View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18246_low_6 (Length: 282)
Name: NF18246_low_6
Description: NF18246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18246_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 102 - 264
Target Start/End: Complemental strand, 36369474 - 36369312
Alignment:
| Q |
102 |
cctagttcaactgcattgactcgtaaaaataaatcttggccttgatcgctaactttctgaacgtccattaaatccccatgccatgccaaacaaccacttc |
201 |
Q |
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|||||||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36369474 |
cctagttcaattgcattgacgcgtaaaaataaatcctggccttgatcgctaagtttctgaacgtccattaaatccccatgccatgccaaacaaccacttc |
36369375 |
T |
|
| Q |
202 |
caccattcctcacatcagcaactgcataggcagtacaagagcagtttctcaagcattctttct |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36369374 |
caccattcctcacatcagcaactgcataggcagtacaagagcagtttctcaagcattctttct |
36369312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 36426329 - 36426083
Alignment:
| Q |
18 |
gaagcaacaagttcaaataagttcaaactgcacctaagttatatcaaatttagaacgaaaaacatggtaggggggaatatcttacctagttcaactgcat |
117 |
Q |
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|||| ||||||| |||| ||||| ||||| ||| ||||| | |||||||||| | |||||| | ||| ||||| |||||||||||||||||| | |
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| T |
36426329 |
gaagaaacaagtccaaagaagtttaaactacacataagtggtgtcaaatttagcaagaaaaaaccagcaggagggaaaatcttacctagttcaactttag |
36426230 |
T |
|
| Q |
118 |
tgactcgtaaaaataaatcttggccttgatcgctaactttctgaacgtccattaaatccccatgccatgccaaacaaccacttccaccattcctcacatc |
217 |
Q |
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||| |||||||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| || |
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| T |
36426229 |
cgacgcgtaaaaataaatcttggccttgatcactaagtttttgaatgtccattaaatccccatgccatgccaaacatccacttccaccattcttcacgtc |
36426130 |
T |
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| Q |
218 |
agcaactgcataggcagtacaagagcagtttctcaagcattctttct |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36426129 |
agcaactgcataggcagtacaagagcagtttctcaagcattctttct |
36426083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 24 - 264
Target Start/End: Complemental strand, 36404845 - 36404603
Alignment:
| Q |
24 |
acaagttcaaataagttcaaactgcacctaagttatatcaaatttagaacgaaaaacatggtaggggggaatatcttacctagttcaactgcattgactc |
123 |
Q |
| |
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|||||| |||||||||| ||||| || ||||| | |||||||||||| |||||| | ||||| ||| |||||||||||||||||||| || ||| | |
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| T |
36404845 |
acaagtccaaataagtttaaactatacataagtgctgtcaaatttagaa-gaaaaaaacagtaggaggggatatcttacctagttcaactttatcgacgc |
36404747 |
T |
|
| Q |
124 |
gtaaaaataaatcttggccttgatcgcta---actttctgaacgtccattaaatccccatgccatgccaaacaaccacttccaccattcctcacatcagc |
220 |
Q |
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||||||||||||||||||||||||| ||| | ||| |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
36404746 |
gtaaaaataaatcttggccttgatcactactaagtttttgaatgtccattaaatccccatgccatgccaaacatccactaccaccattcctcacatcagc |
36404647 |
T |
|
| Q |
221 |
aactgcataggcagtacaagagcagtttctcaagcattctttct |
264 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36404646 |
aactgcataggcagtacaagagcaatttctcaagcattctttct |
36404603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 88 - 261
Target Start/End: Complemental strand, 36374107 - 36373934
Alignment:
| Q |
88 |
gggggaatatcttacctagttcaactgcattgactcgtaaaaataaatcttggccttgatcgctaactttctgaacgtccattaaatccccatgccatgc |
187 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||| |||| ||| |||| ||||||||||||||||| |||||| |
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| T |
36374107 |
ggggaaataccttacctagttcaactgcatcgacacgtacaaataaatcttggccttgatcactaagtttttgaatgtccattaaatccccataccatgc |
36374008 |
T |
|
| Q |
188 |
caaacaaccacttccaccattcctcacatcagcaactgcataggcagtacaagagcagtttctcaagcattctt |
261 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36374007 |
caaacagccacttccaccattactcacatcagcaactgcataggaagtacaagagcagtttctcaagcattctt |
36373934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 36397916 - 36397670
Alignment:
| Q |
18 |
gaagcaacaagttcaaataagttcaaactgcacctaagttatatcaaatttagaacgaaaaacatggtaggggggaatatcttacctagttcaactgcat |
117 |
Q |
| |
|
|||| ||||||| || | ||||| ||||| ||| ||||| | |||||||||||| ||||| | ||||| |||||||||||||| ||||||||| || |
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| T |
36397916 |
gaagaaacaagtccagagaagtttaaactacacataagtggtgtcaaatttagaagaaaaaaaacagtaggagggaatatcttaccaagttcaactttat |
36397817 |
T |
|
| Q |
118 |
tgactcgtaaaaataaatcttggccttgatcgctaactttctgaacgtccattaaatccccatgccatgccaaacaaccacttccaccattcctcacatc |
217 |
Q |
| |
|
||| || ||| ||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
36397816 |
cgacgcgcaaatataaatcttggccttgatcactaagtttttgaatgtccattaaatccccatgccatgccaaacatccactaccaccattcctcacatc |
36397717 |
T |
|
| Q |
218 |
agcaactgcataggcagtacaagagcagtttctcaagcattctttct |
264 |
Q |
| |
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|| |||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
36397716 |
ggctactgcataggaagtacaggagcagtttctcaagcattctttct |
36397670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 90 - 262
Target Start/End: Complemental strand, 36434114 - 36433942
Alignment:
| Q |
90 |
gggaatatcttacctagttcaactgcattgactcgtaaaaataaatcttggccttgatcgctaactttctgaacgtccattaaatccccatgccatgcca |
189 |
Q |
| |
|
|||||| ||||||||||||||||| || ||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||||| ||||||||||||| |
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| T |
36434114 |
gggaatttcttacctagttcaactttatcgacacgtaaaaataaatcttggccttgatcgcttactttttgaatgtccattaaatcaccatgccatgcca |
36434015 |
T |
|
| Q |
190 |
aacaaccacttccaccattcctcacatcagcaactgcataggcagtacaagagcagtttctcaagcattcttt |
262 |
Q |
| |
|
|||| || ||||||||||| ||||||| | ||||||||||||| |||||||| |||||||| ||||||||||| |
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| T |
36434014 |
aacacccgcttccaccattgctcacattatcaactgcataggctgtacaagaacagtttctgaagcattcttt |
36433942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 94 - 264
Target Start/End: Complemental strand, 36388061 - 36387891
Alignment:
| Q |
94 |
atatcttacctagttcaactgcattgactcgtaaaaataaatcttggccttgatcgctaactttctgaacgtccattaaatccccatgccatgccaaaca |
193 |
Q |
| |
|
|||||||||||||||||| | || ||| |||| ||||||||||||||||||||| ||| ||| |||| ||| |||||||||||||||||||||||||| |
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|
| T |
36388061 |
atatcttacctagttcaattttatcgacgcgtagaaataaatcttggccttgatcattaagtttttgaatgtctattaaatccccatgccatgccaaaca |
36387962 |
T |
|
| Q |
194 |
accacttccaccattcctcacatcagcaactgcataggcagtacaagagcagtttctcaagcattctttct |
264 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
36387961 |
tccacttccaccattcctcacatcagcaattgaataggcagtacaagaacagttttgcaagcattctttct |
36387891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 84 - 264
Target Start/End: Complemental strand, 36412097 - 36411917
Alignment:
| Q |
84 |
gtaggggggaatatcttacctagttcaactgcattgactcgtaaaaataaatcttggccttgatcgctaactttctgaacgtccattaaatccccatgcc |
183 |
Q |
| |
|
||||| |||||||||||||| ||||||||| | ||| || ||||||||||||||||| |||| |||| ||| |||| ||||||||||| |||||||| |
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| T |
36412097 |
gtaggagggaatatcttaccaagttcaactttctcgacgcgcaaaaataaatcttggccctgattactaagtttttgaatgtccattaaattcccatgcc |
36411998 |
T |
|
| Q |
184 |
atgccaaacaaccacttccaccattcctcacatcagcaactgcataggcagtacaagagcagtttctcaagcattctttct |
264 |
Q |
| |
|
| | |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| |
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|
| T |
36411997 |
acgtcaaacatccactaccaccattcctcacatcagcaactgcataggcattacaagaacagtttctcaagcaatctttct |
36411917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 84 - 264
Target Start/End: Complemental strand, 36417428 - 36417248
Alignment:
| Q |
84 |
gtaggggggaatatcttacctagttcaactgcattgactcgtaaaaataaatcttggccttgatcgctaactttctgaacgtccattaaatccccatgcc |
183 |
Q |
| |
|
||||| |||||||||||||| ||||||||| | ||| || ||||||||||||||||| |||| |||| ||| |||| ||||||||||| |||||||| |
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|
| T |
36417428 |
gtaggagggaatatcttaccaagttcaactttctcgacgcgcaaaaataaatcttggccctgattactaagtttttgaatgtccattaaattcccatgcc |
36417329 |
T |
|
| Q |
184 |
atgccaaacaaccacttccaccattcctcacatcagcaactgcataggcagtacaagagcagtttctcaagcattctttct |
264 |
Q |
| |
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| | |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| |
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|
| T |
36417328 |
acgtcaaacatccactaccaccattcctcacatcagcaactgcataggcattacaagaacagtttctcaagcaatctttct |
36417248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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