View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18244_low_9 (Length: 483)
Name: NF18244_low_9
Description: NF18244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18244_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 15 - 381
Target Start/End: Original strand, 27723658 - 27724024
Alignment:
| Q |
15 |
cacagatatgctggacctaagactataaccatcctaggtttgatgtctggaacaattgacctcacttctaatggttggggtcatcaggtattttaatctg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27723658 |
cacagatatgctggacctaagactataaccatcctaggtttgatgtctggaacaattgacctcacttctaatggttggggtcatcaggtattttaatctg |
27723757 |
T |
|
| Q |
115 |
tctttnnnnnnntattttaattaaagatccaaactatgattgaattgctaggattgtattgttaattgaattgatgacaatttgcaggttggtctccaag |
214 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27723758 |
tctttaaaaaaatattttaattaaagatccaaactatgattgaattgctaggattgtattgttaattgaatcgatgacaatttgcaggttggtctccaag |
27723857 |
T |
|
| Q |
215 |
gtgagaatgatagcattttcactgagaagggatcaaagaaagtagaatggaaagatggcaagggaaaaggatcaactatctcctggtacaaggtattggc |
314 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27723858 |
gtgagaatgatagcattttcaccgagaagggatcaaagaaagtagaatggaaagatggcaagggaaaaggatcaactatctcctggtacaaggtattggc |
27723957 |
T |
|
| Q |
315 |
catttagattaaaacatatctttcgtcctataaaattacgaatttataagtttagtccctacaaaaa |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27723958 |
catttagattaaaacatatctttcgtcctataaaattacgaatttataagttcagtccctacaaaaa |
27724024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 397 - 466
Target Start/End: Original strand, 27724160 - 27724229
Alignment:
| Q |
397 |
actctagtttttatttgtaacaagattcaatcaaacacctttgaattctttatgattccatatattcatt |
466 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27724160 |
actctagtttttatttgtaacatgattcaatcaaacacctttgaattctttatgattccatatattcatt |
27724229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University