View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18245_high_5 (Length: 412)
Name: NF18245_high_5
Description: NF18245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18245_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 3425593 - 3425214
Alignment:
| Q |
18 |
ataaccaggctctcataagtcataccatatttgtcttatagggcacaagagtgtgtatgatagctattgtagatacgctatacaagattctagctatgac |
117 |
Q |
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| T |
3425593 |
ataaccaggctctcataagtcataccatatttgtcttataggacacaagagtgtgtatgatagctattgtagatacgctatacaagattctagctatgac |
3425494 |
T |
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| Q |
118 |
agttaattatggataactaacaagataacttgctacacaagttatctctgtgaatgacactaacttccttattttcatggtcaatacaaggcaacaatga |
217 |
Q |
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| T |
3425493 |
agttaattatggataactaacaagataacttgctacacaagttatctctgtgaatgacactaacttccttattttcatggtcaatacaaggcaacaatga |
3425394 |
T |
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| Q |
218 |
cagaactcaaactcaaagatacggtaacaggatttttgagaatttttccctaaaattgcaatagcagacatcaaatcacaacggtaccgggatagcacca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3425393 |
cagaactcaaactcaaagatacggtaacaggatttttgagaatttttccctaaaattgcaatagcagatatcaaatcacaacggtaccgggatagcacca |
3425294 |
T |
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| Q |
318 |
gcgccgcaatggcgctgctttttaaccactaatataggccgctagtgatgatactctcaatggcgcttttcgggcctatg |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425293 |
gcgccgcaatggcgctgctttttaaccactaatataggccgctagtgatgatactctcaatggcgcttttcgggcctatg |
3425214 |
T |
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