Q |
81 |
ctactagtgattcctgtagagtttttatataagtttggtttgatgattattaattttgattgtaggtggcatgtgcatatgcctaaaataatagagaaat |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33103676 |
ctactagtgattcctgtagagtttttatataagtttggttttatgattattaattttgattgtaggtggcatgtgcatatgcctaaaataatagagaaat |
33103775 |
T |
|
| Q |
181 |
caatctccatactgtctgatgctggtcttggaatggctatgttcagtttaggtgagtagtcacatttttctccaaattcctccttatacaataatttcat |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33103776 |
caatctccatactgtctgatgctggtcttggaatggctatgttcagtttaggtgagtagtcacatttttctccaaattcctccttatacaataatttcat |
33103875 |
T |
|
| Q |
281 |
tctttcctttctttgcaattactttcctcttttacattaaacaccattattgcttccaatcccatttatttccattatattttcaacaataaagtaattt |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||| |
|
|
| T |
33103876 |
tctttcctttctttgcaattactttcctcttttacattaaacaccattattgcttccaatccc----atttccattatattttcaacagtaaattaattt |
33103971 |
T |
|
| Q |
381 |
aattattgtacatatactac---tcatctcaattatatcatgttagtaattttcttttgtaccatgaaaaatttaataatttattgaaaaaagaacgaac |
477 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33103972 |
aattattgtacatatactactaatcatctcaattatatcatgttagtaattttcttttgtaccatgaaaaatttaataatttattgaaaaaa----gaac |
33104067 |
T |
|
| Q |
478 |
aatcataaaacaatgaagagggtacaatggcagtggaatgaaagtgatggtaacatggtatgatga |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33104068 |
aatcataaaacaatgaagagggtacaatggcagtgaaatgaaagtgatggtaacatggtatgatga |
33104133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 33103590 - 33103655
Alignment:
| Q |
18 |
aaaatcatatttaattgaccgcaaaatcgattactttaagttgcttttttgactttttgacttcta |
83 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33103590 |
aaaatcataattaattgaccgcaaaatcgattactttaagttgcttttttgactttttgacttcta |
33103655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 52717971 - 52718021
Alignment:
| Q |
183 |
atctccatactgtctgatgctggtcttggaatggctatgttcagtttaggt |
233 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
52717971 |
atctcaatactgtctgatgctggtcttggaatggccatgttcagtctaggt |
52718021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 10837088 - 10836992
Alignment:
| Q |
144 |
aggtggcatgtgcatatgcctaaaataatagagaaatcaatctccatactgtctgatgctggtcttggaatggctatgttcagtttaggtgagtagt |
240 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| |||||| |
|
|
| T |
10837088 |
aggtgggatgttcatatgcctaaaataatagagaaatcaatttccatactgtctgatgctggtcttggaatggctatgtttagcttaggtaagtagt |
10836992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University