View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18245_low_1 (Length: 878)

Name: NF18245_low_1
Description: NF18245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18245_low_1
NF18245_low_1
[»] chr1 (19 HSPs)
chr1 (14-862)||(32899697-32900545)
chr1 (147-278)||(26828436-26828564)
chr1 (547-628)||(6936332-6936413)
chr1 (549-627)||(40917802-40917879)
chr1 (549-621)||(22515827-22515898)
chr1 (231-319)||(35811845-35811932)
chr1 (549-621)||(51410073-51410144)
chr1 (547-621)||(17831460-17831534)
chr1 (551-621)||(42359391-42359460)
chr1 (549-622)||(32461393-32461465)
chr1 (547-595)||(1704933-1704981)
chr1 (201-249)||(16424929-16424977)
chr1 (549-621)||(37598879-37598950)
chr1 (588-628)||(42004920-42004960)
chr1 (549-627)||(9828097-9828174)
chr1 (549-627)||(18556385-18556462)
chr1 (549-627)||(47989550-47989627)
chr1 (549-598)||(21365992-21366041)
chr1 (141-182)||(35811969-35812010)
[»] chr5 (15 HSPs)
chr5 (141-285)||(6329066-6329210)
chr5 (141-289)||(21256801-21256948)
chr5 (569-628)||(26205714-26205773)
chr5 (210-289)||(31897935-31898014)
chr5 (550-627)||(21542083-21542159)
chr5 (549-626)||(39698595-39698671)
chr5 (571-628)||(43554567-43554623)
chr5 (549-627)||(21522803-21522880)
chr5 (549-627)||(21533369-21533446)
chr5 (549-622)||(17393305-17393378)
chr5 (551-622)||(30502330-30502400)
chr5 (551-622)||(30542673-30542743)
chr5 (551-621)||(21190998-21191067)
chr5 (572-613)||(21137748-21137789)
chr5 (77-142)||(36491641-36491706)
[»] chr7 (18 HSPs)
chr7 (141-315)||(24118200-24118374)
chr7 (216-292)||(21510353-21510429)
chr7 (549-664)||(7133212-7133336)
chr7 (547-627)||(24339695-24339774)
chr7 (141-302)||(22350512-22350673)
chr7 (572-628)||(5938518-5938574)
chr7 (579-658)||(9199401-9199481)
chr7 (549-615)||(5409771-5409836)
chr7 (549-595)||(9778578-9778624)
chr7 (558-615)||(12278888-12278945)
chr7 (583-628)||(23930265-23930310)
chr7 (549-621)||(598256-598327)
chr7 (573-625)||(25239656-25239708)
chr7 (550-622)||(32287404-32287475)
chr7 (548-628)||(38804488-38804568)
chr7 (232-316)||(39048805-39048889)
chr7 (552-593)||(8842282-8842323)
chr7 (548-621)||(21880200-21880272)
[»] chr4 (21 HSPs)
chr4 (164-289)||(29866004-29866129)
chr4 (141-281)||(5199050-5199187)
chr4 (549-621)||(53381530-53381602)
chr4 (544-627)||(7012119-7012202)
chr4 (141-194)||(4848602-4848655)
chr4 (547-628)||(24343553-24343634)
chr4 (141-284)||(49583206-49583348)
chr4 (549-621)||(23292926-23292997)
chr4 (550-627)||(30982808-30982884)
chr4 (152-226)||(4151324-4151398)
chr4 (549-615)||(17876219-17876285)
chr4 (549-615)||(18513175-18513241)
chr4 (548-609)||(11931350-11931411)
chr4 (572-628)||(944625-944681)
chr4 (549-621)||(12895214-12895285)
chr4 (566-626)||(20521802-20521862)
chr4 (546-628)||(3144584-3144665)
chr4 (547-621)||(49431074-49431147)
chr4 (572-621)||(10133756-10133805)
chr4 (155-288)||(13134789-13134922)
chr4 (548-621)||(34306743-34306815)
[»] chr6 (14 HSPs)
chr6 (549-658)||(34446572-34446690)
chr6 (547-621)||(34595182-34595255)
chr6 (547-627)||(9107297-9107376)
chr6 (549-627)||(16766750-16766827)
chr6 (552-621)||(32978842-32978910)
chr6 (547-627)||(8714033-8714112)
chr6 (549-621)||(28152146-28152217)
chr6 (552-615)||(12235462-12235525)
chr6 (549-628)||(17168397-17168476)
chr6 (159-252)||(28032147-28032239)
chr6 (141-211)||(5263491-5263561)
chr6 (569-627)||(9522944-9523001)
chr6 (550-604)||(31384994-31385048)
chr6 (550-595)||(31959223-31959268)
[»] chr8 (15 HSPs)
chr8 (549-627)||(29510233-29510310)
chr8 (147-279)||(6196477-6196609)
chr8 (549-622)||(17751702-17751775)
chr8 (549-622)||(17760689-17760762)
chr8 (561-621)||(14513120-14513180)
chr8 (549-627)||(15816058-15816135)
chr8 (549-627)||(22652029-22652106)
chr8 (549-615)||(39820482-39820547)
chr8 (549-614)||(4673354-4673418)
chr8 (549-626)||(34450961-34451037)
chr8 (549-622)||(38487157-38487230)
chr8 (550-621)||(13009423-13009493)
chr8 (95-142)||(20762740-20762787)
chr8 (231-321)||(7411461-7411551)
chr8 (547-593)||(13436908-13436954)
[»] scaffold0652 (1 HSPs)
scaffold0652 (550-621)||(403-473)
[»] chr2 (13 HSPs)
chr2 (549-627)||(37419796-37419873)
chr2 (566-621)||(30563468-30563523)
chr2 (551-621)||(2438661-2438730)
chr2 (548-622)||(24009342-24009415)
chr2 (547-620)||(26769571-26769643)
chr2 (549-621)||(15972921-15972992)
chr2 (549-621)||(18840953-18841024)
chr2 (551-595)||(42832234-42832278)
chr2 (550-621)||(28596517-28596587)
chr2 (568-622)||(5367239-5367292)
chr2 (549-615)||(18889519-18889585)
chr2 (551-621)||(23354926-23354995)
chr2 (549-621)||(11307934-11308004)
[»] chr3 (24 HSPs)
chr3 (549-621)||(52369834-52369906)
chr3 (549-624)||(25074839-25074914)
chr3 (550-620)||(37077418-37077488)
chr3 (231-289)||(44652818-44652876)
chr3 (549-622)||(40993275-40993347)
chr3 (232-296)||(51341572-51341636)
chr3 (549-621)||(55401123-55401194)
chr3 (549-627)||(21211335-21211413)
chr3 (141-190)||(44652691-44652740)
chr3 (550-621)||(15999951-16000027)
chr3 (551-615)||(24204983-24205047)
chr3 (566-617)||(303200-303251)
chr3 (549-623)||(2408590-2408664)
chr3 (551-621)||(4987222-4987291)
chr3 (549-627)||(8039259-8039337)
chr3 (547-621)||(20503513-20503586)
chr3 (549-595)||(34185052-34185098)
chr3 (549-595)||(51206293-51206339)
chr3 (555-628)||(12704597-12704670)
chr3 (549-626)||(14209167-14209243)
chr3 (571-628)||(25651987-25652044)
chr3 (566-615)||(26665189-26665238)
chr3 (549-626)||(27903680-27903757)
chr3 (551-604)||(28918067-28918120)
[»] scaffold0003 (1 HSPs)
scaffold0003 (547-627)||(241647-241726)
[»] scaffold0083 (1 HSPs)
scaffold0083 (547-621)||(45468-45541)
[»] scaffold0053 (1 HSPs)
scaffold0053 (547-621)||(8846-8919)
[»] scaffold0136 (1 HSPs)
scaffold0136 (549-626)||(3778-3854)
[»] scaffold0098 (1 HSPs)
scaffold0098 (232-289)||(45919-45976)
[»] scaffold0019 (1 HSPs)
scaffold0019 (549-626)||(71779-71855)


Alignment Details
Target: chr1 (Bit Score: 789; Significance: 0; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 14 - 862
Target Start/End: Complemental strand, 32900545 - 32899697
Alignment:
Q  14 atcaggatcttgtacttccaatgctacttgaatgcaattctagtagcagttgcggtggtgttaaggattttgcgattatgactgttacggatgttatgtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||    
T  32900545 atcaggatcttgtacttccaatgctacttgaatgcaattctagtagcagttgcggtggtgttaaggattttgcgataatgactgttaaggatgttgtgtt 32900446  T
Q  114 acggattgcggtcgtcacggtgtgaattataataacttaatttctcattgtttcttcataatttcataactacaattctttacatacttttttaatgaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32900445 acggattgcggtcgtcacggtgtgaattataataacttaatttctcattgtttcttcataatttcataactacaattctttacatacttttttaatgaat 32900346  T
Q  214 tcgtttcttctaagagccaaattaaccactaataaactcgggttttaatgtttttagaagagacaagagcataaaataaccaagtgagacaataactttg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32900345 tcgtttcttctaagagccaaattaaccactaataaactcgggttttaatgtttttagaagagacaagagcataaaataaccaagtgagacaataactttg 32900246  T
Q  314 ttccctaccacttgttgaggccgtcacaacgttttgtcgcggcgcagcagtgttttgtcccagtcgtttcggtgattttttatcactgtattaaatcgga 413  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  32900245 ttccctaccacttgttgaggccgtcacaacgttttgtcgcgacgtagcagtgttttgtcccagttgtttccgtgattttttatcactgtattaaatcgga 32900146  T
Q  414 taaaaacagtattggacactacctaaacctttttgtcgctgtcgtttttgctgtaaaggactgttttttagaccttgagacctaacttggagaagatatt 513  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32900145 taaaaacggtattggacactacctaaacctttttgtcgctgtcgtttttgctgtaaaggactgttttttagaccttgagacctaacttggagaagatatt 32900046  T
Q  514 attcccattcccatcatcctaacaactatgaatatctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgac 613  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || | |||||||||||||||    
T  32900045 attcccattcccatcatcctaacaactatgaatatctatgaagcaaggacaatcctcggattaggggtgtcccggtgtccgacatgcgtcggtgtccgac 32899946  T
Q  614 accgacacaacacctctgaataatgtcattttctcaaattattatatgtgtgagtgtctgtatctgtgcttcatagttgaatatccttcgattactatcc 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32899945 accgacacaacacctctgaataatgtcattttctcaaattattatatgtatcagtgtctgtatctgtgcttcatagttgaatatccttcgattactatcc 32899846  T
Q  714 ttcaattaagacaactaggtaagattcataaactgattttgctgatccaacaaacctatgtcaattaggtaaacaactcattattgaattttctatacaa 813  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32899845 ttcaattaagacaactaggtaagactcataaactgattttgctgatccaacaaacctatgtcaattaggtaaacaactcattattgaattttctatacaa 32899746  T
Q  814 aagatacatttgatccagtcatggcaacattatgattattcactatatt 862  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32899745 aagatacatttgatccagtcatggcaacattatgattattcactatatt 32899697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 147 - 278
Target Start/End: Complemental strand, 26828564 - 26828436
Alignment:
Q  147 aacttaatttctcattgtttcttcataatttcataactacaattctttacatacttttttaatgaattcgtttcttctaagagccaaattaaccactaat 246  Q
    |||||||||||||||||||| ||||||| || ||||||| || |||||  ||| |||| ||||||||| | ||||||| | |  |||| |||||||| ||    
T  26828564 aacttaatttctcattgttttttcataagttaataactataactcttt--ataattttgtaatgaatttg-ttcttcttaaaatcaaactaaccactgat 26828468  T
Q  247 aaactcgggttttaatgtttttagaagagaca 278  Q
    ||| || | |||||||||||||||||||||||    
T  26828467 aaattcagattttaatgtttttagaagagaca 26828436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 547 - 628
Target Start/End: Original strand, 6936332 - 6936413
Alignment:
Q  547 atctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacct 628  Q
    |||||||||||| ||||| |||| |||||| |||| | | ||||||||||| ||||||||||||||||| ||||| ||||||    
T  6936332 atctatgaagcatggacactcctcggattaagggtattctggtgtcggatatgcgtcggtgtccgacacagacacgacacct 6936413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 549 - 627
Target Start/End: Complemental strand, 40917879 - 40917802
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    |||||||||| ||||| |||| |||||||| |||||||||||||||| ||| ||| |||||| |||||||||| |||||    
T  40917879 ctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccaacaccgacacgacacc 40917802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 621
Target Start/End: Original strand, 22515827 - 22515898
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||| ||||| |||| |||||||| ||||| |||||||||||| | ||| |||||||||||||||||    
T  22515827 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtc-gtgtccgacaccgacac 22515898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 319
Target Start/End: Complemental strand, 35811932 - 35811845
Alignment:
Q  231 caaattaaccactaataaactcgggttttaatgtttttagaagagacaagagcataaaataaccaagtgagacaataactttgttccct 319  Q
    ||||| |||||| |||||| |  ||||||||| ||||||||||||| |||||||||||| | |||| ||||||||||| ||| ||||||    
T  35811932 caaatgaaccaccaataaatttaggttttaat-tttttagaagagaaaagagcataaaaaatccaaatgagacaataaatttattccct 35811845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 621
Target Start/End: Complemental strand, 51410144 - 51410073
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||| | | | ||||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||    
T  51410144 ctatgaagcacgaatactccttggattaggcgtgtctcggtgtcggatacgtgtc-gtgtccgacaccgacac 51410073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 547 - 621
Target Start/End: Original strand, 17831460 - 17831534
Alignment:
Q  547 atctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    ||||||||| || ||||| ||||  ||||||| |||||||||||||||| ||  ||||||||||||||| |||||    
T  17831460 atctatgaaacatggacactcctaagattaggcgtgtcccggtgtcggacacatgtcggtgtccgacactgacac 17831534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 621
Target Start/End: Original strand, 42359391 - 42359460
Alignment:
Q  551 atgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||| ||||| |||| |||||||| |||||||||||||||| || ||||  ||||||||||||||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacacgtc-ttgtccgacaccgacac 42359460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 622
Target Start/End: Original strand, 32461393 - 32461465
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacaca 622  Q
    |||||||||| ||||| | ||||||||||| ||||||| ||||| || ||| ||| ||||||||||||||||||    
T  32461393 ctatgaagcacggacacttcttggattaggcgtgtcccagtgtcagacacgtgtc-gtgtccgacaccgacaca 32461465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 595
Target Start/End: Original strand, 1704933 - 1704981
Alignment:
Q  547 atctatgaagcaaggacaatccttggattaggggtgtcccggtgtcgga 595  Q
    |||||||||||| ||||| ||||||||||||| ||||| ||||||||||    
T  1704933 atctatgaagcatggacactccttggattaggcgtgtctcggtgtcgga 1704981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 16424929 - 16424977
Alignment:
Q  201 ttttttaatgaattcgtttcttctaagagccaaattaaccactaataaa 249  Q
    |||| ||||||||| ||||||||||||| |||| |||||||||||||||    
T  16424929 ttttgtaatgaatttgtttcttctaagaaccaatttaaccactaataaa 16424977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 549 - 621
Target Start/End: Complemental strand, 37598950 - 37598879
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||| ||||| |||| |||||||| |||||||  ||||||| ||| |||| ||||||||||||||||    
T  37598950 ctatgaagcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtcg-tgtccgacaccgacac 37598879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 588 - 628
Target Start/End: Original strand, 42004920 - 42004960
Alignment:
Q  588 gtgtcggatacgcgtcggtgtccgacaccgacacaacacct 628  Q
    |||||||| | ||||||||||||||||||||||||||||||    
T  42004920 gtgtcggacatgcgtcggtgtccgacaccgacacaacacct 42004960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 549 - 627
Target Start/End: Complemental strand, 9828174 - 9828097
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    |||||||||| ||||| |||| |||||||  |||||||||||||||| ||| ||| ||||| ||||| ||||| |||||    
T  9828174 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtc-gtgtctgacacggacacgacacc 9828097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 549 - 627
Target Start/End: Original strand, 18556385 - 18556462
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    |||||||||| ||||| | || |||||||| ||||||| |||||||||||| ||||| ||| ||||||| ||| |||||    
T  18556385 ctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggatacgtgtcgg-gtctgacaccgtcacgacacc 18556462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 549 - 627
Target Start/End: Complemental strand, 47989627 - 47989550
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    |||||||||| ||||| |||| |||||||| |||||||| |||| || | | |||| |||||||||||||||| |||||    
T  47989627 ctatgaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcg-tgtccgacaccgacacgacacc 47989550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 598
Target Start/End: Original strand, 21365992 - 21366041
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatac 598  Q
    |||||||||| ||||| |||| |||||||| ||||| |||||||||||||    
T  21365992 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatac 21366041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 35812010 - 35811969
Alignment:
Q  141 tataataacttaatttctcattgtttcttcataatttcataa 182  Q
    |||||||||||||||||||| ||||||||| ||||| |||||    
T  35812010 tataataacttaatttctcactgtttcttcttaattccataa 35811969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 4e-28; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 141 - 285
Target Start/End: Complemental strand, 6329210 - 6329066
Alignment:
Q  141 tataataacttaatttctcattgtttcttcataatttcataactacaattctttacatacttttttaatgaattcgtttcttctaagagccaaattaacc 240  Q
    |||||||||||||| ||||| | |||||| |||||||||||||   |||||||| |||| ||||||| |||||| ||||| ||||| | |||||||| ||    
T  6329210 tataataacttaatatctcaatctttctttataatttcataacggtaattcttttcataattttttagtgaatttgtttcatctaaaaaccaaattagcc 6329111  T
Q  241 actaataaactcgggttttaatgtttttagaagagacaagagcat 285  Q
    ||||||||| ||   ||||||| ||||||||||||||||||||||    
T  6329110 actaataaattcaaattttaatctttttagaagagacaagagcat 6329066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 141 - 289
Target Start/End: Original strand, 21256801 - 21256948
Alignment:
Q  141 tataataacttaatttctcattgtttcttcataatttcataactacaattctttacatacttttttaatgaattcgtttcttctaagagccaaattaacc 240  Q
    |||||||||||||||||| ||||||||||||| ||||| ||| |  | || | | |||| |||| |||||||| || ||||||||| | |||||||||||    
T  21256801 tataataacttaatttcttattgtttcttcatgatttcttaagtgtagttttgttcataattttctaatgaat-cggttcttctaaaaaccaaattaacc 21256899  T
Q  241 actaataaactcgggttttaatgtttttagaagagacaagagcataaaa 289  Q
    ||||| ||  ||  |||| ||||||||||||||||||||||| ||||||    
T  21256900 actaaaaagttcatgtttcaatgtttttagaagagacaagagtataaaa 21256948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 569 - 628
Target Start/End: Original strand, 26205714 - 26205773
Alignment:
Q  569 ttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacct 628  Q
    |||||||| | ||||||||||||||||||||||| ||||||||||||| |||| ||||||    
T  26205714 ttggattacgtgtgtcccggtgtcggatacgcgttggtgtccgacaccaacacgacacct 26205773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 210 - 289
Target Start/End: Complemental strand, 31898014 - 31897935
Alignment:
Q  210 gaattcgtttcttctaagagccaaattaaccactaataaactcgggttttaatgtttttagaagagacaagagcataaaa 289  Q
    ||||| ||||||||||| || || |||||||| |||||||  | | ||||||||||||||||||||| ||||||||||||    
T  31898014 gaatttgtttcttctaaaagtcatattaaccattaataaatccagattttaatgtttttagaagagataagagcataaaa 31897935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 550 - 627
Target Start/End: Complemental strand, 21542159 - 21542083
Alignment:
Q  550 tatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    ||||| ||| ||||| |||||||||| || |||||||||||||||| ||| ||| ||||||||||||||||| |||||    
T  21542159 tatgatgcacggacattccttggattcggcgtgtcccggtgtcggacacgtgtc-gtgtccgacaccgacacgacacc 21542083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 549 - 626
Target Start/End: Complemental strand, 39698671 - 39698595
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacac 626  Q
    |||||||||| ||||| |||| |||||||| ||||| |||||||||||||  ||| ||||||||||||||||| ||||    
T  39698671 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatacatgtc-gtgtccgacaccgacacgacac 39698595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 571 - 628
Target Start/End: Complemental strand, 43554623 - 43554567
Alignment:
Q  571 ggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacct 628  Q
    |||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  43554623 ggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccgacaccgacacgacacct 43554567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 627
Target Start/End: Complemental strand, 21522880 - 21522803
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    |||||| ||| ||||| || |||||||||| ||||||||||| |||| ||| ||| ||||||||||||||||| |||||    
T  21522880 ctatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtc-gtgtccgacaccgacacgacacc 21522803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 627
Target Start/End: Complemental strand, 21533446 - 21533369
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    |||||| ||| ||||| || |||||||||| ||||||||||| |||| ||| ||| ||||||||||||||||| |||||    
T  21533446 ctatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtc-gtgtccgacaccgacacgacacc 21533369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 622
Target Start/End: Original strand, 17393305 - 17393378
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacaca 622  Q
    |||||||||| | ||| |||| |||||| | |||||||||||||||| || |||||||||||  ||||||||||    
T  17393305 ctatgaagcacgaacattcctcggattacgagtgtcccggtgtcggacacacgtcggtgtccaccaccgacaca 17393378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 551 - 622
Target Start/End: Original strand, 30502330 - 30502400
Alignment:
Q  551 atgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacaca 622  Q
    |||||||| | |||||||||||||||||  |||||| |||||||| | | ||| ||||||||||||||||||    
T  30502330 atgaagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtc-gtgtccgacaccgacaca 30502400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 551 - 622
Target Start/End: Original strand, 30542673 - 30542743
Alignment:
Q  551 atgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacaca 622  Q
    |||||||| | |||||||||||||||||  |||||| |||||||| | | ||| ||||||||||||||||||    
T  30542673 atgaagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtc-gtgtccgacaccgacaca 30542743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 551 - 621
Target Start/End: Original strand, 21190998 - 21191067
Alignment:
Q  551 atgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||| ||||| |||| |||||||| ||||||||| |||||| ||| || | ||||||||||||||||    
T  21190998 atgaagcacggacactcctcggattaggcgtgtcccggagtcggacacgtgttg-tgtccgacaccgacac 21191067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 572 - 613
Target Start/End: Complemental strand, 21137789 - 21137748
Alignment:
Q  572 gattaggggtgtcccggtgtcggatacgcgtcggtgtccgac 613  Q
    ||||||| |||||||||||||||| |||||| ||||||||||    
T  21137789 gattaggtgtgtcccggtgtcggacacgcgttggtgtccgac 21137748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 36491706 - 36491641
Alignment:
Q  77 aggattttgcgattatgactgttacggatgttatgttacggattgcggtcgtcacggtgtgaatta 142  Q
    ||||||||||||||   |||||||||||||||    |||||||| |||| ||||||||||||||||    
T  36491706 aggattttgcgatttcaactgttacggatgttgcactacggattacggttgtcacggtgtgaatta 36491641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 141 - 315
Target Start/End: Complemental strand, 24118374 - 24118200
Alignment:
Q  141 tataataacttaatttctcattgtttcttcataatttcataactacaattcttta-catacttttttaatgaattcgtttcttctaagagccaaattaac 239  Q
    ||||||||||||||||||||||||||||||||| | | ||||||     |||||  |||| |||| |||||| || |||||||||||   ||||||||||    
T  24118374 tataataacttaatttctcattgtttcttcatattgt-ataactgttgctctttttcataattttgtaatgactttgtttcttctaaacaccaaattaac 24118276  T
Q  240 cactaataaactcgggttttaatgtttttagaagagacaagagcataaaataaccaagtgagacaataactttgtt 315  Q
    |||| ||||| || ||||||||||||||||||||||||||||| |||||| ||  || || |||||||| ||||||    
T  24118275 cactgataaattcaggttttaatgtttttagaagagacaagagtataaaagaaaaaaatgtgacaataattttgtt 24118200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 21510353 - 21510429
Alignment:
Q  216 gtttcttctaagagccaaattaaccactaataaactcgggttttaatgtttttagaagagacaagagcataaaataa 292  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||| | |||||| |||||||||| |||||||||||    
T  21510353 gtttcttctaaaaaccaaattaaccactaataaactcaggttttactatttttaaaagagacaagtgcataaaataa 21510429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 549 - 664
Target Start/End: Original strand, 7133212 - 7133336
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacct---------ctgaataatgt 639  Q
    |||||||||| ||||  ||||  ||||||| ||||||| |||||||| |||||||||||||||||||||||||| |||||         |||||| ||||    
T  7133212 ctatgaagcacggacgctcctcagattaggtgtgtcccagtgtcggacacgcgtcggtgtccgacaccgacacaccacctatgattacactgaattatgt 7133311  T
Q  640 cattttctcaaattattatatgtgt 664  Q
    |||||||||||||||| || |||||    
T  7133312 cattttctcaaattatcatctgtgt 7133336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 547 - 627
Target Start/End: Complemental strand, 24339774 - 24339695
Alignment:
Q  547 atctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    |||||||||||| || || |||| |||||||| |||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  24339774 atctatgaagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtc-gtgtccgacaccgacacgacacc 24339695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 302
Target Start/End: Original strand, 22350512 - 22350673
Alignment:
Q  141 tataataacttaatttctcattgtttcttcataatttcataactacaattctttacatacttttttaatgaattcgtttcttctaagagccaaattaacc 240  Q
    |||||||||||||  ||||||| | ||||  ||||||||||||   |||||||| |||| ||||| | |||||| ||||  | ||| |  || || ||||    
T  22350512 tataataacttaaaatctcattttgtctttgtaatttcataaccgtaattcttttcataatttttcagtgaatttgttttatttaaaaatcatatcaacc 22350611  T
Q  241 actaataaactcgggttttaatgtttttagaagagacaagagcataaaataaccaagtgaga 302  Q
    ||||||||| ||  |||| |||||||||| |||||||| |||||||||| || ||| |||||    
T  22350612 actaataaattcacgtttcaatgtttttaaaagagacacgagcataaaaaaatcaaatgaga 22350673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 572 - 628
Target Start/End: Complemental strand, 5938574 - 5938518
Alignment:
Q  572 gattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacct 628  Q
    ||||||| |||| ||||||||||| |||| |||||||| ||||||||||||||||||    
T  5938574 gattaggtgtgttccggtgtcggacacgcatcggtgtctgacaccgacacaacacct 5938518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 658
Target Start/End: Original strand, 9199401 - 9199481
Alignment:
Q  579 ggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacctctg-aataatgtcattttctcaaattattat 658  Q
    ||||||| ||||||| | |||  ||| |||||||||||||||||||| || || ||| |||||||||||||||||||||||    
T  9199401 ggtgtcctggtgtcgaacacgtatcgatgtccgacaccgacacaacatctatgaaatcatgtcattttctcaaattattat 9199481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 615
Target Start/End: Original strand, 5409771 - 5409836
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacac 615  Q
    |||||||||| ||||| |||| |||||||| |||||||||||||||| ||| ||| |||||||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacac 5409836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 595
Target Start/End: Complemental strand, 9778624 - 9778578
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcgga 595  Q
    |||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  9778624 ctatgaagcacggacactccttggattaggcgtgtcccggtgtcgga 9778578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 615
Target Start/End: Complemental strand, 12278945 - 12278888
Alignment:
Q  558 aaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacac 615  Q
    ||||||| |||| |||||||| ||||||||||||| || |||||| ||||||||||||    
T  12278945 aaggacactcctaggattaggtgtgtcccggtgtcagacacgcgttggtgtccgacac 12278888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 628
Target Start/End: Complemental strand, 23930310 - 23930265
Alignment:
Q  583 tcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacct 628  Q
    ||||||||||||| |||| ||||| |||||||||||||||||||||    
T  23930310 tcccggtgtcggacacgcatcggtatccgacaccgacacaacacct 23930265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 549 - 621
Target Start/End: Complemental strand, 598327 - 598256
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||| ||||| | || |||||||| |||||||||||||||| ||| ||| ||||| |||||||||||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtctgacaccgacac 598256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 573 - 625
Target Start/End: Original strand, 25239656 - 25239708
Alignment:
Q  573 attaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaaca 625  Q
    ||||||||||||| ||||||||| || ||||  ||||||||||||||||||||    
T  25239656 attaggggtgtcctggtgtcggacacacgtcaatgtccgacaccgacacaaca 25239708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 550 - 622
Target Start/End: Original strand, 32287404 - 32287475
Alignment:
Q  550 tatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacaca 622  Q
    ||||||||| ||||| |||| |||||||| |||||||||||||||| ||  |||  |||||||||||||||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacttgtc-atgtccgacaccgacaca 32287475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 548 - 628
Target Start/End: Original strand, 38804488 - 38804568
Alignment:
Q  548 tctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacct 628  Q
    |||||||||||   ||| |||| ||||||||  |||||||| |||||| || ||||||||||||||||| |||| ||||||    
T  38804488 tctatgaagcacatacactcctcggattaggcatgtcccggcgtcggacacacgtcggtgtccgacaccaacacgacacct 38804568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 39048805 - 39048889
Alignment:
Q  232 aaattaaccactaataaactcgggttttaatgtttttagaagagacaagagcataaaataaccaagtgagacaataactttgttc 316  Q
    |||| ||||||| ||||| || | |||||| | |||||||||||||||||||||||||  | ||| ||||||||| | |||||||    
T  39048805 aaatcaaccactgataaattcagattttaagggttttagaagagacaagagcataaaaccaacaaatgagacaatcaatttgttc 39048889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 593
Target Start/End: Original strand, 8842282 - 8842323
Alignment:
Q  552 tgaagcaaggacaatccttggattaggggtgtcccggtgtcg 593  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||    
T  8842282 tgaagcacggacactccttggattaggcgtgtcccggtgtcg 8842323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 621
Target Start/End: Complemental strand, 21880272 - 21880200
Alignment:
Q  548 tctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    ||||||||||| ||||| | || |||||||| |||||| ||||||||| | | ||| |||||||||||||||||    
T  21880272 tctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtc-gtgtccgacaccgacac 21880200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 6e-24; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 29866129 - 29866004
Alignment:
Q  164 tttcttcataatttcataactacaattctttacatacttttttaatgaattcgtttcttctaagagccaaattaaccactaataaactcgggttttaatg 263  Q
    |||||||||||||||||| ||  |||||||| |||| ||||  |||||||| ||||| | ||| | ||||||||||||||||  || || ||||||||||    
T  29866129 tttcttcataatttcatacctgtaattcttttcataattttgcaatgaatttgtttcgtttaaaaaccaaattaaccactaactaattcaggttttaatg 29866030  T
Q  264 tttttagaagagacaagagcataaaa 289  Q
    |||| |||||||||||||||||||||    
T  29866029 ttttaagaagagacaagagcataaaa 29866004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 141 - 281
Target Start/End: Original strand, 5199050 - 5199187
Alignment:
Q  141 tataataacttaatttctcattgtttcttcataatttcataactacaattctttacatacttttttaatgaattcgtttcttctaagagccaaattaacc 240  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||| |||| |||||||||  |||||| ||  | | |||||||||    
T  5199050 tataataacttaatttctcattgtttcttcataatttcattactataattcttttcataattttgtaatgaatt-ttttcttatataaacaaaattaacc 5199148  T
Q  241 actaataaactcgggttttaatgtttttagaagagacaaga 281  Q
     |||||||| |  |||| ||||| |||||||||||||||||    
T  5199149 tctaataaa-ttaggttgtaatg-ttttagaagagacaaga 5199187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 549 - 621
Target Start/End: Original strand, 53381530 - 53381602
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||| ||||| |||| |||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  53381530 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtccgacaccgacac 53381602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 544 - 627
Target Start/End: Complemental strand, 7012202 - 7012119
Alignment:
Q  544 aatatctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    |||| |||||||||| ||||| |||| | |||||| ||  ||||||||||||||||||||||||||||||||||||||||||||    
T  7012202 aatagctatgaagcacggacactcctcgcattaggtgttccccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 7012119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 4848655 - 4848602
Alignment:
Q  141 tataataacttaatttctcattgtttcttcataatttcataactacaattcttt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  4848655 tataataacttaatttctcattgtttcttcataatttcataacaataattcttt 4848602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 547 - 628
Target Start/End: Complemental strand, 24343634 - 24343553
Alignment:
Q  547 atctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacct 628  Q
    |||||||||||| ||||| ||||  || |||| |||||||||||||||| ||||||||||||| ||||||||||| ||||||    
T  24343634 atctatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacgcgtcggtgtcggacaccgacacgacacct 24343553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 284
Target Start/End: Original strand, 49583206 - 49583348
Alignment:
Q  141 tataataacttaatttctcattgtttcttcataatttcataactacaattctttacatacttttttaatgaattcgtttcttctaagagccaaattaacc 240  Q
    ||||||| |||||||||||||| ||||||| ||||||||||  |  |||| ||| |||| |||  |||||||||  |||||||||  |  ||||||| ||    
T  49583206 tataatagcttaatttctcattatttcttcttaatttcatag-tgtaattattttcataatttagtaatgaatttatttcttctacaaatcaaattagcc 49583304  T
Q  241 actaataaactcgggttttaatgtttttagaagagacaagagca 284  Q
    ||||||||| ||  |||| |||||||| ||||||||||||||||    
T  49583305 actaataaattcatgtttcaatgttttaagaagagacaagagca 49583348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 549 - 621
Target Start/End: Original strand, 23292926 - 23292997
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||| ||||| |||| |||||||| |||||||||||||||| ||| ||| |||||||||||||||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacaccgacac 23292997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 550 - 627
Target Start/End: Original strand, 30982808 - 30982884
Alignment:
Q  550 tatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    ||||||||| ||||| || |||||||||| |||||||||||||||| ||| ||| ||||| ||||||||||| |||||    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtc-gtgtctgacaccgacacgacacc 30982884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 4151398 - 4151324
Alignment:
Q  152 aatttctcattgtttcttcataatttcataactacaattctttacatacttttttaatgaattcgtttcttctaa 226  Q
    |||||||| ||||||||||||||||||||||||  |||| ||| ||||  |||| |||||||| ||| |||||||    
T  4151398 aatttctcgttgtttcttcataatttcataactctaattattttcataacttttcaatgaatttgttacttctaa 4151324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 615
Target Start/End: Complemental strand, 17876285 - 17876219
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacac 615  Q
    ||||||||||  |||| ||||||||||||| |||||| ||||||||| | ||||||||||| |||||    
T  17876285 ctatgaagcacagacactccttggattaggtgtgtcctggtgtcggacaagcgtcggtgtctgacac 17876219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 615
Target Start/End: Original strand, 18513175 - 18513241
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacac 615  Q
    |||||||||| ||||| ||||  ||||||| |||||| ||||||||| || ||||||||||||||||    
T  18513175 ctatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacacacgtcggtgtccgacac 18513241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 609
Target Start/End: Complemental strand, 11931411 - 11931350
Alignment:
Q  548 tctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtc 609  Q
    ||||||||||| ||||| ||| ||||||||| |||||| ||||||||| | |||||||||||    
T  11931411 tctatgaagcacggacactccatggattaggtgtgtcctggtgtcggacatgcgtcggtgtc 11931350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 572 - 628
Target Start/End: Original strand, 944625 - 944681
Alignment:
Q  572 gattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacct 628  Q
    ||||||| |||||||||||||||| ||||||| |||| |||||| ||||| ||||||    
T  944625 gattaggtgtgtcccggtgtcggacacgcgtctgtgttcgacactgacacgacacct 944681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 549 - 621
Target Start/End: Original strand, 12895214 - 12895285
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||| | ||| |||| |||||||| |||||||| ||||||||||  |||| ||||||||||||||||    
T  12895214 ctatgaagcacgaacactcctcggattaggcgtgtcccgatgtcggatacatgtcg-tgtccgacaccgacac 12895285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 566 - 626
Target Start/End: Original strand, 20521802 - 20521862
Alignment:
Q  566 tccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacac 626  Q
    ||||||||||||| |||||  ||| ||||| | ||||||||||||||||||||||| ||||    
T  20521802 tccttggattaggcgtgtcatggtttcggacatgcgtcggtgtccgacaccgacacgacac 20521862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 546 - 628
Target Start/End: Original strand, 3144584 - 3144665
Alignment:
Q  546 tatctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacct 628  Q
    ||||||||||||| ||||| | || |||||||| ||||| || ||| ||| |||||| |||||| ||||||||||| ||||||    
T  3144584 tatctatgaagcacggacacttctcggattaggtgtgtctcg-tgttggacacgcgttggtgtctgacaccgacacgacacct 3144665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 547 - 621
Target Start/End: Complemental strand, 49431147 - 49431074
Alignment:
Q  547 atctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||| ||||| ||||| |||| |||| ||| |||||||||||| ||| ||| ||| |||||||||||||||||    
T  49431147 atctataaagcatggacactcctcggataaggcgtgtcccggtgttggacacgtgtc-gtgtccgacaccgacac 49431074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 572 - 621
Target Start/End: Complemental strand, 10133805 - 10133756
Alignment:
Q  572 gattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    ||||||| |||||| ||||||||| ||||||| ||||| |||||||||||    
T  10133805 gattaggtgtgtcctggtgtcggacacgcgtcagtgtctgacaccgacac 10133756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 288
Target Start/End: Complemental strand, 13134922 - 13134789
Alignment:
Q  155 ttctcattgtttcttcataatttcataactacaattctttacatacttttttaatgaattcgtttcttctaagagccaaattaaccactaataaactcgg 254  Q
    |||||||||| | |||||||||| ||||||  |||| |||  |||   || |||||||||  || ||||||| ||| ||||||||||||| |||| ||      
T  13134922 ttctcattgtgttttcataatttaataactgtaattatttttataaccttataatgaatttattacttctaaaagctaaattaaccactattaaattcaa 13134823  T
Q  255 gttttaatgtttttagaagagacaagagcataaa 288  Q
     |||||||||||||| || | |||||| ||||||    
T  13134822 attttaatgtttttaaaatatacaagaacataaa 13134789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 621
Target Start/End: Original strand, 34306743 - 34306815
Alignment:
Q  548 tctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    ||||||||||| | ||| ||||  ||||||| ||||| |||||||||| ||| ||| |||||||||||||||||    
T  34306743 tctatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacac 34306815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 9e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 549 - 658
Target Start/End: Complemental strand, 34446690 - 34446572
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacct---------ctgaataatgt 639  Q
    |||||||||| ||||| ||||||||||||| ||||||| ||||| |||||||||||||||  ||||||||||| ||||||         |||||| ||||    
T  34446690 ctatgaagcacggacactccttggattaggtgtgtcccagtgtcagatacgcgtcggtgttggacaccgacacgacacctatgattacactgaattatgt 34446591  T
Q  640 cattttctcaaattattat 658  Q
    |||||||||||||||||||    
T  34446590 cattttctcaaattattat 34446572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 547 - 621
Target Start/End: Complemental strand, 34595255 - 34595182
Alignment:
Q  547 atctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||||| ||||| |||| |||||||| ||||||||||||| || ||| ||| |||||||||||||||||    
T  34595255 atctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtc-gtgtccgacaccgacac 34595182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 547 - 627
Target Start/End: Original strand, 9107297 - 9107376
Alignment:
Q  547 atctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    |||||||||||| || || |||| |||||||| |||||||||||||||| || |||  ||||||||||||||||| |||||    
T  9107297 atctatgaagcacgggcactcctcggattaggtgtgtcccggtgtcggacacacgt-tgtgtccgacaccgacacgacacc 9107376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 627
Target Start/End: Complemental strand, 16766827 - 16766750
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    |||||||||| ||||| || | |||||||| |||||||||||||||| ||| ||  ||||||||||||||||| |||||    
T  16766827 ctatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgt-tgtgtccgacaccgacacgacacc 16766750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 621
Target Start/End: Original strand, 32978842 - 32978910
Alignment:
Q  552 tgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    ||||||| ||||| ||||||||||||  |||||||||||||||| | | ||| |||||||||||||||||    
T  32978842 tgaagcacggacactccttggattagacgtgtcccggtgtcggacatgtgtc-gtgtccgacaccgacac 32978910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 627
Target Start/End: Complemental strand, 8714112 - 8714033
Alignment:
Q  547 atctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    ||||||||||||| |||| |||| ||||| || |||||||| ||||||| | | ||| ||||||||||||||||| |||||    
T  8714112 atctatgaagcaaagacactcctcggattgggcgtgtcccgatgtcggaaatgtgtc-gtgtccgacaccgacacgacacc 8714033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 549 - 621
Target Start/End: Complemental strand, 28152217 - 28152146
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||| | ||| |||| ||||||||  ||||||||||||||| ||| ||| |||||||||||||||||    
T  28152217 ctatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtc-gtgtccgacaccgacac 28152146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 615
Target Start/End: Original strand, 12235462 - 12235525
Alignment:
Q  552 tgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacac 615  Q
    ||||||| ||||| |  |||||||||||||||||||||| |||| || |||||||||| |||||    
T  12235462 tgaagcacggacactttttggattaggggtgtcccggtgccggacacacgtcggtgtcggacac 12235525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 628
Target Start/End: Original strand, 17168397 - 17168476
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacct 628  Q
    |||||||||||| ||| |||  |||||||||||||||  ||||  || ||| ||| ||||||||||||||||| ||||||    
T  17168397 ctatgaagcaagtacattccacggattaggggtgtcctagtgttagacacgtgtcagtgtccgacaccgacacgacacct 17168476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 252
Target Start/End: Original strand, 28032147 - 28032239
Alignment:
Q  159 cattgtttcttcataatttcataactacaattctttacatacttttttaatga-attcgtttcttctaagagccaaattaaccactaataaactc 252  Q
    ||||||||| ||||||||||||||||  |||| ||| ||||||||||||||||  || ||||||||||| |   |||||||| | ||||||||||    
T  28032147 cattgtttcatcataatttcataact--aattattttcatacttttttaatgatttttgtttcttctaaaaaataaattaactattaataaactc 28032239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 5263561 - 5263491
Alignment:
Q  141 tataataacttaatttctcattgtttcttcataatttcataactacaattctttacatacttttttaatga 211  Q
    |||| ||||||||||| |||||||||||| |||| |||||||||| |  ||||| |||| |||| ||||||    
T  5263561 tatactaacttaatttttcattgtttcttaataagttcataactatatctcttttcataattttgtaatga 5263491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 569 - 627
Target Start/End: Complemental strand, 9523001 - 9522944
Alignment:
Q  569 ttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    |||||||||| ||||| |||||||||| ||| |||||  ||||||||||||||||||||    
T  9523001 ttggattaggcgtgtctcggtgtcggacacgtgtcgga-tccgacaccgacacaacacc 9522944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 550 - 604
Target Start/End: Complemental strand, 31385048 - 31384994
Alignment:
Q  550 tatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcg 604  Q
    ||||||||| ||||| ||||||||||||| |||||||||||| ||| ||| ||||    
T  31385048 tatgaagcacggacactccttggattaggcgtgtcccggtgtaggacacgtgtcg 31384994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 595
Target Start/End: Complemental strand, 31959268 - 31959223
Alignment:
Q  550 tatgaagcaaggacaatccttggattaggggtgtcccggtgtcgga 595  Q
    ||||||||| ||||| |||| |||||||| ||||||||||||||||    
T  31959268 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcgga 31959223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 549 - 627
Target Start/End: Original strand, 29510233 - 29510310
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    |||||||||| ||||| |||| |||||||| |||||||||||||||| ||||||| ||||||||||||||||| |||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtc-gtgtccgacaccgacactacacc 29510310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 147 - 279
Target Start/End: Original strand, 6196477 - 6196609
Alignment:
Q  147 aacttaatttctcattgtttcttcataatttcataactacaattctttacatacttttttaatgaattcgtttcttctaagagccaaattaaccactaat 246  Q
    ||||||||||| |||||||||| |   ||||| ||| |  |||||||| ||||  || || ||||||| ||||||||||| | |||||||||||||||||    
T  6196477 aacttaatttcccattgtttctaccctatttcgtaatttaaattcttttcataacttattgatgaatttgtttcttctaaaaaccaaattaaccactaat 6196576  T
Q  247 aaactcgggttttaatgtttttagaagagacaa 279  Q
    |||    ||||||||||||||||||||| ||||    
T  6196577 aaatctaggttttaatgtttttagaagaaacaa 6196609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 549 - 622
Target Start/End: Complemental strand, 17751775 - 17751702
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacaca 622  Q
    |||||||||  ||||| |||| |||||||| ||||||||||||||| || ||||| ||||||||||||||||||    
T  17751775 ctatgaagcgcggacactcctcggattaggcgtgtcccggtgtcggctatgcgtctgtgtccgacaccgacaca 17751702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 549 - 622
Target Start/End: Complemental strand, 17760762 - 17760689
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacaca 622  Q
    |||||||||  ||||| |||| |||||||| ||||||||||||||| || ||||| ||||||||||||||||||    
T  17760762 ctatgaagcgcggacactcctcggattaggcgtgtcccggtgtcggctatgcgtctgtgtccgacaccgacaca 17760689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 561 - 621
Target Start/End: Original strand, 14513120 - 14513180
Alignment:
Q  561 gacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||| ||||||||||| |||| ||||||||||| | ||||||||||| |||||||||||    
T  14513120 gacaattcttggattaggtgtgttccggtgtcggacatgcgtcggtgtctgacaccgacac 14513180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 627
Target Start/End: Original strand, 15816058 - 15816135
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    |||||||||| ||||| | || |||||||| ||||||||||||||||| || ||| |||||||||||| |||| |||||    
T  15816058 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggattcgtgtc-gtgtccgacaccaacacgacacc 15816135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 627
Target Start/End: Complemental strand, 22652106 - 22652029
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    |||||||||| ||||| |||| |||||||  |||||||||||||||| ||  ||| ||||||||||||||||| |||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtc-gtgtccgacaccgacacgacacc 22652029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 615
Target Start/End: Complemental strand, 39820547 - 39820482
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacac 615  Q
    |||||||||| ||||| | || |||||||| |||||||| ||||||| |||||||||||||||||||    
T  39820547 ctatgaagcacggacacttctcggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccgacac 39820482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 614
Target Start/End: Original strand, 4673354 - 4673418
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgaca 614  Q
    ||||||||||  |||| ||||||||||||| |||| ||||||||||||| ||||| ||||||||||    
T  4673354 ctatgaagcacagacactccttggattaggcgtgttccggtgtcggatatgcgtc-gtgtccgaca 4673418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 626
Target Start/End: Original strand, 34450961 - 34451037
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacac 626  Q
    |||||||||| ||||| ||||||||| ||| ||||||| ||||| || ||| |||| |||||||||||||||| ||||    
T  34450961 ctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcg-tgtccgacaccgacacgacac 34451037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 622
Target Start/End: Original strand, 38487157 - 38487230
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacaca 622  Q
    ||||||||||  |||| |||| |||||| | |||||| ||||||||| |||||||||||||||| ||| |||||    
T  38487157 ctatgaagcacagacactcctcggattatgtgtgtccgggtgtcggacacgcgtcggtgtccgaaaccaacaca 38487230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 550 - 621
Target Start/End: Original strand, 13009423 - 13009493
Alignment:
Q  550 tatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    ||||||||| ||||  ||||||||||||| ||||||| |||||||| | ||||||||||| |||||| ||||    
T  13009423 tatgaagcacggacgctccttggattaggcgtgtccc-gtgtcggacaggcgtcggtgtctgacacctacac 13009493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 20762740 - 20762787
Alignment:
Q  95 ctgttacggatgttatgttacggattgcggtcgtcacggtgtgaatta 142  Q
    ||||||||||||||  ||||| ||||||||||||| ||||||||||||    
T  20762740 ctgttacggatgttgcgttactgattgcggtcgtcgcggtgtgaatta 20762787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 231 - 321
Target Start/End: Original strand, 7411461 - 7411551
Alignment:
Q  231 caaattaaccactaataaactcgggttttaatgtttttagaagagacaagagcataaaataaccaagtgagacaataactttgttccctac 321  Q
    ||||||||||||||||||| |  | | | ||||| |||||||||||  |||||||| || |||||| | ||||||||| ||||||| ||||    
T  7411461 caaattaaccactaataaattaagatctgaatgtctttagaagagaggagagcatacaaaaaccaaataagacaataaatttgttcactac 7411551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 547 - 593
Target Start/End: Original strand, 13436908 - 13436954
Alignment:
Q  547 atctatgaagcaaggacaatccttggattaggggtgtcccggtgtcg 593  Q
    ||||||||||||  |||| ||||||||||||| ||||||||||||||    
T  13436908 atctatgaagcacagacactccttggattaggcgtgtcccggtgtcg 13436954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 621
Target Start/End: Original strand, 403 - 473
Alignment:
Q  550 tatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    ||||||||| ||||| |||| |||||||| |||||||||||||||| ||||||| |||||||||||||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtc-gtgtccgacaccgacac 473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 549 - 627
Target Start/End: Complemental strand, 37419873 - 37419796
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    |||||||||| ||||| |||| |||||||| |||||||||||||||| |||| || ||||||||||||||||| |||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatc-gtgtccgacaccgacacgacacc 37419796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 566 - 621
Target Start/End: Complemental strand, 30563523 - 30563468
Alignment:
Q  566 tccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||||||| ||||| |||||||||||||| | |||||||||||| |||||    
T  30563523 tccttggattagggttgtcctggtgtcggatacgcctgggtgtccgacactgacac 30563468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 621
Target Start/End: Original strand, 2438661 - 2438730
Alignment:
Q  551 atgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||| ||||| |||| |||||||| |||||||||||||||| | | ||| |||||||||||||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtc-gtgtccgacaccgacac 2438730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 548 - 622
Target Start/End: Complemental strand, 24009415 - 24009342
Alignment:
Q  548 tctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacaca 622  Q
    ||||||||||| ||||| ||||||||| ||| ||||||| ||||| || ||| ||| ||||||||||||||||||    
T  24009415 tctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtc-gtgtccgacaccgacaca 24009342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 620
Target Start/End: Complemental strand, 26769643 - 26769571
Alignment:
Q  547 atctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgaca 620  Q
    |||||||||||| ||||| |||| |||||||| ||||||| |||||||| ||| ||| |||||||| |||||||    
T  26769643 atctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtc-gtgtccgataccgaca 26769571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 549 - 621
Target Start/End: Complemental strand, 15972992 - 15972921
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||| ||||| || | |||||||| ||||||||| |||||| ||| |||| ||||||||||||||||    
T  15972992 ctatgaagcacggacattcttcggattaggtgtgtcccggcgtcggacacgtgtcg-tgtccgacaccgacac 15972921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 549 - 621
Target Start/End: Original strand, 18840953 - 18841024
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||| ||||| |||| |||||||| |||||||||||||||| | | ||| ||||| |||||||||||    
T  18840953 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtc-gtgtctgacaccgacac 18841024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 551 - 595
Target Start/End: Original strand, 42832234 - 42832278
Alignment:
Q  551 atgaagcaaggacaatccttggattaggggtgtcccggtgtcgga 595  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||||    
T  42832234 atgaagcaaggacactccttggattaggcgtgtcccggagtcgga 42832278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 550 - 621
Target Start/End: Complemental strand, 28596587 - 28596517
Alignment:
Q  550 tatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    ||||||||| ||||| |||| |||||||| ||||||  |||||||| ||| |||| ||||||||||||||||    
T  28596587 tatgaagcacggacactcctcggattaggagtgtccgagtgtcggacacgtgtcg-tgtccgacaccgacac 28596517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 568 - 622
Target Start/End: Complemental strand, 5367292 - 5367239
Alignment:
Q  568 cttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacaca 622  Q
    ||||||||||| ||||||||| |||||||| | ||| ||||||||||||||||||    
T  5367292 cttggattaggcgtgtcccggagtcggatatgtgtc-gtgtccgacaccgacaca 5367239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 549 - 615
Target Start/End: Original strand, 18889519 - 18889585
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacac 615  Q
    ||||||||||  |||| | ||||| ||||| |||||| ||||||||| | |||||||||||||||||    
T  18889519 ctatgaagcagagacactacttgggttaggtgtgtccgggtgtcggacatgcgtcggtgtccgacac 18889585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 551 - 621
Target Start/End: Original strand, 23354926 - 23354995
Alignment:
Q  551 atgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||||||| |||| |||||||| ||||||| ||||| || ||| |||||||||| || |||||||    
T  23354926 atgaagcaaggacactcctcggattaggcgtgtccc-gtgtcagacacgggtcggtgtccaaccccgacac 23354995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 621
Target Start/End: Original strand, 11307934 - 11308004
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||| ||||| |||| |||||| | || ||  ||||||||| |||||||||||||| ||||||||||    
T  11307934 ctatgaagcacggacactcctcggattaagtgtttc--ggtgtcggacacgcgtcggtgtccaacaccgacac 11308004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 549 - 621
Target Start/End: Complemental strand, 52369906 - 52369834
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||| ||||| |||| ||| |||| |||||||||||| ||| |||||||||||||||| ||||||||    
T  52369906 ctatgaagcacggacactcctcggaataggtgtgtcccggtgttggacacgcgtcggtgtccgataccgacac 52369834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 549 - 624
Target Start/End: Complemental strand, 25074914 - 25074839
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaac 624  Q
    |||||||||| | ||| |||| |||||||| ||||||| |||||||| |||||| |||||| ||||||||||||||    
T  25074914 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacacaac 25074839  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 550 - 620
Target Start/End: Complemental strand, 37077488 - 37077418
Alignment:
Q  550 tatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgaca 620  Q
    ||||||||| ||||| ||||||||||||| ||||||| |||||||| | ||||| |||| |||||||||||    
T  37077488 tatgaagcacggacattccttggattaggtgtgtccccgtgtcggacatgcgtccgtgtacgacaccgaca 37077418  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 44652818 - 44652876
Alignment:
Q  231 caaattaaccactaataaactcgggttttaatgtttttagaagagacaagagcataaaa 289  Q
    |||||||||||||||| || |  ||||||||| ||||||||||||||||||||||||||    
T  44652818 caaattaaccactaattaatttaggttttaatatttttagaagagacaagagcataaaa 44652876  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 549 - 622
Target Start/End: Original strand, 40993275 - 40993347
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacaca 622  Q
    |||||||||| ||||| |||| |||||||| |||||||||||||||| | | ||| ||||||||||||||||||    
T  40993275 ctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtc-gtgtccgacaccgacaca 40993347  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 51341572 - 51341636
Alignment:
Q  232 aaattaaccactaataaactcgggttttaatgtttttagaagagacaagagcataaaataaccaa 296  Q
    |||||||||| ||||||| || | |||||||  ||||||||||| ||||||||||||||||||||    
T  51341572 aaattaaccaataataaattccgattttaatagttttagaagaggcaagagcataaaataaccaa 51341636  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 621
Target Start/End: Complemental strand, 55401194 - 55401123
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||| ||||| |||| |||||||| ||||| |||||||||| ||| |||| ||||||||||||||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcg-tgtccgacaccgacac 55401123  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 627
Target Start/End: Complemental strand, 21211413 - 21211335
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    ||||||||||   ||| |||| |||||||| ||||||| |||||||| |||||||||||||  |||||||||| |||||    
T  21211413 ctatgaagcacaaacactcctcggattaggagtgtcccagtgtcggacacgcgtcggtgtcgaacaccgacacgacacc 21211335  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 44652691 - 44652740
Alignment:
Q  141 tataataacttaatttctcattgtttcttcataatttcataactacaatt 190  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||| ||||    
T  44652691 tataataatttaatttctaattgtttcttcatgatttcataactataatt 44652740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 550 - 621
Target Start/End: Original strand, 15999951 - 16000027
Alignment:
Q  550 tatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcg-----gtgtccgacaccgacac 621  Q
    ||||| ||| ||||| ||||||||||||| |||||||||||||||| ||| ||||     |||||||||||||||||    
T  15999951 tatgatgcacggacactccttggattaggcgtgtcccggtgtcggacacgtgtcgtgtacgtgtccgacaccgacac 16000027  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 551 - 615
Target Start/End: Original strand, 24204983 - 24205047
Alignment:
Q  551 atgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacac 615  Q
    |||||||| ||||| |||| | |||||| |||||| ||||||||| ||||||| |||||||||||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgacac 24205047  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 617
Target Start/End: Original strand, 303200 - 303251
Alignment:
Q  566 tccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccg 617  Q
    ||||||||||||| ||||  | ||||||||||||||||| ||||||||||||    
T  303200 tccttggattaggcgtgtttcagtgtcggatacgcgtcgatgtccgacaccg 303251  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 549 - 623
Target Start/End: Original strand, 2408590 - 2408664
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaa 623  Q
    |||||||||| ||| | ||||| ||||||| |||||||||||||| | |||| || ||||| ||| |||||||||    
T  2408590 ctatgaagcacggagactccttagattaggcgtgtcccggtgtcgaacacgcatcagtgtctgactccgacacaa 2408664  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 551 - 621
Target Start/End: Original strand, 4987222 - 4987291
Alignment:
Q  551 atgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||| | ||||| |||| |||||||| |||||||||||||||| ||| ||| |||||| ||||||||||    
T  4987222 atgaagtacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccaacaccgacac 4987291  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 549 - 627
Target Start/End: Complemental strand, 8039337 - 8039259
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    ||||||||||   ||| ||||||||||||| ||||||||| |||||| ||||||  || | |||||| |||||||||||    
T  8039337 ctatgaagcataaacactccttggattaggtgtgtcccggagtcggacacgcgtttgtattcgacactgacacaacacc 8039259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 547 - 621
Target Start/End: Complemental strand, 20503586 - 20503513
Alignment:
Q  547 atctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||||| ||||| |||| |||||||| ||||||||||||| || | | ||| |||||| ||||||||||    
T  20503586 atctatgaagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtc-gtgtccaacaccgacac 20503513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 549 - 595
Target Start/End: Original strand, 34185052 - 34185098
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcgga 595  Q
    |||||||||| ||||| |||| |||||||| ||||||||||||||||    
T  34185052 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcgga 34185098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 549 - 595
Target Start/End: Original strand, 51206293 - 51206339
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcgga 595  Q
    |||||||||| ||||| |||||||||||| ||| |||||||||||||    
T  51206293 ctatgaagcacggacactccttggattagaggtatcccggtgtcgga 51206339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 628
Target Start/End: Original strand, 12704597 - 12704670
Alignment:
Q  555 agcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacct 628  Q
    |||| ||||| |||| |||||||  |||| | ||||||||| | |||| |||||||||||||||||| ||||||    
T  12704597 agcacggacactcctaggattagacgtgttctggtgtcggacatgcgttggtgtccgacaccgacacgacacct 12704670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 626
Target Start/End: Complemental strand, 14209243 - 14209167
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacac 626  Q
    |||||||||| ||||| | ||||||||||| || ||||| ||||| | ||| ||| ||||||||||||||||| ||||    
T  14209243 ctatgaagcacggacacttcttggattaggtgtatcccgatgtcgtacacgtgtc-gtgtccgacaccgacacgacac 14209167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 628
Target Start/End: Original strand, 25651987 - 25652044
Alignment:
Q  571 ggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacct 628  Q
    |||||||| ||||| |||||||| | ||| |||||||||| |||| ||||||||||||    
T  25651987 ggattaggtgtgtctcggtgtcgaacacgtgtcggtgtccaacactgacacaacacct 25652044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 615
Target Start/End: Complemental strand, 26665238 - 26665189
Alignment:
Q  566 tccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacac 615  Q
    |||||| ||||||||||| | ||||||||| |||| ||||||||||||||    
T  26665238 tccttgaattaggggtgttctggtgtcggacacgcttcggtgtccgacac 26665189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 626
Target Start/End: Complemental strand, 27903757 - 27903680
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacac 626  Q
    |||||||||| ||||| | || ||||||||  ||  || ||||| || |||||||||| |||||||||||||||||||    
T  27903757 ctatgaagcacggacacttctcggattaggcatgatccagtgtcagacacgcgtcggtatccgacaccgacacaacac 27903680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 604
Target Start/End: Complemental strand, 28918120 - 28918067
Alignment:
Q  551 atgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcg 604  Q
    |||||||| ||||| ||||||||||||| ||||||| |||||||| ||| ||||    
T  28918120 atgaagcagggacactccttggattaggcgtgtcccagtgtcggacacgtgtcg 28918067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 547 - 627
Target Start/End: Complemental strand, 241726 - 241647
Alignment:
Q  547 atctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacacc 627  Q
    |||||||||||| ||||| | || |||||||| |||||||||||||||| ||| ||| |||||||||||| |||| |||||    
T  241726 atctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacaccaacacgacacc 241647  T

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Target: scaffold0083 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 547 - 621
Target Start/End: Original strand, 45468 - 45541
Alignment:
Q  547 atctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||||| | |||||| ||||||||||  |||| ||||||| || ||| ||| |||||||||||||||||    
T  45468 atctatgaagcacgtacaatctttggattaggcatgtcgcggtgtcagacacgtgtc-gtgtccgacaccgacac 45541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 547 - 621
Target Start/End: Complemental strand, 8919 - 8846
Alignment:
Q  547 atctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacac 621  Q
    |||||||||||| ||| | ||||  ||||||| ||||| |||||||||| ||| ||| |||||||||||||||||    
T  8919 atctatgaagcacggagactcctcagattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacac 8846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 626
Target Start/End: Original strand, 3778 - 3854
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacac 626  Q
    |||||||||||||||| |||| |||||||| ||||| || ||||||| | | ||| |||||||||||| |||| ||||    
T  3778 ctatgaagcaaggacactcctcggattaggcgtgtctcgatgtcggacatgtgtc-gtgtccgacaccaacacgacac 3854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 45976 - 45919
Alignment:
Q  232 aaattaaccactaataaactcgggttttaatgtttttagaagagacaagagcataaaa 289  Q
    |||||| |||||||||||  | || || |||||||||||||||||||| |||||||||    
T  45976 aaattagccactaataaagccaggcttcaatgtttttagaagagacaatagcataaaa 45919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 626
Target Start/End: Complemental strand, 71855 - 71779
Alignment:
Q  549 ctatgaagcaaggacaatccttggattaggggtgtcccggtgtcggatacgcgtcggtgtccgacaccgacacaacac 626  Q
    ||||||||||  |||| |||| |||||||  |||||||||||||||| ||| ||  ||||||||||||||||| ||||    
T  71855 ctatgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacacgtgt-tgtgtccgacaccgacacgacac 71779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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