View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18245_low_8 (Length: 245)
Name: NF18245_low_8
Description: NF18245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18245_low_8 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 11797801 - 11797988
Alignment:
| Q |
19 |
gtttctaaatgcaatgagaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||| ||||| |||||||||| |
|
|
| T |
11797801 |
gtttctaaatgcaatgagaattgaaatgaattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatggaattcaagggaatttga |
11797900 |
T |
|
| Q |
119 |
tatcatatctaacaggaccactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||| | ||||| ||| |||||| |||||||||| |||| ||||| |
|
|
| T |
11797901 |
tatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatgtttgggttggaactgcttctctacttcc |
11797988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 35 - 206
Target Start/End: Original strand, 11675880 - 11676051
Alignment:
| Q |
35 |
agaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacagg |
134 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
11675880 |
agaattgaaatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacagg |
11675979 |
T |
|
| Q |
135 |
accactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcc |
206 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||| |||| |||||||||| |
|
|
| T |
11675980 |
accactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcc |
11676051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 35 - 206
Target Start/End: Original strand, 11684159 - 11684330
Alignment:
| Q |
35 |
agaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacagg |
134 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
11684159 |
agaattgaaatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacagg |
11684258 |
T |
|
| Q |
135 |
accactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcc |
206 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||| |||| |||||||||| |
|
|
| T |
11684259 |
accactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcc |
11684330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 11701770 - 11701956
Alignment:
| Q |
32 |
atgagaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaac |
131 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
11701770 |
atgagaatttaaatggattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatggaattcaagggaatttgatatcatatctaac |
11701869 |
T |
|
| Q |
132 |
aggaccactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgc |
218 |
Q |
| |
|
||| ||||||||||| ||||||| |||||||||||||||||| ||| ||||||||||||| ||| |||| ||||| || |||||||| |
|
|
| T |
11701870 |
agggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaacagcttctctacttcctctcttaggtgc |
11701956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 11695984 - 11696147
Alignment:
| Q |
43 |
aatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactca |
142 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||| ||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11695984 |
aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggaatttgatatcatatctaacaggaccactca |
11696083 |
T |
|
| Q |
143 |
aacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcc |
206 |
Q |
| |
|
|||||||||||| || ||||||| | ||||| ||||||||||||||||||||| |||| ||||| |
|
|
| T |
11696084 |
aacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcc |
11696147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 63 - 206
Target Start/End: Original strand, 11778983 - 11779126
Alignment:
| Q |
63 |
tttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactcaaacaaagcactgtaacagct |
162 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| || |||| || |||| || |||||||||||||||||||| ||||||||||||||||||| ||| ||| |
|
|
| T |
11778983 |
tttaggtgtggaggtggcagagaggatgtcatattttggggttaagggaaacttgatatcatatctaacagggccactcaaacaaagcactgcaactgct |
11779082 |
T |
|
| Q |
163 |
gctaagaatgtcaatatttgggctggaactgctgctctccttcc |
206 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
11779083 |
gctaagaatgtgaatgtttgggctggaactgcttctctccttcc |
11779126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 16415 - 16601
Alignment:
| Q |
32 |
atgagaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaac |
131 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||| |||| || ||||||||||||||||| |
|
|
| T |
16415 |
atgagaattgaaatggattatgaatgttatgtttaggtgtggaagtagcagagaggatatcatatattgggattaagggaaacttgatatcatatctaac |
16514 |
T |
|
| Q |
132 |
aggaccactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgc |
218 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| ||||| || |||||||| |
|
|
| T |
16515 |
aggaccactcaaacaaagcactgcaacagctgctaagaatgtgaatatttgggctggaactgcttctctacttcctctcttaggtgc |
16601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University