View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18245_low_4 (Length: 427)

Name: NF18245_low_4
Description: NF18245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18245_low_4
NF18245_low_4
[»] chr4 (10 HSPs)
chr4 (161-415)||(11778456-11778710)
chr4 (156-357)||(11797084-11797286)
chr4 (5-104)||(11778955-11779054)
chr4 (1-117)||(11797803-11797920)
chr4 (1-74)||(11675910-11675983)
chr4 (1-74)||(11684189-11684262)
chr4 (1-95)||(11695984-11696079)
chr4 (160-234)||(11695765-11695839)
chr4 (5-106)||(11701770-11701872)
chr4 (162-294)||(11701497-11701626)
[»] scaffold0294 (2 HSPs)
scaffold0294 (1-106)||(16415-16521)
scaffold0294 (161-234)||(15841-15914)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 161 - 415
Target Start/End: Complemental strand, 11778710 - 11778456
Alignment:
Q  161 gtacctatgataaaccaagcggatagccaataaccagattttgatctgatggcaggttgtcctctataatcaacagcaccatctacaagatcatctaatt 260  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11778710 gtacctatgataaaccaagcggatagccaataaccagatttggatctgatggcaggttgtcctctataatcaacagcaccatctacaagatcagctaatt 11778611  T
Q  261 gagcttctagcaaaacttcattgtattcctccattgaacgaaattttcttcttcaataaaaatgagttgtttgcgtttatgtattcattacttcttggcc 360  Q
     ||| |||| |||||| ||||||||||| ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  11778610 tagcatctaacaaaacatcattgtattcttccatcgaaccaaattttcttcttcaatcaaaatgagttgtttgcgtttatgtattcattacttcttggtc 11778511  T
Q  361 cataaaagttaccacacaactaacttcttgatctgtccttgttaggatggttttg 415  Q
    ||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||    
T  11778510 cataaaagtcaccactcaactaacttcttgatatgtccttgttaggatggttttg 11778456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 156 - 357
Target Start/End: Complemental strand, 11797286 - 11797084
Alignment:
Q  156 aagtagtacctatgataaaccaagcggatagccaataaccagattttgatctgatggcaggttgtcctctataatcaacagcaccatctacaagatcatc 255  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||      
T  11797286 aagtagtacctatgataaaccaagcggatcgccaataaccagatttggatctgattgcaggttgccctctataatcaacagcaccatctacaagatcagt 11797187  T
Q  256 taattgagcttctagcaaaacttcattgtattcctccattgaacgaaattttcttcttcaataaaaatgag-ttgtttgcgtttatgtattcattacttc 354  Q
    |||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||    
T  11797186 taattgagcttctaacaaaacgtcattgtattcctccattgaaccaaattttcttcttcaatgaaaatgagtttttttgcgtttatgtattcattacttc 11797087  T
Q  355 ttg 357  Q
    |||    
T  11797086 ttg 11797084  T

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Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 11779054 - 11778955
Alignment:
Q  5 cctgttagatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacctccacacctaaattaacattcacaattcatttcaattatc 104  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  11779054 cctgttagatatgatatcaagtttcccttaaccccaaaatatgacatcctctctgccacctccacacctaaattaacattcacaatttatttcagttatc 11778955  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 11797920 - 11797803
Alignment:
Q  1 tggtcctgttagatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacctccacacctaaa-ttaacattcacaattcatttcaa 99  Q
    |||||||||||||||||||||||| || || | ||| ||| ||||||| | |||||||||||| ||||||||||||  ||||||||| ||||||||||||    
T  11797920 tggtcctgttagatatgatatcaaattcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataattcatttcaa 11797821  T
Q  100 ttatcattacatttagaa 117  Q
    || ||||| |||||||||    
T  11797820 ttctcattgcatttagaa 11797803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 11675983 - 11675910
Alignment:
Q  1 tggtcctgttagatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacctccacaccta 74  Q
    ||||||||||||||||||||||||||| || | ||||||| ||||||| | |||||||||||| ||||||||||    
T  11675983 tggtcctgttagatatgatatcaagttcccttgaatcccataatatgataccctctctgccacttccacaccta 11675910  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 11684262 - 11684189
Alignment:
Q  1 tggtcctgttagatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacctccacaccta 74  Q
    ||||||||||||||||||||||||||| || | ||||||| ||||||| | |||||||||||| ||||||||||    
T  11684262 tggtcctgttagatatgatatcaagttcccttgaatcccataatatgataccctctctgccacttccacaccta 11684189  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 11696079 - 11695984
Alignment:
Q  1 tggtcctgttagatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacctccacacctaaat-taacattcacaattcatt 95  Q
    |||||||||||||||||||||||| || || | ||| ||| |||||||   |||||||||||  ||||||||||||| ||||||||||||||||||    
T  11696079 tggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt 11695984  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 11695839 - 11695765
Alignment:
Q  160 agtacctatgataaaccaagcggatagccaataaccagattttgatctgatggcaggttgtcctctataatcaac 234  Q
    |||||||||||||||||||||||||  |||||| |||| ||| ||||| | ||||||||||||||| || |||||    
T  11695839 agtacctatgataaaccaagcggatctccaatagccagttttggatctaacggcaggttgtcctctgtagtcaac 11695765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 11701872 - 11701770
Alignment:
Q  5 cctgttagatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacctccacacctaaa-ttaacattcacaattcatttcaattat 103  Q
    |||||||||||||||||||| || || | ||| ||| ||||||| | |||||||||||| ||||||||||||  ||||||||| ||| ||||| |||| |    
T  11701872 cctgttagatatgatatcaaattcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataatccatttaaattct 11701773  T
Q  104 cat 106  Q
    |||    
T  11701772 cat 11701770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 294
Target Start/End: Complemental strand, 11701626 - 11701497
Alignment:
Q  162 tacctatgataaaccaagcggatagccaataaccagattttgatctgatggcaggttgtcctctataatcaacagcaccatctacaagatcatctaattg 261  Q
    |||||||||||||||||||||||  |||||||||||||||  | || |  ||||| |||||  | || |||||||| ||||| |||||   |  ||||||    
T  11701626 tacctatgataaaccaagcggatctccaataaccagatttaaacctaactgcaggctgtccattgtagtcaacagcgccatcaacaag---agataattg 11701530  T
Q  262 agcttctagcaaaacttcattgtattcctccat 294  Q
    |||||||| ||| ||||||||| |||| |||||    
T  11701529 agcttctaacaacacttcattggattcttccat 11701497  T

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Target: scaffold0294 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 16521 - 16415
Alignment:
Q  1 tggtcctgttagatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacctccacacctaaa-ttaacattcacaattcatttcaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||||||  ||||||||| ||| ||||||||    
T  16521 tggtcctgttagatatgatatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaa 16422  T
Q  100 ttatcat 106  Q
    || ||||    
T  16421 ttctcat 16415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 15914 - 15841
Alignment:
Q  161 gtacctatgataaaccaagcggatagccaataaccagattttgatctgatggcaggttgtcctctataatcaac 234  Q
    ||||||||||||||||||||||||  ||| ||||||||||| || || | ||||||||||||||| || |||||    
T  15914 gtacctatgataaaccaagcggatctccagtaaccagatttggacctaacggcaggttgtcctctgtagtcaac 15841  T

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