View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18246_low_3 (Length: 360)
Name: NF18246_low_3
Description: NF18246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18246_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 21193630 - 21193383
Alignment:
| Q |
10 |
ataatactactaacaatactaacatggacagtttcaaaagagaagnnnnnnnngtaccgcggtcttgacgagctcgtcggcataggaaccagctctaatg |
109 |
Q |
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| T |
21193630 |
ataatactactaacaatactaacatggacagtttcaaaagagaagaaaaaaaagtaccgcggtcttgacgagctcgtcggcataggaaccagctctaatg |
21193531 |
T |
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| Q |
110 |
gtaagacctgatggagcagtagggttgcatctaacaacagacatagaagaaggttgacgtaggagtgtttgtcccttcacccattcagacttgtcaagaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21193530 |
gtaagacctgatggagcagtagggttgcatctaacaacagacatagaagaaggttgacgtaggagtgtttgtcccttcacccattcagacttgtcaagaa |
21193431 |
T |
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| Q |
210 |
caagggatgacttgaaacaagatgctgaagcagaagccatagttctta |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21193430 |
caagggatgacttgaaacaagatgctgaagcagaagccatagttctta |
21193383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 27249403 - 27249156
Alignment:
| Q |
10 |
ataatactactaacaatactaacatggacagtttcaaaagagaagnnnnnnnngtaccgcggtcttgacgagctcgtcggcataggaaccagctctaatg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27249403 |
ataatactactaacaatactaacatggacagtttcaaaagagaagaaaaaaaagtaccgcggtcttgacgagctcgtcggcataggaaccagctctaatg |
27249304 |
T |
|
| Q |
110 |
gtaagacctgatggagcagtagggttgcatctaacaacagacatagaagaaggttgacgtaggagtgtttgtcccttcacccattcagacttgtcaagaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27249303 |
gtaagacctgatggagcagtagggttgcatctaacaacagacatagaagaaggttgacgtaggagtgtttgtcccttcacccattcagacttgtcaagaa |
27249204 |
T |
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| Q |
210 |
caagggatgacttgaaacaagatgctgaagcagaagccatagttctta |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27249203 |
caagggatgacttgaaacaagatgctgaagcagaagccatagttctta |
27249156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 21193344 - 21193286
Alignment:
| Q |
284 |
aacactataatcttatctcaaacaacaatctcttcaccacacaaaaacattaactgctt |
342 |
Q |
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| T |
21193344 |
aacactataatcttatctcaaacaacaatctcttcaccacacaaaaacattaactgctt |
21193286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 27249137 - 27249079
Alignment:
| Q |
284 |
aacactataatcttatctcaaacaacaatctcttcaccacacaaaaacattaactgctt |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27249137 |
aacactataatcttatctcaaacaacaatctcttcaccacacaaaaacattaactgctt |
27249079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 64 - 249
Target Start/End: Complemental strand, 27261231 - 27261052
Alignment:
| Q |
64 |
taccgcggtcttgacgagctcgtcggcataggaaccagctctaatggtaagacctgatggagcagtagggttgcatctaacaacagacatagaagaaggt |
163 |
Q |
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|||||||||||| |||||||| | |||||||||||||||||| || || |||| ||||||||| | |||||||||| ||| | | || ||||| | |
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| T |
27261231 |
taccgcggtcttaacgagctcattggcataggaaccagctctgatagtgagacttgatggagcggcggggttgcatcgtacagcggccaccgaaga---t |
27261135 |
T |
|
| Q |
164 |
tgacgtaggagtgtttgtcccttcacccattcagacttgtcaagaacaagggatgacttgaaacaagatgctgaagcagaagccat |
249 |
Q |
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| T |
27261134 |
tgacggagg---gtttggcccttcacccattcagacttgtcaagaacaattgatgacttgaagagagatgctgatgcagatgccat |
27261052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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