View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18246_high_1 (Length: 513)
Name: NF18246_high_1
Description: NF18246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18246_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Original strand, 54339773 - 54340257
Alignment:
| Q |
17 |
atataacacaaatgtaaccaacatattctctaacgtactatcaaacagcaaagacattagagtcannnnnnnnccctcgcatgtacatttgttgcataat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
54339773 |
atataacacaaatgtaaccaacatattctctaacgtactatcaaacagcaaagacattagagtcatttttttttcctcgcatgtacatttgttgcataat |
54339872 |
T |
|
| Q |
117 |
gttattggatttttggtcccctagctagagttcatgtgttagcttctaactatgatgtgaatagtaaactgtaatggggtatactgctaccatatcccta |
216 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54339873 |
gttattggatttttggtcccctggctagagttcatgtgttagcttctaactatggtgtgaatagtaaactgtaatggggtatactgctaccatgtcccta |
54339972 |
T |
|
| Q |
217 |
gtaagtacctaagttaggaaccaacaattattataa---gtttggatttgaaatcatcttcatgacgaagatatgatcatcgtgacgaaaatgatgaccc |
313 |
Q |
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||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54339973 |
gtacgtatctaagttaggaaccaacaattattataataagtttggatttgaaatcatcttcatgacgaagatatgatcatcgtgacgaaaatgatgaccc |
54340072 |
T |
|
| Q |
314 |
aaaggtattgattgtttgttaaaatgagttgcagcactaatatatgtttgataaatgtaatactcttccccacaacagtgacacnnnnnnnagtacaaag |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
54340073 |
aaaggtattgattgtttgttaaaatgagttgcagcactaatatatgttcgataaacgtaatactcttccccacaacagtgacactttttttagtacaaag |
54340172 |
T |
|
| Q |
414 |
attttgtggggaatagagtaatatatgttg---tattataggagtaatttcttaatcttgttgaaaaagacattgagagagcttt |
495 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54340173 |
attttgtggggaatagagtaatatatgttgtattattataggagtaatttcttaatcttgttgaaaaagacattgagagagcttt |
54340257 |
T |
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