View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18245_low_2 (Length: 787)
Name: NF18245_low_2
Description: NF18245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18245_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 563; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 191 - 769
Target Start/End: Complemental strand, 46249279 - 46248701
Alignment:
| Q |
191 |
tttgtagtaatggaaaacaaggtggaggatcccaatgggatttctaaatttaagatatcggagccgttgagagaaaagttgaaggaaaagggaattgagt |
290 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46249279 |
tttgtagtaatggaaaacaaggtggaggatcccaatgggatttctaaatttaagatatcggagccgttgagagaaaagttgaaggaaaagggaattgagt |
46249180 |
T |
|
| Q |
291 |
cattgtttcctattcaggctatgacttttgatatcattcttcaaggttgtgatttggttggtagagctcgcactggtcaggtcaggtgtcattctcttta |
390 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46249179 |
cattgtttcctattcaggctatgacttttgatatcattcttcaaggttgtgatttggttggtagagctcgcactggtcaggtcaggtgtcattctcttta |
46249080 |
T |
|
| Q |
391 |
tttcttttccctttctttatctatagcattcattgacattttatattgaaggcgtgttcgatgacaatctgtcagtataagtgtcatgtcgagtgtttgt |
490 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46249079 |
tttcttttccctttctttatctatagcattcattgacattttatattgaaggcgtgtccgatgacaatctgtcagtataagtgtcatgtcgagtgtttgt |
46248980 |
T |
|
| Q |
491 |
atcaatgttttgtagttatttattataaaattgctaaagttatgtgtaatttcagtccattttgtcctgatgtattatagttggaagtgcatcattaatt |
590 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46248979 |
atcaatgttttgtggttatttatcataaaattgctaaagttgtgtgtaatttcagtccattttgtcctgatgtattatagttggaagtgcatcattaatt |
46248880 |
T |
|
| Q |
591 |
aattagtctttcatgagaggaatgtgattatttgattttgtggctgcataattgttttttctgcttttcacatgtttggataaataacatgattaaacat |
690 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46248879 |
aattagtctttcatgagaggaatgtgattatttgattttgtggctgcataattgttttttctgcttttcacatgtttggataaataacatgattaaacat |
46248780 |
T |
|
| Q |
691 |
caacaatataaatgcttatcatatgaatacctatgtataagccttttctataacaagagataaaataaagccaaattct |
769 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46248779 |
caacaatataaatgcttatcatatgaatacctatgtataagccttttctataacaagagataaaataaagccaaattct |
46248701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 46249396 - 46249325
Alignment:
| Q |
74 |
cgtaaggcttccgtgttatagacaatgacgacgaccaatagagacgataatgagaatagtttagagttggat |
145 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46249396 |
cgtaaggcttccatgttatagacaatgacgacgaccaatggagacgataatgagaatagtttagagttggat |
46249325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 46249455 - 46249425
Alignment:
| Q |
15 |
gaacaacaagaaaacatccagatgtggtttc |
45 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
46249455 |
gaacaacaagaaaacatccagatgtggtttc |
46249425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 767
Target Start/End: Complemental strand, 44032129 - 44032084
Alignment:
| Q |
722 |
tatgtataagccttttctataacaagagataaaataaagccaaatt |
767 |
Q |
| |
|
|||||||||||| |||||||||||| || |||||||||| |||||| |
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| T |
44032129 |
tatgtataagccgtttctataacaaaagctaaaataaagtcaaatt |
44032084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 700 - 765
Target Start/End: Original strand, 37033962 - 37034027
Alignment:
| Q |
700 |
aaatgcttatcatatgaatacctatgtataagccttttctataacaagagataaaataaagccaaa |
765 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | ||||||||| || ||||||||||||| |||| |
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|
| T |
37033962 |
aaatgcttatcatatgaatacttatgtataaactatttctataaaaaaagataaaataaagtcaaa |
37034027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 704 - 764
Target Start/End: Original strand, 48528500 - 48528560
Alignment:
| Q |
704 |
gcttatcatatgaatacctatgtataagccttttctataacaagagataaaataaagccaa |
764 |
Q |
| |
|
||||||||||| | ||| ||||||||||| |||||||||||||| |||||||||| |||| |
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| T |
48528500 |
gcttatcatataagtacttatgtataagctatttctataacaagaaataaaataaaaccaa |
48528560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 767
Target Start/End: Original strand, 1395611 - 1395656
Alignment:
| Q |
722 |
tatgtataagccttttctataacaagagataaaataaagccaaatt |
767 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||| |||||| |
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|
| T |
1395611 |
tatgtataagctatttctataacaaaagataaaataaagtcaaatt |
1395656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 760
Target Start/End: Complemental strand, 41029004 - 41028943
Alignment:
| Q |
699 |
taaatgcttatcatatgaatacctatgtataagccttttctataacaagagataaaataaag |
760 |
Q |
| |
|
|||||||||||||||| | | | ||||||||||| |||||||||||| ||| ||||||||| |
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|
| T |
41029004 |
taaatgcttatcatataagtgcttatgtataagctatttctataacaaaagaaaaaataaag |
41028943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 372
Target Start/End: Complemental strand, 20124912 - 20124833
Alignment:
| Q |
293 |
ttgtttcctattcaggctatgacttttgatatcattcttcaaggttgtgatttggttggtagagctcgcactggtcaggt |
372 |
Q |
| |
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|||||||| ||||| |||||||||||| ||| ||||||| | || | ||||||||||||| | ||||| ||||| ||||| |
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| T |
20124912 |
ttgtttccgattcaagctatgacttttaataccattcttgatgggtctgatttggttggtcgtgctcgtactggacaggt |
20124833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 765
Target Start/End: Complemental strand, 37063228 - 37063161
Alignment:
| Q |
698 |
ataaatgcttatcatatgaatacctatgtataagccttttctataacaagagataaaataaagccaaa |
765 |
Q |
| |
|
|||||||||| |||||| ||| | ||||||||| | |||||||||||| ||||||||||||| |||| |
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|
| T |
37063228 |
ataaatgcttgtcatataaatgcttatgtataaactatttctataacaaaagataaaataaagtcaaa |
37063161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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